Wall clock time and date at job start Tue Mar 31 2020 15:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46907 * 2 1 4 4 C 1.50703 * 109.47030 * 179.97438 * 3 2 1 5 5 O 1.21281 * 120.00212 * 359.97438 * 4 3 2 6 6 N 1.34774 * 120.00028 * 180.02562 * 4 3 2 7 7 C 1.47492 * 127.03342 * 0.02562 * 6 4 3 8 8 C 1.54001 * 107.08521 * 205.41294 * 7 6 4 9 9 H 1.08998 * 110.32898 * 239.70193 * 8 7 6 10 10 C 1.52997 * 110.32967 * 117.58598 * 8 7 6 11 11 C 1.54621 * 105.04510 * 358.69336 * 8 7 6 12 12 H 1.08990 * 110.73922 * 96.48898 * 11 8 7 13 13 C 1.53001 * 110.74019 * 219.81869 * 11 8 7 14 14 N 1.46504 * 109.47081 * 185.00176 * 13 11 8 15 15 C 1.34771 * 119.99820 * 179.97438 * 14 13 11 16 16 O 1.21283 * 120.00255 * 359.97438 * 15 14 13 17 17 C 1.50705 * 119.99871 * 179.97438 * 15 14 13 18 18 S 1.80993 * 109.47158 * 180.02562 * 17 15 14 19 19 C 1.76198 * 100.00034 * 180.02562 * 18 17 15 20 20 H 1.07999 * 119.99879 * 0.02562 * 19 18 17 21 21 C 1.38801 * 119.99933 * 179.97438 * 19 18 17 22 22 N 1.31629 * 120.00090 * 0.02562 * 21 19 18 23 23 Si 1.86809 * 119.99838 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46946 * 60.00448 * 23 21 19 25 25 H 1.48493 * 109.46813 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47058 * 300.00375 * 23 21 19 27 27 C 1.48119 * 127.03509 * 179.97438 * 6 4 3 28 28 H 1.09004 * 109.47460 * 60.00127 * 1 2 3 29 29 H 1.09000 * 109.47221 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47381 * 299.99797 * 1 2 3 31 31 H 1.08999 * 109.47381 * 240.00203 * 2 1 3 32 32 H 1.09004 * 109.47460 * 119.99873 * 2 1 3 33 33 H 1.09005 * 109.47234 * 60.00260 * 3 2 1 34 34 H 1.08997 * 109.47360 * 299.99665 * 3 2 1 35 35 H 1.09003 * 109.91034 * 86.05153 * 7 6 4 36 36 H 1.08997 * 110.07386 * 324.86109 * 7 6 4 37 37 H 1.09002 * 109.47153 * 61.45250 * 10 8 7 38 38 H 1.09001 * 109.46832 * 301.45441 * 10 8 7 39 39 H 1.09004 * 109.47261 * 181.45423 * 10 8 7 40 40 H 1.09001 * 109.46729 * 304.99809 * 13 11 8 41 41 H 1.08995 * 109.47342 * 64.99988 * 13 11 8 42 42 H 0.96995 * 119.99637 * 359.97438 * 14 13 11 43 43 H 1.08998 * 109.46837 * 299.99976 * 17 15 14 44 44 H 1.09002 * 109.46750 * 59.99804 * 17 15 14 45 45 H 0.97006 * 120.00153 * 180.02562 * 22 21 19 46 46 H 1.08999 * 110.66058 * 259.18283 * 27 6 4 47 47 H 1.08994 * 110.66288 * 22.30353 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4426 0.0006 5 8 4.1534 0.3923 0.0015 6 7 4.2208 2.6098 0.0013 7 6 3.6453 3.9678 0.0020 8 6 4.6929 4.9035 -0.6292 9 1 4.9809 5.6813 0.0780 10 6 4.1420 5.5300 -1.9117 11 6 5.9010 3.9939 -0.9518 12 1 5.8737 3.6706 -1.9922 13 6 7.2167 4.7096 -0.6395 14 7 8.3411 3.8724 -1.0653 15 6 9.6061 4.3025 -0.8890 16 8 9.8138 5.3827 -0.3782 17 6 10.7627 3.4410 -1.3264 18 16 12.3191 4.2877 -0.9571 19 6 13.4671 3.0921 -1.5548 20 1 13.1097 2.1697 -1.9881 21 6 14.8309 3.3363 -1.4698 22 7 15.2665 4.4607 -0.9422 23 14 16.0480 2.0684 -2.1029 24 1 15.8144 1.8381 -3.5512 25 1 17.4321 2.5652 -1.8970 26 1 15.8648 0.7939 -1.3631 27 6 5.6908 2.7912 0.0025 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.4354 4.2815 1.0246 36 1 2.7285 3.9858 -0.5873 37 1 3.2606 6.1261 -1.6754 38 1 3.8699 4.7415 -2.6134 39 1 4.9031 6.1687 -2.3601 40 1 7.2489 5.6597 -1.1727 41 1 7.2854 4.8922 0.4329 42 1 8.1749 3.0086 -1.4740 43 1 10.7306 2.4913 -0.7926 44 1 10.6938 3.2576 -2.3987 45 1 16.2196 4.6316 -0.8831 46 1 6.0483 3.0282 1.0045 47 1 6.1884 1.9019 -0.3842 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051791336.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:44 Heat of formation + Delta-G solvation = -119.535493 kcal Electronic energy + Delta-G solvation = -25107.005299 eV Core-core repulsion = 21414.005510 eV Total energy + Delta-G solvation = -3692.999790 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.37261 -40.53447 -39.10273 -35.91364 -35.30379 -34.59153 -33.84121 -32.01317 -30.52774 -28.96831 -27.68792 -27.24509 -26.38724 -23.35199 -22.46687 -21.86712 -21.06881 -20.17171 -19.75241 -18.11839 -17.80960 -17.60887 -16.93829 -16.88658 -16.82016 -16.47015 -15.97360 -15.63769 -15.42453 -14.99421 -14.69027 -14.55750 -14.33976 -14.22708 -13.95946 -13.84043 -13.61718 -13.25053 -13.17857 -12.97581 -12.88498 -12.87096 -12.68651 -12.64125 -12.52397 -12.06216 -11.92154 -11.78662 -11.71723 -11.66915 -11.59555 -11.13826 -10.95255 -10.89512 -10.29614 -10.13491 -9.74448 -8.67221 -8.35298 -6.13335 1.26134 1.42999 1.45760 1.55941 1.59259 1.60317 1.92714 2.24978 2.29138 2.98591 3.29372 3.37888 3.45742 3.66911 3.79457 3.96757 3.99556 4.08408 4.16744 4.23188 4.27728 4.29467 4.47196 4.50173 4.54020 4.63693 4.65857 4.69267 4.71788 4.76276 4.79394 4.87062 4.91646 5.04579 5.09097 5.13835 5.23310 5.26494 5.34524 5.40726 5.41641 5.45757 5.50082 6.18840 6.45761 6.52126 7.05878 7.11683 7.21610 8.73594 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019252 B = 0.002010 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.080150 B =13927.957104 C =15076.691713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.112 4.112 3 C -0.126 4.126 4 C 0.520 3.480 5 O -0.594 6.594 6 N -0.623 5.623 7 C 0.102 3.898 8 C -0.094 4.094 9 H 0.100 0.900 10 C -0.142 4.142 11 C -0.095 4.095 12 H 0.096 0.904 13 C 0.133 3.867 14 N -0.716 5.716 15 C 0.535 3.465 16 O -0.563 6.563 17 C -0.133 4.133 18 S -0.147 6.147 19 C -0.549 4.549 20 H 0.081 0.919 21 C 0.014 3.986 22 N -0.910 5.910 23 Si 0.997 3.003 24 H -0.262 1.262 25 H -0.277 1.277 26 H -0.264 1.264 27 C 0.102 3.898 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.085 0.915 36 H 0.102 0.898 37 H 0.077 0.923 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.413 0.587 43 H 0.106 0.894 44 H 0.109 0.891 45 H 0.272 0.728 46 H 0.073 0.927 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.391 -2.607 -0.766 34.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.150 4.150 3 C -0.166 4.166 4 C 0.311 3.689 5 O -0.474 6.474 6 N -0.356 5.356 7 C -0.020 4.020 8 C -0.113 4.113 9 H 0.118 0.882 10 C -0.199 4.199 11 C -0.115 4.115 12 H 0.114 0.886 13 C 0.010 3.990 14 N -0.369 5.369 15 C 0.321 3.679 16 O -0.442 6.442 17 C -0.284 4.284 18 S 0.080 5.920 19 C -0.697 4.697 20 H 0.099 0.901 21 C -0.190 4.190 22 N -0.546 5.546 23 Si 0.819 3.181 24 H -0.187 1.187 25 H -0.202 1.202 26 H -0.188 1.188 27 C -0.021 4.021 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.133 0.867 34 H 0.136 0.864 35 H 0.104 0.896 36 H 0.121 0.879 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.249 0.751 43 H 0.125 0.875 44 H 0.127 0.873 45 H 0.080 0.920 46 H 0.091 0.909 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -33.698 -1.340 0.140 33.725 hybrid contribution 1.109 -2.182 -0.883 2.602 sum -32.588 -3.522 -0.742 32.787 Atomic orbital electron populations 1.21748 0.93430 1.02370 1.02857 1.21278 0.96915 0.94961 1.01843 1.21742 0.88282 1.00066 1.06474 1.21214 0.91634 0.81433 0.74591 1.90708 1.71773 1.32438 1.52518 1.48941 1.07447 1.06645 1.72592 1.22472 0.97639 0.79322 1.02523 1.22089 0.92898 0.96995 0.99329 0.88223 1.21854 1.01687 1.00811 0.95561 1.22504 0.93465 0.95056 1.00489 0.88565 1.21396 0.83407 0.93961 1.00261 1.45809 1.04301 1.23209 1.63619 1.19983 0.84317 0.85937 0.77640 1.90690 1.85364 1.23727 1.44394 1.23396 0.96476 1.02772 1.05748 1.85505 0.95943 1.29022 1.81562 1.23177 0.93640 1.06038 1.46856 0.90067 1.26112 0.99704 0.98344 0.94886 1.70171 1.15692 1.25603 1.43149 0.85021 0.76295 0.77720 0.79067 1.18666 1.20240 1.18825 1.22546 0.81515 0.98263 0.99782 0.91481 0.92538 0.91566 0.93059 0.93188 0.86651 0.86443 0.89648 0.87934 0.90387 0.92428 0.92555 0.91090 0.91690 0.75059 0.87543 0.87297 0.91952 0.90885 0.91412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 71.98 0.71 -0.38 16 2 C -0.11 -1.44 5.22 30.59 0.16 -1.28 16 3 C -0.13 -1.24 4.78 29.85 0.14 -1.10 16 4 C 0.52 9.71 7.89 87.66 0.69 10.40 16 5 O -0.59 -17.21 16.19 -3.03 -0.05 -17.26 16 6 N -0.62 -9.15 3.29 -809.35 -2.66 -11.81 16 7 C 0.10 0.71 6.42 86.53 0.56 1.26 16 8 C -0.09 -0.76 3.17 -9.90 -0.03 -0.79 16 9 H 0.10 0.74 7.85 -2.39 -0.02 0.72 16 10 C -0.14 -0.91 8.89 71.98 0.64 -0.27 16 11 C -0.10 -1.25 2.62 -9.57 -0.03 -1.28 16 12 H 0.10 1.24 7.86 -2.39 -0.02 1.22 16 13 C 0.13 2.60 4.99 86.38 0.43 3.03 16 14 N -0.72 -17.52 5.47 -463.05 -2.54 -20.05 16 15 C 0.54 19.56 7.85 87.66 0.69 20.25 16 16 O -0.56 -25.69 15.86 -3.04 -0.05 -25.74 16 17 C -0.13 -5.32 6.16 71.24 0.44 -4.88 16 18 S -0.15 -8.25 20.57 -56.49 -1.16 -9.41 16 19 C -0.55 -31.76 9.50 67.95 0.65 -31.12 16 20 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 21 C 0.01 0.83 5.49 84.86 0.47 1.30 16 22 N -0.91 -56.20 13.22 21.65 0.29 -55.92 16 23 Si 1.00 44.09 29.55 68.60 2.03 46.11 16 24 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 25 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 26 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 27 C 0.10 1.71 6.45 86.74 0.56 2.27 16 28 H 0.07 0.36 8.14 -2.38 -0.02 0.34 16 29 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.05 0.83 8.10 -2.39 -0.02 0.81 16 32 H 0.05 0.82 8.10 -2.38 -0.02 0.81 16 33 H 0.12 0.63 8.14 -2.38 -0.02 0.61 16 34 H 0.12 0.58 7.92 -2.39 -0.02 0.56 16 35 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.10 0.26 7.09 -2.39 -0.02 0.24 16 37 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 38 H 0.06 0.39 8.13 -2.39 -0.02 0.37 16 39 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 40 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.06 1.39 7.99 -2.39 -0.02 1.37 16 42 H 0.41 7.90 8.47 -92.71 -0.79 7.12 16 43 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 44 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 45 H 0.27 15.58 8.31 -92.70 -0.77 14.81 16 46 H 0.07 1.29 7.94 -2.39 -0.02 1.27 16 47 H 0.07 1.40 7.85 -2.39 -0.02 1.38 16 Total: -1.00 -83.52 399.68 2.09 -81.43 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 0.16 Total: 15.23 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: 6.08 Total: -2.58 kcal Atomic # 7 Polarization: -82.87 SS G_CDS: -4.91 Total: -87.78 kcal Atomic # 8 Polarization: -42.90 SS G_CDS: -0.10 Total: -43.00 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 16 Polarization: -8.25 SS G_CDS: -1.16 Total: -9.41 kcal Total: -83.52 2.09 -81.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051791336.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.105 kcal (2) G-P(sol) polarization free energy of solvation -83.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds