Wall clock time and date at job start Tue Mar 31 2020 15:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47051 * 2 1 4 4 C 1.50706 * 109.47346 * 179.97438 * 3 2 1 5 5 O 1.21277 * 119.99730 * 359.97438 * 4 3 2 6 6 N 1.34772 * 119.99966 * 179.97438 * 4 3 2 7 7 C 1.46500 * 119.99664 * 179.97438 * 6 4 3 8 8 C 1.53001 * 109.47276 * 180.02562 * 7 6 4 9 9 H 1.09009 * 110.65858 * 51.80465 * 8 7 6 10 10 C 1.54602 * 110.83147 * 288.56426 * 8 7 6 11 11 N 1.48119 * 103.42045 * 204.44401 * 10 8 7 12 12 C 1.34775 * 127.02918 * 219.28704 * 11 10 8 13 13 O 1.21282 * 120.00577 * 359.70755 * 12 11 10 14 14 C 1.50703 * 119.99768 * 179.71338 * 12 11 10 15 15 S 1.81000 * 109.47038 * 179.97438 * 14 12 11 16 16 C 1.76199 * 99.99871 * 179.97438 * 15 14 12 17 17 H 1.08004 * 120.00439 * 359.97438 * 16 15 14 18 18 C 1.38803 * 119.99949 * 180.02562 * 16 15 14 19 19 N 1.31625 * 120.00229 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99759 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46845 * 180.02562 * 20 18 16 22 22 H 1.48503 * 109.47399 * 299.99573 * 20 18 16 23 23 H 1.48498 * 109.47295 * 60.00179 * 20 18 16 24 24 C 1.47482 * 105.93221 * 39.02253 * 11 10 8 25 25 C 1.54003 * 107.08707 * 334.77791 * 24 11 10 26 26 H 1.08999 * 110.32481 * 242.41659 * 25 24 11 27 27 C 1.53000 * 110.32465 * 120.29515 * 25 24 11 28 28 H 1.09006 * 109.46786 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47147 * 299.99956 * 1 2 3 30 30 H 1.09000 * 109.47309 * 60.00600 * 1 2 3 31 31 H 1.09005 * 109.47349 * 239.99640 * 2 1 3 32 32 H 1.09003 * 109.47202 * 120.00346 * 2 1 3 33 33 H 1.08995 * 109.47408 * 59.99571 * 3 2 1 34 34 H 1.09008 * 109.47197 * 299.99786 * 3 2 1 35 35 H 0.96993 * 120.00565 * 0.02562 * 6 4 3 36 36 H 1.08995 * 109.47200 * 60.00232 * 7 6 4 37 37 H 1.09000 * 109.47480 * 300.00084 * 7 6 4 38 38 H 1.08998 * 110.61864 * 85.93105 * 10 8 7 39 39 H 1.08998 * 110.54837 * 322.92333 * 10 8 7 40 40 H 1.09000 * 109.47235 * 59.99532 * 14 12 11 41 41 H 1.09005 * 109.46867 * 299.99572 * 14 12 11 42 42 H 0.97000 * 120.00071 * 359.97438 * 19 18 16 43 43 H 1.09000 * 109.91271 * 94.14189 * 24 11 10 44 44 H 1.09001 * 109.91035 * 215.41415 * 24 11 10 45 45 H 1.09007 * 109.46836 * 61.45989 * 27 25 24 46 46 H 1.09003 * 109.46620 * 181.45150 * 27 25 24 47 47 H 1.08992 * 109.47657 * 301.45475 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4425 0.0006 5 8 4.1534 0.3922 0.0015 6 7 4.2208 2.6097 0.0002 7 6 5.6858 2.6097 0.0014 8 6 6.1958 4.0522 0.0013 9 1 5.7288 4.6253 0.8023 10 6 5.9465 4.7234 -1.3689 11 7 6.9724 5.7906 -1.4207 12 6 6.8222 7.0378 -1.9090 13 8 5.7567 7.3826 -2.3745 14 6 7.9783 8.0039 -1.8765 15 16 7.4660 9.5823 -2.5993 16 6 8.9648 10.4943 -2.4361 17 1 9.8332 10.0311 -1.9913 18 6 9.0292 11.8084 -2.8784 19 7 7.9709 12.3731 -3.4201 20 14 10.6184 12.7749 -2.7061 21 1 10.4267 14.1436 -3.2496 22 1 10.9927 12.8605 -1.2716 23 1 11.6989 12.0894 -3.4597 24 6 8.1898 5.2113 -0.8229 25 6 7.7363 4.0883 0.1286 26 1 8.0263 4.3203 1.1534 27 6 8.3390 2.7501 -0.3035 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6766 1.9563 -0.8901 35 1 3.7359 3.4497 -0.0001 36 1 6.0499 2.0952 -0.8878 37 1 6.0485 2.0966 0.8921 38 1 4.9446 5.1507 -1.4104 39 1 6.0945 4.0081 -2.1779 40 1 8.8099 7.5948 -2.4503 41 1 8.2915 8.1611 -0.8444 42 1 7.1460 11.8709 -3.5106 43 1 8.8279 4.8001 -1.6050 44 1 8.7290 5.9762 -0.2641 45 1 9.4264 2.8092 -0.2566 46 1 7.9889 1.9619 0.3631 47 1 8.0311 2.5257 -1.3247 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052044422.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:23 Heat of formation + Delta-G solvation = -122.429159 kcal Electronic energy + Delta-G solvation = -25269.760229 eV Core-core repulsion = 21576.634960 eV Total energy + Delta-G solvation = -3693.125268 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.48179 -40.64047 -39.16498 -36.03222 -35.24490 -34.76182 -33.99744 -31.80183 -30.73036 -28.86185 -27.50887 -27.09038 -26.28956 -23.97989 -22.69803 -21.40889 -20.91308 -20.41336 -20.02596 -18.34384 -17.86795 -17.57375 -17.07560 -16.92790 -16.77727 -16.23606 -16.03594 -15.68256 -15.37417 -15.10550 -14.84627 -14.69503 -14.49754 -14.06748 -13.97505 -13.83989 -13.75086 -13.50689 -13.38210 -13.16015 -12.94878 -12.81992 -12.74124 -12.64724 -12.04241 -11.95912 -11.89036 -11.78714 -11.63634 -11.56659 -11.49400 -11.10555 -11.09006 -10.86968 -10.34883 -10.09191 -9.86317 -8.93507 -8.89598 -6.29352 1.11865 1.42812 1.51384 1.60447 1.65264 1.80560 1.94384 2.21475 2.33111 3.01427 3.06288 3.34250 3.39700 3.62955 3.79127 3.83580 4.00721 4.02188 4.10563 4.11673 4.19711 4.27086 4.29640 4.46820 4.54741 4.57836 4.59119 4.68299 4.70498 4.71994 4.77472 4.84320 4.90366 4.99200 5.06353 5.19650 5.21149 5.23093 5.27090 5.41440 5.44317 5.49384 5.62820 6.13660 6.29991 6.52329 6.97489 7.05128 7.24521 8.49866 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.023705 B = 0.002037 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.898999 B =13740.781340 C =14754.657718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.109 4.109 3 C -0.138 4.138 4 C 0.508 3.492 5 O -0.587 6.587 6 N -0.726 5.726 7 C 0.135 3.865 8 C -0.097 4.097 9 H 0.098 0.902 10 C 0.107 3.893 11 N -0.618 5.618 12 C 0.550 3.450 13 O -0.566 6.566 14 C -0.101 4.101 15 S -0.193 6.193 16 C -0.614 4.614 17 H 0.075 0.925 18 C -0.018 4.018 19 N -0.912 5.912 20 Si 1.136 2.864 21 H -0.280 1.280 22 H -0.262 1.262 23 H -0.263 1.263 24 C 0.094 3.906 25 C -0.085 4.085 26 H 0.107 0.893 27 C -0.148 4.148 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.115 0.885 34 H 0.111 0.889 35 H 0.413 0.587 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.106 0.894 41 H 0.109 0.891 42 H 0.260 0.740 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.484 -25.315 11.735 28.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.147 4.147 3 C -0.178 4.178 4 C 0.296 3.704 5 O -0.467 6.467 6 N -0.379 5.379 7 C 0.011 3.989 8 C -0.117 4.117 9 H 0.116 0.884 10 C -0.015 4.015 11 N -0.353 5.353 12 C 0.338 3.662 13 O -0.444 6.444 14 C -0.252 4.252 15 S 0.033 5.967 16 C -0.762 4.762 17 H 0.093 0.907 18 C -0.222 4.222 19 N -0.547 5.547 20 Si 0.954 3.046 21 H -0.205 1.205 22 H -0.187 1.187 23 H -0.188 1.188 24 C -0.029 4.029 25 C -0.105 4.105 26 H 0.125 0.875 27 C -0.205 4.205 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.133 0.867 34 H 0.129 0.871 35 H 0.249 0.751 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.124 0.876 41 H 0.127 0.873 42 H 0.071 0.929 43 H 0.100 0.900 44 H 0.102 0.898 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.945 -24.014 10.712 26.958 hybrid contribution 0.201 -1.234 0.478 1.338 sum -5.744 -25.248 11.190 28.207 Atomic orbital electron populations 1.21770 0.93992 1.02327 1.02614 1.21245 0.96503 0.94927 1.02049 1.21787 0.89452 1.00165 1.06383 1.21302 0.91593 0.82999 0.74506 1.90685 1.71649 1.32849 1.51516 1.46118 1.07600 1.09156 1.74999 1.21380 0.79529 0.95180 1.02765 1.22403 0.97098 0.95279 0.96889 0.88409 1.22584 0.92596 0.88386 0.97983 1.48673 1.15750 1.10407 1.60432 1.19643 0.88328 0.81350 0.76846 1.90690 1.29589 1.77069 1.47085 1.23160 0.99999 0.96434 1.05656 1.85043 1.21995 1.08689 1.80926 1.24026 0.98181 1.03101 1.50864 0.90661 1.27840 1.06709 0.95963 0.91638 1.70920 1.02941 1.39903 1.40959 0.82724 0.69333 0.74511 0.78063 1.20530 1.18706 1.18806 1.22572 0.86673 0.96587 0.97027 1.22015 0.92949 0.95065 1.00448 0.87515 1.21950 1.01666 0.95234 1.01659 0.92372 0.91711 0.92001 0.92952 0.92636 0.86659 0.87103 0.75124 0.91321 0.90475 0.90827 0.90393 0.87559 0.87260 0.92879 0.89995 0.89848 0.90997 0.91047 0.92669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.91 71.98 0.71 -0.62 16 2 C -0.11 -1.41 5.22 30.59 0.16 -1.25 16 3 C -0.14 -1.43 5.70 29.85 0.17 -1.26 16 4 C 0.51 8.43 7.83 87.66 0.69 9.12 16 5 O -0.59 -14.79 15.98 -3.02 -0.05 -14.84 16 6 N -0.73 -9.19 5.47 -463.07 -2.53 -11.72 16 7 C 0.14 1.74 3.86 86.38 0.33 2.08 16 8 C -0.10 -1.25 2.99 -9.70 -0.03 -1.27 16 9 H 0.10 1.20 8.14 -2.38 -0.02 1.19 16 10 C 0.11 2.11 6.44 86.61 0.56 2.66 16 11 N -0.62 -15.86 3.29 -810.08 -2.67 -18.53 16 12 C 0.55 20.47 7.91 87.66 0.69 21.16 16 13 O -0.57 -26.06 16.07 -3.04 -0.05 -26.11 16 14 C -0.10 -4.04 5.23 71.24 0.37 -3.67 16 15 S -0.19 -10.64 19.60 -56.49 -1.11 -11.74 16 16 C -0.61 -35.24 9.50 67.96 0.65 -34.60 16 17 H 0.08 4.04 7.80 -2.91 -0.02 4.01 16 18 C -0.02 -1.06 5.49 84.86 0.47 -0.59 16 19 N -0.91 -57.74 13.67 21.65 0.30 -57.44 16 20 Si 1.14 48.78 29.92 68.60 2.05 50.83 16 21 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 22 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 23 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 24 C 0.09 1.61 6.42 86.53 0.56 2.17 16 25 C -0.09 -0.98 3.53 -9.90 -0.03 -1.01 16 26 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 27 C -0.15 -1.43 7.79 71.98 0.56 -0.87 16 28 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 29 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.06 0.48 8.14 -2.39 -0.02 0.47 16 31 H 0.05 0.84 8.10 -2.38 -0.02 0.82 16 32 H 0.05 0.85 8.10 -2.39 -0.02 0.83 16 33 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.11 0.81 8.14 -2.38 -0.02 0.79 16 35 H 0.41 3.61 8.47 -92.71 -0.79 2.82 16 36 H 0.07 1.02 6.81 -2.39 -0.02 1.01 16 37 H 0.08 1.01 7.37 -2.39 -0.02 0.99 16 38 H 0.07 1.64 7.85 -2.39 -0.02 1.62 16 39 H 0.08 1.47 7.93 -2.39 -0.02 1.45 16 40 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 41 H 0.11 3.95 7.91 -2.39 -0.02 3.93 16 42 H 0.26 17.15 7.13 -92.71 -0.66 16.49 16 43 H 0.08 1.30 7.68 -2.39 -0.02 1.28 16 44 H 0.08 1.40 7.54 -2.39 -0.02 1.38 16 45 H 0.07 0.59 8.14 -2.38 -0.02 0.58 16 46 H 0.07 0.64 6.76 -2.39 -0.02 0.62 16 47 H 0.05 0.62 7.51 -2.39 -0.02 0.60 16 Total: -1.00 -82.73 393.39 2.07 -80.66 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 0.28 Total: 16.84 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: 5.85 Total: -7.94 kcal Atomic # 7 Polarization: -82.79 SS G_CDS: -4.91 Total: -87.69 kcal Atomic # 8 Polarization: -40.85 SS G_CDS: -0.10 Total: -40.95 kcal Atomic # 14 Polarization: 48.78 SS G_CDS: 2.05 Total: 50.83 kcal Atomic # 16 Polarization: -10.64 SS G_CDS: -1.11 Total: -11.74 kcal Total: -82.73 2.07 -80.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052044422.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.772 kcal (2) G-P(sol) polarization free energy of solvation -82.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds