Wall clock time and date at job start Tue Mar 31 2020 15:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46907 * 2 1 4 4 C 1.50703 * 109.47030 * 179.97438 * 3 2 1 5 5 O 1.21281 * 120.00212 * 359.97438 * 4 3 2 6 6 N 1.34774 * 120.00028 * 180.02562 * 4 3 2 7 7 C 1.47492 * 127.03342 * 0.02562 * 6 4 3 8 8 C 1.54001 * 107.08521 * 205.41294 * 7 6 4 9 9 H 1.08998 * 110.32898 * 239.70193 * 8 7 6 10 10 C 1.52997 * 110.32967 * 117.58598 * 8 7 6 11 11 C 1.54621 * 105.04510 * 358.69336 * 8 7 6 12 12 H 1.08990 * 110.73922 * 96.48898 * 11 8 7 13 13 C 1.53001 * 110.74019 * 219.81869 * 11 8 7 14 14 N 1.46504 * 109.47081 * 185.00176 * 13 11 8 15 15 C 1.34771 * 119.99820 * 179.97438 * 14 13 11 16 16 O 1.21283 * 120.00255 * 359.97438 * 15 14 13 17 17 C 1.50705 * 119.99871 * 179.97438 * 15 14 13 18 18 S 1.80993 * 109.47158 * 180.02562 * 17 15 14 19 19 C 1.76198 * 100.00034 * 180.02562 * 18 17 15 20 20 H 1.07999 * 119.99879 * 0.02562 * 19 18 17 21 21 C 1.38801 * 119.99933 * 179.97438 * 19 18 17 22 22 N 1.31629 * 120.00090 * 0.02562 * 21 19 18 23 23 Si 1.86809 * 119.99838 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46946 * 60.00448 * 23 21 19 25 25 H 1.48493 * 109.46813 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47058 * 300.00375 * 23 21 19 27 27 C 1.48119 * 127.03509 * 179.97438 * 6 4 3 28 28 H 1.09004 * 109.47460 * 60.00127 * 1 2 3 29 29 H 1.09000 * 109.47221 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47381 * 299.99797 * 1 2 3 31 31 H 1.08999 * 109.47381 * 240.00203 * 2 1 3 32 32 H 1.09004 * 109.47460 * 119.99873 * 2 1 3 33 33 H 1.09005 * 109.47234 * 60.00260 * 3 2 1 34 34 H 1.08997 * 109.47360 * 299.99665 * 3 2 1 35 35 H 1.09003 * 109.91034 * 86.05153 * 7 6 4 36 36 H 1.08997 * 110.07386 * 324.86109 * 7 6 4 37 37 H 1.09002 * 109.47153 * 61.45250 * 10 8 7 38 38 H 1.09001 * 109.46832 * 301.45441 * 10 8 7 39 39 H 1.09004 * 109.47261 * 181.45423 * 10 8 7 40 40 H 1.09001 * 109.46729 * 304.99809 * 13 11 8 41 41 H 1.08995 * 109.47342 * 64.99988 * 13 11 8 42 42 H 0.96995 * 119.99637 * 359.97438 * 14 13 11 43 43 H 1.08998 * 109.46837 * 299.99976 * 17 15 14 44 44 H 1.09002 * 109.46750 * 59.99804 * 17 15 14 45 45 H 0.97006 * 120.00153 * 180.02562 * 22 21 19 46 46 H 1.08999 * 110.66058 * 259.18283 * 27 6 4 47 47 H 1.08994 * 110.66288 * 22.30353 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4426 0.0006 5 8 4.1534 0.3923 0.0015 6 7 4.2208 2.6098 0.0013 7 6 3.6453 3.9678 0.0020 8 6 4.6929 4.9035 -0.6292 9 1 4.9809 5.6813 0.0780 10 6 4.1420 5.5300 -1.9117 11 6 5.9010 3.9939 -0.9518 12 1 5.8737 3.6706 -1.9922 13 6 7.2167 4.7096 -0.6395 14 7 8.3411 3.8724 -1.0653 15 6 9.6061 4.3025 -0.8890 16 8 9.8138 5.3827 -0.3782 17 6 10.7627 3.4410 -1.3264 18 16 12.3191 4.2877 -0.9571 19 6 13.4671 3.0921 -1.5548 20 1 13.1097 2.1697 -1.9881 21 6 14.8309 3.3363 -1.4698 22 7 15.2665 4.4607 -0.9422 23 14 16.0480 2.0684 -2.1029 24 1 15.8144 1.8381 -3.5512 25 1 17.4321 2.5652 -1.8970 26 1 15.8648 0.7939 -1.3631 27 6 5.6908 2.7912 0.0025 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.4354 4.2815 1.0246 36 1 2.7285 3.9858 -0.5873 37 1 3.2606 6.1261 -1.6754 38 1 3.8699 4.7415 -2.6134 39 1 4.9031 6.1687 -2.3601 40 1 7.2489 5.6597 -1.1727 41 1 7.2854 4.8922 0.4329 42 1 8.1749 3.0086 -1.4740 43 1 10.7306 2.4913 -0.7926 44 1 10.6938 3.2576 -2.3987 45 1 16.2196 4.6316 -0.8831 46 1 6.0483 3.0282 1.0045 47 1 6.1884 1.9019 -0.3842 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051791336.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:45 Heat of formation + Delta-G solvation = -94.473522 kcal Electronic energy + Delta-G solvation = -25105.918531 eV Core-core repulsion = 21414.005510 eV Total energy + Delta-G solvation = -3691.913021 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.65526 -39.24438 -38.26983 -34.81548 -34.73612 -33.13701 -32.41671 -31.04312 -29.37081 -28.23482 -26.80033 -25.72207 -25.33229 -22.66772 -21.92367 -20.80218 -20.20467 -19.43539 -17.87623 -17.36129 -16.90742 -16.23793 -16.18081 -15.78535 -15.36369 -15.14768 -14.79093 -14.46300 -14.41568 -14.02705 -13.84988 -13.68803 -13.36141 -13.19351 -13.06059 -12.87400 -12.60055 -12.46638 -12.37643 -12.14627 -11.92748 -11.81515 -11.61116 -11.37704 -11.18198 -11.13784 -11.07122 -11.03315 -11.02475 -10.75263 -10.13438 -9.81500 -9.41681 -9.07965 -9.05286 -8.91301 -8.23434 -6.49060 -6.20467 -3.91078 2.30231 2.55043 3.02096 3.09162 3.24847 3.28467 3.31826 3.66852 3.98960 4.01145 4.21774 4.27964 4.38083 4.45529 4.55654 4.65193 4.82318 4.90010 4.95852 5.02285 5.03870 5.06106 5.14629 5.16805 5.18071 5.24881 5.27800 5.39017 5.45544 5.50928 5.56025 5.61382 5.63546 5.66946 5.72930 5.77155 5.82485 5.90283 5.91460 6.00824 6.15590 6.57864 7.15987 7.60575 7.67757 7.82106 8.36303 8.59693 9.24815 10.86870 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019252 B = 0.002010 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.080150 B =13927.957104 C =15076.691713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.111 4.111 3 C -0.135 4.135 4 C 0.529 3.471 5 O -0.538 6.538 6 N -0.624 5.624 7 C 0.104 3.896 8 C -0.099 4.099 9 H 0.093 0.907 10 C -0.145 4.145 11 C -0.110 4.110 12 H 0.092 0.908 13 C 0.133 3.867 14 N -0.740 5.740 15 C 0.533 3.467 16 O -0.518 6.518 17 C -0.154 4.154 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.106 3.894 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.398 0.602 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.269 0.731 46 H 0.077 0.923 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.908 -2.191 0.125 31.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.175 4.175 4 C 0.319 3.681 5 O -0.415 6.415 6 N -0.359 5.359 7 C -0.019 4.019 8 C -0.118 4.118 9 H 0.111 0.889 10 C -0.202 4.202 11 C -0.130 4.130 12 H 0.110 0.890 13 C 0.009 3.991 14 N -0.395 5.395 15 C 0.319 3.681 16 O -0.392 6.392 17 C -0.305 4.305 18 S 0.167 5.833 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.016 4.016 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.232 0.768 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.079 0.921 46 H 0.095 0.905 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -31.146 -0.930 1.047 31.177 hybrid contribution 0.461 -2.322 -1.178 2.644 sum -30.685 -3.252 -0.131 30.857 Atomic orbital electron populations 1.21789 0.95364 1.02080 1.01754 1.21303 0.95337 0.94562 1.03691 1.21705 0.91302 1.00256 1.04246 1.20467 0.90107 0.81933 0.75615 1.90735 1.70486 1.30425 1.49851 1.48848 1.07734 1.05640 1.73688 1.22238 0.97120 0.81470 1.01086 1.22073 0.93964 0.97186 0.98586 0.88868 1.21870 1.01280 1.00810 0.96246 1.22646 0.94197 0.95416 1.00739 0.89005 1.21237 0.83273 0.94030 1.00600 1.46019 1.05505 1.22605 1.65382 1.20302 0.83154 0.86841 0.77813 1.90702 1.84581 1.21948 1.41973 1.23539 0.99737 1.02890 1.04330 1.85368 0.91014 1.26246 1.80718 1.22833 0.92987 1.05826 1.46793 0.90964 1.24988 0.97533 0.96091 0.94934 1.70008 1.15162 1.23332 1.41810 0.86227 0.79286 0.80720 0.79288 1.19944 1.20810 1.19930 1.22591 0.80655 0.98559 0.99784 0.92685 0.92304 0.92673 0.91178 0.91174 0.88990 0.88993 0.91158 0.90432 0.92132 0.92443 0.91722 0.91022 0.91223 0.76785 0.89175 0.89214 0.92140 0.90457 0.89519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.91 37.16 0.37 -0.36 16 2 C -0.11 -0.76 5.22 -26.73 -0.14 -0.90 16 3 C -0.14 -0.82 4.78 -27.88 -0.13 -0.96 16 4 C 0.53 5.20 7.89 -10.98 -0.09 5.11 16 5 O -0.54 -7.60 16.19 5.56 0.09 -7.51 16 6 N -0.62 -5.13 3.29 -169.75 -0.56 -5.69 16 7 C 0.10 0.54 6.42 -2.98 -0.02 0.52 16 8 C -0.10 -0.54 3.17 -89.25 -0.28 -0.82 16 9 H 0.09 0.48 7.85 -51.93 -0.41 0.07 16 10 C -0.14 -0.69 8.89 37.16 0.33 -0.36 16 11 C -0.11 -0.82 2.62 -88.73 -0.23 -1.05 16 12 H 0.09 0.69 7.86 -51.93 -0.41 0.28 16 13 C 0.13 1.37 4.99 -4.04 -0.02 1.35 16 14 N -0.74 -9.44 5.47 -60.29 -0.33 -9.77 16 15 C 0.53 9.77 7.85 -10.99 -0.09 9.69 16 16 O -0.52 -11.58 15.86 5.56 0.09 -11.49 16 17 C -0.15 -3.12 6.16 36.01 0.22 -2.89 16 18 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 19 C -0.54 -15.38 9.50 30.94 0.29 -15.08 16 20 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 21 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 22 N -0.87 -26.27 13.22 55.49 0.73 -25.53 16 23 Si 0.92 21.57 29.55 -169.99 -5.02 16.54 16 24 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 27 C 0.11 0.94 6.45 -2.12 -0.01 0.93 16 28 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.05 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 32 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 33 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.09 0.41 7.92 -51.93 -0.41 -0.01 16 35 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.08 0.28 7.09 -51.93 -0.37 -0.09 16 37 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.06 0.29 8.13 -51.93 -0.42 -0.13 16 39 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.07 0.77 7.99 -51.93 -0.42 0.36 16 42 H 0.40 4.12 8.47 -40.82 -0.35 3.77 16 43 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 44 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 45 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 46 H 0.08 0.70 7.94 -51.93 -0.41 0.29 16 47 H 0.09 0.89 7.85 -51.93 -0.41 0.48 16 LS Contribution 399.68 15.07 6.02 6.02 Total: -1.00 -36.61 399.68 -9.30 -45.91 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -8.21 Total: -1.84 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: 0.10 Total: -2.80 kcal Atomic # 7 Polarization: -40.84 SS G_CDS: -0.15 Total: -40.99 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: 0.18 Total: -19.00 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.61 -9.30 -45.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051791336.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.567 kcal (2) G-P(sol) polarization free energy of solvation -36.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds