Wall clock time and date at job start Tue Mar 31 2020 15:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47344 * 2 1 4 4 C 1.50702 * 109.47398 * 179.97438 * 3 2 1 5 5 O 1.21287 * 119.99506 * 0.02562 * 4 3 2 6 6 N 1.34775 * 120.00031 * 179.97438 * 4 3 2 7 7 C 1.46498 * 119.99790 * 179.97438 * 6 4 3 8 8 H 1.08997 * 109.47353 * 325.00906 * 7 6 4 9 9 C 1.53006 * 109.46753 * 85.00432 * 7 6 4 10 10 C 1.52993 * 109.47209 * 205.00402 * 7 6 4 11 11 H 1.09006 * 110.88493 * 299.89707 * 10 7 6 12 12 C 1.55404 * 111.07364 * 63.68001 * 10 7 6 13 13 C 1.54320 * 102.82959 * 153.48475 * 12 10 7 14 14 N 1.47022 * 107.40299 * 337.98180 * 13 12 10 15 15 C 1.34780 * 125.64542 * 178.89692 * 14 13 12 16 16 O 1.21283 * 119.99483 * 179.97438 * 15 14 13 17 17 C 1.50696 * 119.99897 * 359.97392 * 15 14 13 18 18 S 1.81002 * 109.46853 * 179.97438 * 17 15 14 19 19 C 1.76201 * 100.00039 * 179.97438 * 18 17 15 20 20 H 1.08000 * 119.99695 * 0.02562 * 19 18 17 21 21 C 1.38802 * 119.99759 * 180.02562 * 19 18 17 22 22 N 1.31627 * 120.00381 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99568 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47352 * 60.00031 * 23 21 19 25 25 H 1.48499 * 109.47077 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47250 * 299.99964 * 23 21 19 27 27 C 1.47425 * 108.70467 * 358.86032 * 14 13 12 28 28 H 1.09001 * 109.47224 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46997 * 300.00450 * 1 2 3 30 30 H 1.09001 * 109.46404 * 60.00490 * 1 2 3 31 31 H 1.09002 * 109.47474 * 239.99738 * 2 1 3 32 32 H 1.09003 * 109.47024 * 119.99919 * 2 1 3 33 33 H 1.09002 * 109.47049 * 59.99478 * 3 2 1 34 34 H 1.09003 * 109.46993 * 299.99937 * 3 2 1 35 35 H 0.96998 * 119.99952 * 0.02562 * 6 4 3 36 36 H 1.08998 * 109.47281 * 305.07741 * 9 7 6 37 37 H 1.08995 * 109.47031 * 65.08197 * 9 7 6 38 38 H 1.09000 * 109.46775 * 185.08148 * 9 7 6 39 39 H 1.08996 * 110.68757 * 35.19755 * 12 10 7 40 40 H 1.09001 * 110.85294 * 271.85296 * 12 10 7 41 41 H 1.08995 * 109.88475 * 218.47980 * 13 12 10 42 42 H 1.09005 * 109.87701 * 97.47041 * 13 12 10 43 43 H 1.08992 * 109.47433 * 299.99513 * 17 15 14 44 44 H 1.09004 * 109.47241 * 60.00102 * 17 15 14 45 45 H 0.96996 * 119.99881 * 179.97438 * 22 21 19 46 46 H 1.08998 * 110.36557 * 142.96456 * 27 14 13 47 47 H 1.09000 * 110.36401 * 265.29261 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4425 0.0006 5 8 4.1534 0.3921 0.0006 6 7 4.2210 2.6097 0.0002 7 6 5.6859 2.6096 0.0014 8 1 6.0488 1.7682 0.5917 9 6 6.1970 2.4828 -1.4352 10 6 6.1955 3.9174 0.6104 11 1 5.8469 4.7755 0.0357 12 6 5.7744 4.0409 2.1012 13 6 6.8702 4.9526 2.6924 14 7 8.0435 4.8579 1.8116 15 6 9.2040 5.5235 1.9748 16 8 10.1092 5.3673 1.1829 17 6 9.3768 6.4617 3.1414 18 16 11.0300 7.1965 3.0848 19 6 10.9600 8.2182 4.5187 20 1 10.0646 8.2410 5.1222 21 6 12.0555 8.9936 4.8725 22 7 13.1469 8.9654 4.1372 23 14 11.9814 10.0762 6.3930 24 1 11.7376 9.2321 7.5903 25 1 13.2700 10.7973 6.5505 26 1 10.8780 11.0593 6.2475 27 6 7.7407 3.9136 0.7207 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.7360 3.4497 -0.0001 36 1 5.7617 1.5977 -1.8989 37 1 5.9104 3.3684 -2.0023 38 1 7.2832 2.3920 -1.4276 39 1 5.7822 3.0646 2.5857 40 1 4.7939 4.5088 2.1900 41 1 7.1315 4.6156 3.6955 42 1 6.5157 5.9828 2.7282 43 1 8.6264 7.2503 3.0876 44 1 9.2570 5.9089 4.0731 45 1 13.9123 9.5075 4.3843 46 1 8.1884 4.2557 -0.2124 47 1 8.1006 2.9158 0.9718 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050099005.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:50 Heat of formation + Delta-G solvation = -94.131909 kcal Electronic energy + Delta-G solvation = -25181.455670 eV Core-core repulsion = 21489.557463 eV Total energy + Delta-G solvation = -3691.898208 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.52272 -39.64808 -37.70616 -35.60448 -34.71186 -32.43889 -32.31459 -30.71656 -29.60515 -28.26424 -27.70242 -25.51447 -24.36533 -22.74840 -21.99923 -20.87151 -20.41967 -19.34543 -17.78070 -17.39870 -17.03864 -16.57257 -16.22880 -15.71996 -15.12185 -14.81233 -14.69201 -14.44305 -14.20903 -14.17485 -13.85249 -13.59554 -13.42874 -13.18948 -12.97018 -12.60961 -12.58794 -12.51033 -12.37864 -12.17353 -11.83345 -11.70344 -11.62610 -11.38830 -11.18733 -11.15465 -11.04763 -11.04687 -10.96739 -10.77740 -10.13298 -9.83398 -9.50672 -9.38842 -9.06625 -8.53551 -8.24789 -6.51230 -6.22097 -3.93075 2.30855 2.70128 2.93787 3.04735 3.22735 3.25167 3.28560 3.59644 4.11173 4.18427 4.20444 4.35884 4.40676 4.46700 4.54772 4.87014 4.90349 4.92662 4.98346 5.04044 5.08456 5.12891 5.15188 5.16397 5.21668 5.29060 5.40835 5.44862 5.51366 5.59627 5.61276 5.65965 5.69375 5.71047 5.74620 5.85815 5.88085 5.92228 5.96418 6.12570 6.14592 6.38935 7.12312 7.58303 7.64151 7.88531 8.34260 8.53392 9.22880 10.85282 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.030809 B = 0.001889 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.600505 B =14816.837335 C =15525.633796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.141 4.141 4 C 0.512 3.488 5 O -0.539 6.539 6 N -0.726 5.726 7 C 0.154 3.846 8 H 0.092 0.908 9 C -0.165 4.165 10 C -0.111 4.111 11 H 0.091 0.909 12 C -0.123 4.123 13 C 0.101 3.899 14 N -0.627 5.627 15 C 0.549 3.451 16 O -0.515 6.515 17 C -0.147 4.147 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.118 3.882 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.400 0.600 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.269 0.731 46 H 0.082 0.918 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.595 -13.459 -8.067 30.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.181 4.181 4 C 0.299 3.701 5 O -0.416 6.416 6 N -0.378 5.378 7 C 0.049 3.951 8 H 0.110 0.890 9 C -0.224 4.224 10 C -0.131 4.131 11 H 0.110 0.890 12 C -0.161 4.161 13 C -0.022 4.022 14 N -0.364 5.364 15 C 0.337 3.663 16 O -0.389 6.389 17 C -0.297 4.297 18 S 0.166 5.834 19 C -0.685 4.685 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.005 4.005 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.234 0.766 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.079 0.921 46 H 0.100 0.900 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -24.514 -14.336 -9.248 29.866 hybrid contribution -1.377 1.425 1.953 2.782 sum -25.891 -12.912 -7.295 29.838 Atomic orbital electron populations 1.21798 0.95457 1.02047 1.01778 1.21281 0.95275 0.94637 1.03604 1.21736 0.91705 1.00313 1.04388 1.20785 0.90335 0.83571 0.75449 1.90723 1.70515 1.31287 1.49047 1.46101 1.07106 1.08744 1.75854 1.20866 0.79489 0.97570 0.97165 0.88991 1.22210 1.02026 1.02311 0.95827 1.22718 0.96003 0.97793 0.96588 0.89037 1.22719 0.98293 1.00471 0.94635 1.21986 0.85600 1.00214 0.94416 1.48486 1.14385 1.45480 1.28085 1.20032 0.80054 0.79692 0.86498 1.90713 1.39355 1.63925 1.44892 1.23504 1.07712 1.00398 0.98087 1.85404 1.07559 1.53611 1.36802 1.22819 1.03424 1.29886 1.12329 0.90987 1.24987 0.94500 0.96504 0.97529 1.70005 1.03586 1.38850 1.37796 0.86226 0.77591 0.79918 0.81767 1.19941 1.20782 1.19947 1.22067 0.92906 0.93697 0.91856 0.92371 0.92649 0.92701 0.91268 0.91212 0.88887 0.88948 0.76616 0.92007 0.92270 0.91073 0.90368 0.90011 0.91216 0.91231 0.89319 0.89307 0.92109 0.90003 0.91396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.91 37.16 0.37 -0.28 16 2 C -0.11 -0.65 5.22 -26.73 -0.14 -0.79 16 3 C -0.14 -0.67 5.70 -27.88 -0.16 -0.83 16 4 C 0.51 4.01 7.79 -10.98 -0.09 3.92 16 5 O -0.54 -6.57 15.65 5.55 0.09 -6.48 16 6 N -0.73 -4.30 4.84 -53.81 -0.26 -4.56 16 7 C 0.15 1.16 2.09 -67.93 -0.14 1.02 16 8 H 0.09 0.88 7.57 -51.93 -0.39 0.48 16 9 C -0.17 -1.29 9.23 37.16 0.34 -0.95 16 10 C -0.11 -0.84 2.63 -88.34 -0.23 -1.08 16 11 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 12 C -0.12 -0.88 6.21 -24.76 -0.15 -1.03 16 13 C 0.10 1.03 6.48 -3.07 -0.02 1.01 16 14 N -0.63 -8.86 3.33 -170.52 -0.57 -9.43 16 15 C 0.55 10.61 7.87 -10.99 -0.09 10.52 16 16 O -0.51 -11.99 16.12 5.56 0.09 -11.90 16 17 C -0.15 -3.01 5.35 36.00 0.19 -2.82 16 18 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 19 C -0.54 -15.30 9.50 30.94 0.29 -15.00 16 20 H 0.07 1.93 7.80 -52.49 -0.41 1.53 16 21 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 22 N -0.87 -26.16 13.22 55.49 0.73 -25.43 16 23 Si 0.92 21.35 29.55 -169.99 -5.02 16.32 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 27 C 0.12 1.35 5.52 -2.53 -0.01 1.34 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.07 0.49 8.10 -51.93 -0.42 0.07 16 32 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 33 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 35 H 0.40 1.32 8.60 -40.82 -0.35 0.97 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.57 7.60 -51.93 -0.39 0.18 16 39 H 0.08 0.58 8.04 -51.93 -0.42 0.16 16 40 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 44 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 45 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 46 H 0.08 1.02 8.04 -51.93 -0.42 0.60 16 47 H 0.07 0.77 8.03 -51.93 -0.42 0.36 16 LS Contribution 399.63 15.07 6.02 6.02 Total: -1.00 -36.45 399.63 -9.33 -45.78 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -8.27 Total: -3.52 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: 0.07 Total: -2.94 kcal Atomic # 7 Polarization: -39.32 SS G_CDS: -0.09 Total: -39.42 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: 0.18 Total: -18.39 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.45 -9.33 -45.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050099005.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.348 kcal (2) G-P(sol) polarization free energy of solvation -36.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds