Wall clock time and date at job start Tue Mar 31 2020 15:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47051 * 2 1 4 4 C 1.50706 * 109.47346 * 179.97438 * 3 2 1 5 5 O 1.21277 * 119.99730 * 359.97438 * 4 3 2 6 6 N 1.34772 * 119.99966 * 179.97438 * 4 3 2 7 7 C 1.46500 * 119.99664 * 179.97438 * 6 4 3 8 8 C 1.53001 * 109.47276 * 180.02562 * 7 6 4 9 9 H 1.09009 * 110.65858 * 51.80465 * 8 7 6 10 10 C 1.54602 * 110.83147 * 288.56426 * 8 7 6 11 11 N 1.48119 * 103.42045 * 204.44401 * 10 8 7 12 12 C 1.34775 * 127.02918 * 219.28704 * 11 10 8 13 13 O 1.21282 * 120.00577 * 359.70755 * 12 11 10 14 14 C 1.50703 * 119.99768 * 179.71338 * 12 11 10 15 15 S 1.81000 * 109.47038 * 179.97438 * 14 12 11 16 16 C 1.76199 * 99.99871 * 179.97438 * 15 14 12 17 17 H 1.08004 * 120.00439 * 359.97438 * 16 15 14 18 18 C 1.38803 * 119.99949 * 180.02562 * 16 15 14 19 19 N 1.31625 * 120.00229 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99759 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46845 * 180.02562 * 20 18 16 22 22 H 1.48503 * 109.47399 * 299.99573 * 20 18 16 23 23 H 1.48498 * 109.47295 * 60.00179 * 20 18 16 24 24 C 1.47482 * 105.93221 * 39.02253 * 11 10 8 25 25 C 1.54003 * 107.08707 * 334.77791 * 24 11 10 26 26 H 1.08999 * 110.32481 * 242.41659 * 25 24 11 27 27 C 1.53000 * 110.32465 * 120.29515 * 25 24 11 28 28 H 1.09006 * 109.46786 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47147 * 299.99956 * 1 2 3 30 30 H 1.09000 * 109.47309 * 60.00600 * 1 2 3 31 31 H 1.09005 * 109.47349 * 239.99640 * 2 1 3 32 32 H 1.09003 * 109.47202 * 120.00346 * 2 1 3 33 33 H 1.08995 * 109.47408 * 59.99571 * 3 2 1 34 34 H 1.09008 * 109.47197 * 299.99786 * 3 2 1 35 35 H 0.96993 * 120.00565 * 0.02562 * 6 4 3 36 36 H 1.08995 * 109.47200 * 60.00232 * 7 6 4 37 37 H 1.09000 * 109.47480 * 300.00084 * 7 6 4 38 38 H 1.08998 * 110.61864 * 85.93105 * 10 8 7 39 39 H 1.08998 * 110.54837 * 322.92333 * 10 8 7 40 40 H 1.09000 * 109.47235 * 59.99532 * 14 12 11 41 41 H 1.09005 * 109.46867 * 299.99572 * 14 12 11 42 42 H 0.97000 * 120.00071 * 359.97438 * 19 18 16 43 43 H 1.09000 * 109.91271 * 94.14189 * 24 11 10 44 44 H 1.09001 * 109.91035 * 215.41415 * 24 11 10 45 45 H 1.09007 * 109.46836 * 61.45989 * 27 25 24 46 46 H 1.09003 * 109.46620 * 181.45150 * 27 25 24 47 47 H 1.08992 * 109.47657 * 301.45475 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4425 0.0006 5 8 4.1534 0.3922 0.0015 6 7 4.2208 2.6097 0.0002 7 6 5.6858 2.6097 0.0014 8 6 6.1958 4.0522 0.0013 9 1 5.7288 4.6253 0.8023 10 6 5.9465 4.7234 -1.3689 11 7 6.9724 5.7906 -1.4207 12 6 6.8222 7.0378 -1.9090 13 8 5.7567 7.3826 -2.3745 14 6 7.9783 8.0039 -1.8765 15 16 7.4660 9.5823 -2.5993 16 6 8.9648 10.4943 -2.4361 17 1 9.8332 10.0311 -1.9913 18 6 9.0292 11.8084 -2.8784 19 7 7.9709 12.3731 -3.4201 20 14 10.6184 12.7749 -2.7061 21 1 10.4267 14.1436 -3.2496 22 1 10.9927 12.8605 -1.2716 23 1 11.6989 12.0894 -3.4597 24 6 8.1898 5.2113 -0.8229 25 6 7.7363 4.0883 0.1286 26 1 8.0263 4.3203 1.1534 27 6 8.3390 2.7501 -0.3035 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6766 1.9563 -0.8901 35 1 3.7359 3.4497 -0.0001 36 1 6.0499 2.0952 -0.8878 37 1 6.0485 2.0966 0.8921 38 1 4.9446 5.1507 -1.4104 39 1 6.0945 4.0081 -2.1779 40 1 8.8099 7.5948 -2.4503 41 1 8.2915 8.1611 -0.8444 42 1 7.1460 11.8709 -3.5106 43 1 8.8279 4.8001 -1.6050 44 1 8.7290 5.9762 -0.2641 45 1 9.4264 2.8092 -0.2566 46 1 7.9889 1.9619 0.3631 47 1 8.0311 2.5257 -1.3247 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052044422.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:25 Heat of formation + Delta-G solvation = -97.378469 kcal Electronic energy + Delta-G solvation = -25268.673949 eV Core-core repulsion = 21576.634960 eV Total energy + Delta-G solvation = -3692.038989 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.56747 -39.75143 -37.98131 -35.25412 -34.66278 -33.05483 -32.55749 -30.84065 -29.56432 -28.19120 -26.66673 -25.61245 -24.80499 -23.15527 -22.13194 -20.75582 -19.67173 -19.43728 -18.27648 -17.27911 -17.08707 -16.59641 -16.33560 -15.77239 -15.58617 -15.29656 -14.62373 -14.51424 -14.22599 -13.89324 -13.85815 -13.53945 -13.47836 -13.27999 -12.89698 -12.79967 -12.48718 -12.37747 -12.30577 -12.19033 -12.12057 -11.99225 -11.84819 -11.58007 -11.20869 -11.13770 -11.10727 -10.94275 -10.86541 -10.19542 -10.14721 -9.61636 -9.58061 -9.41856 -9.04385 -8.71172 -8.26080 -6.71139 -6.65036 -4.03399 2.32550 2.71308 2.81300 2.88838 3.30096 3.35803 3.41080 3.55862 4.07621 4.13497 4.22904 4.33972 4.38566 4.50133 4.59710 4.70003 4.84504 4.90747 4.95881 5.03456 5.08988 5.11766 5.19528 5.21472 5.22357 5.28767 5.32637 5.35080 5.40956 5.48715 5.56666 5.64592 5.66419 5.69089 5.73246 5.75571 5.78258 5.91673 5.95268 5.97559 6.08816 6.21856 7.11992 7.54484 7.88370 7.88640 8.38330 8.47037 9.24015 10.78804 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.023705 B = 0.002037 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.898999 B =13740.781340 C =14754.657718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.109 4.109 3 C -0.143 4.143 4 C 0.512 3.488 5 O -0.543 6.543 6 N -0.734 5.734 7 C 0.130 3.870 8 C -0.114 4.114 9 H 0.091 0.909 10 C 0.112 3.888 11 N -0.628 5.628 12 C 0.552 3.448 13 O -0.517 6.517 14 C -0.125 4.125 15 S -0.116 6.116 16 C -0.608 4.608 17 H 0.066 0.934 18 C 0.036 3.964 19 N -0.883 5.883 20 Si 1.084 2.916 21 H -0.277 1.277 22 H -0.285 1.285 23 H -0.285 1.285 24 C 0.104 3.896 25 C -0.095 4.095 26 H 0.088 0.912 27 C -0.151 4.151 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.402 0.598 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.278 0.722 43 H 0.071 0.929 44 H 0.078 0.922 45 H 0.062 0.938 46 H 0.064 0.936 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.808 -24.196 10.108 27.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.183 4.183 4 C 0.299 3.701 5 O -0.420 6.420 6 N -0.386 5.386 7 C 0.007 3.993 8 C -0.134 4.134 9 H 0.109 0.891 10 C -0.011 4.011 11 N -0.364 5.364 12 C 0.340 3.660 13 O -0.391 6.391 14 C -0.276 4.276 15 S 0.110 5.890 16 C -0.756 4.756 17 H 0.084 0.916 18 C -0.175 4.175 19 N -0.517 5.517 20 Si 0.910 3.090 21 H -0.202 1.202 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.020 4.020 25 C -0.114 4.114 26 H 0.107 0.893 27 C -0.208 4.208 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.237 0.763 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.097 0.903 45 H 0.081 0.919 46 H 0.083 0.917 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.275 -22.843 9.051 25.625 hybrid contribution 0.622 -1.415 0.952 1.815 sum -6.652 -24.258 10.003 27.069 Atomic orbital electron populations 1.21800 0.95413 1.02017 1.01887 1.21275 0.95331 0.94593 1.03515 1.21747 0.91589 1.00352 1.04599 1.20793 0.90443 0.83425 0.75476 1.90704 1.70627 1.31320 1.49314 1.46136 1.07550 1.08978 1.75955 1.21451 0.79365 0.95656 1.02877 1.22533 0.96530 0.95499 0.98797 0.89095 1.22363 0.93787 0.89231 0.95765 1.48752 1.13505 1.11700 1.62490 1.19985 0.89594 0.79969 0.76431 1.90710 1.28220 1.75717 1.44426 1.23293 0.99016 0.99950 1.05294 1.84817 1.20825 1.03839 1.79495 1.23692 0.97784 1.02662 1.51438 0.91610 1.26061 1.04210 0.94374 0.92847 1.70801 1.02636 1.39662 1.38613 0.83330 0.73053 0.76064 0.76565 1.20244 1.21130 1.21113 1.22214 0.87931 0.95685 0.96161 1.22019 0.93617 0.95575 1.00224 0.89318 1.21966 1.01108 0.95840 1.01879 0.92385 0.92653 0.92588 0.91246 0.91306 0.88848 0.88722 0.76336 0.90682 0.90854 0.89835 0.91109 0.89011 0.89024 0.91000 0.91095 0.90345 0.91918 0.91711 0.92088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.91 37.16 0.37 -0.42 16 2 C -0.11 -0.73 5.22 -26.73 -0.14 -0.87 16 3 C -0.14 -0.85 5.70 -27.88 -0.16 -1.01 16 4 C 0.51 4.53 7.83 -10.98 -0.09 4.44 16 5 O -0.54 -6.91 15.98 5.56 0.09 -6.82 16 6 N -0.73 -5.27 5.47 -60.30 -0.33 -5.60 16 7 C 0.13 0.97 3.86 -4.04 -0.02 0.96 16 8 C -0.11 -0.87 2.99 -88.93 -0.27 -1.14 16 9 H 0.09 0.70 8.14 -51.92 -0.42 0.27 16 10 C 0.11 1.19 6.44 -2.31 -0.01 1.17 16 11 N -0.63 -8.54 3.29 -169.98 -0.56 -9.10 16 12 C 0.55 10.36 7.91 -10.98 -0.09 10.28 16 13 O -0.52 -11.64 16.07 5.56 0.09 -11.56 16 14 C -0.12 -2.53 5.23 36.01 0.19 -2.34 16 15 S -0.12 -3.12 19.60 -107.50 -2.11 -5.23 16 16 C -0.61 -17.44 9.50 30.94 0.29 -17.15 16 17 H 0.07 1.80 7.80 -52.48 -0.41 1.39 16 18 C 0.04 1.03 5.49 -17.43 -0.10 0.94 16 19 N -0.88 -27.37 13.67 55.49 0.76 -26.61 16 20 Si 1.08 24.75 29.92 -169.99 -5.09 19.67 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 24 C 0.10 1.04 6.42 -2.98 -0.02 1.02 16 25 C -0.09 -0.69 3.53 -89.25 -0.31 -1.01 16 26 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 27 C -0.15 -0.95 7.79 37.16 0.29 -0.66 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.55 8.10 -51.93 -0.42 0.12 16 32 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 33 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.09 0.45 8.14 -51.92 -0.42 0.02 16 35 H 0.40 2.16 8.47 -40.82 -0.35 1.82 16 36 H 0.07 0.62 6.81 -51.93 -0.35 0.27 16 37 H 0.07 0.57 7.37 -51.93 -0.38 0.19 16 38 H 0.08 0.96 7.85 -51.93 -0.41 0.55 16 39 H 0.07 0.72 7.93 -51.93 -0.41 0.31 16 40 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 41 H 0.09 1.73 7.91 -51.91 -0.41 1.32 16 42 H 0.28 8.79 7.13 -40.82 -0.29 8.50 16 43 H 0.07 0.67 7.68 -51.93 -0.40 0.27 16 44 H 0.08 0.78 7.54 -51.93 -0.39 0.39 16 45 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 46 H 0.06 0.38 6.76 -51.93 -0.35 0.03 16 47 H 0.06 0.41 7.51 -51.93 -0.39 0.02 16 LS Contribution 393.39 15.07 5.93 5.93 Total: -1.00 -36.73 393.39 -9.26 -45.99 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -7.99 Total: -0.88 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -0.06 Total: -5.80 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: -0.13 Total: -41.31 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: 0.18 Total: -18.37 kcal Atomic # 14 Polarization: 24.75 SS G_CDS: -5.09 Total: 19.67 kcal Atomic # 16 Polarization: -3.12 SS G_CDS: -2.11 Total: -5.23 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.73 -9.26 -45.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052044422.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.385 kcal (2) G-P(sol) polarization free energy of solvation -36.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds