Wall clock time and date at job start Tue Mar 31 2020 15:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47118 * 2 1 4 4 C 1.50699 * 109.46853 * 179.97438 * 3 2 1 5 5 O 1.21281 * 120.00439 * 0.02562 * 4 3 2 6 6 N 1.34782 * 119.99967 * 180.02562 * 4 3 2 7 7 C 1.46493 * 120.00095 * 180.02562 * 6 4 3 8 8 C 1.53006 * 109.46981 * 179.97438 * 7 6 4 9 9 H 1.08997 * 110.36975 * 55.74001 * 8 7 6 10 10 C 1.54004 * 110.32844 * 293.54767 * 8 7 6 11 11 N 1.47480 * 107.08278 * 242.41223 * 10 8 7 12 12 C 1.34777 * 127.03464 * 154.51345 * 11 10 8 13 13 O 1.21278 * 119.99854 * 0.02562 * 12 11 10 14 14 C 1.50703 * 120.00161 * 180.02562 * 12 11 10 15 15 S 1.81002 * 109.47178 * 180.02562 * 14 12 11 16 16 C 1.76198 * 100.00092 * 180.02562 * 15 14 12 17 17 H 1.08004 * 120.00019 * 0.02562 * 16 15 14 18 18 C 1.38795 * 119.99810 * 179.97438 * 16 15 14 19 19 N 1.31626 * 120.00234 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99664 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47405 * 90.00153 * 20 18 16 22 22 H 1.48505 * 109.47032 * 209.99913 * 20 18 16 23 23 H 1.48497 * 109.47409 * 329.99921 * 20 18 16 24 24 C 1.48122 * 105.93303 * 334.78156 * 11 10 8 25 25 C 1.54586 * 103.42537 * 39.02304 * 24 11 10 26 26 H 1.08998 * 110.57866 * 81.16686 * 25 24 11 27 27 C 1.52998 * 110.99277 * 204.37732 * 25 24 11 28 28 H 1.09003 * 109.47051 * 299.99791 * 1 2 3 29 29 H 1.08999 * 109.47404 * 59.99677 * 1 2 3 30 30 H 1.08997 * 109.47610 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47051 * 240.00209 * 2 1 3 32 32 H 1.08999 * 109.47404 * 120.00323 * 2 1 3 33 33 H 1.08999 * 109.46793 * 60.00649 * 3 2 1 34 34 H 1.08992 * 109.47127 * 300.00079 * 3 2 1 35 35 H 0.97002 * 119.99562 * 0.02562 * 6 4 3 36 36 H 1.08997 * 109.47631 * 60.00300 * 7 6 4 37 37 H 1.09002 * 109.47607 * 299.99695 * 7 6 4 38 38 H 1.09000 * 109.91137 * 123.05252 * 10 8 7 39 39 H 1.08998 * 110.06987 * 1.86080 * 10 8 7 40 40 H 1.09002 * 109.47152 * 60.00245 * 14 12 11 41 41 H 1.09001 * 109.46980 * 300.00345 * 14 12 11 42 42 H 0.97005 * 119.99806 * 179.97438 * 19 18 16 43 43 H 1.09004 * 110.66318 * 157.51126 * 24 11 10 44 44 H 1.09006 * 110.65815 * 280.62189 * 24 11 10 45 45 H 1.08997 * 109.47979 * 173.65406 * 27 25 24 46 46 H 1.08999 * 109.46939 * 293.65464 * 27 25 24 47 47 H 1.09001 * 109.47193 * 53.64976 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4425 0.0006 5 8 4.1534 0.3922 0.0006 6 7 4.2209 2.6097 0.0013 7 6 5.6858 2.6097 0.0013 8 6 6.1958 4.0522 0.0014 9 1 5.7799 4.6016 0.8460 10 6 5.8303 4.7490 -1.3224 11 7 7.0968 5.1103 -1.9860 12 6 7.2999 5.2864 -3.3067 13 8 6.3805 5.1475 -4.0853 14 6 8.6692 5.6561 -3.8159 15 16 8.6188 5.8207 -5.6177 16 6 10.2999 6.2435 -5.9335 17 1 10.9991 6.3258 -5.1144 18 6 10.7259 6.4696 -7.2349 19 7 9.8742 6.3677 -8.2333 20 14 12.5084 6.9170 -7.5698 21 1 13.2967 5.6781 -7.7910 22 1 12.5845 7.7748 -8.7797 23 1 13.0610 7.6540 -6.4050 24 6 8.1017 5.2334 -0.9047 25 6 7.7410 4.0756 0.0540 26 1 8.1538 3.1346 -0.3094 27 6 8.2304 4.3672 1.4740 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6766 1.9563 -0.8899 35 1 3.7359 3.4497 0.0017 36 1 6.0493 2.0964 -0.8889 37 1 6.0492 2.0954 0.8911 38 1 5.2476 5.6478 -1.1203 39 1 5.2590 4.0712 -1.9566 40 1 9.3812 4.8777 -3.5416 41 1 8.9780 6.6032 -3.3733 42 1 10.1719 6.5262 -9.1429 43 1 9.1095 5.1049 -1.2997 44 1 8.0057 6.1937 -0.3980 45 1 7.8671 3.5930 2.1498 46 1 9.3202 4.3790 1.4874 47 1 7.8526 5.3375 1.7965 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052044426.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:38 Heat of formation + Delta-G solvation = -94.432538 kcal Electronic energy + Delta-G solvation = -25303.558635 eV Core-core repulsion = 21611.647391 eV Total energy + Delta-G solvation = -3691.911244 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.42727 -39.64176 -37.78543 -35.18039 -34.59744 -32.93296 -32.43884 -31.01158 -29.42241 -28.10672 -26.48492 -25.75861 -25.32414 -22.75642 -21.75553 -20.88732 -20.06320 -19.37049 -17.73665 -17.42245 -16.59982 -16.44292 -16.18951 -15.98745 -15.28959 -14.91024 -14.81470 -14.53165 -14.19315 -14.11783 -13.75004 -13.46133 -13.44132 -13.21035 -13.11740 -12.64324 -12.47011 -12.22120 -12.18259 -12.13838 -12.08073 -11.74086 -11.52733 -11.24356 -11.13109 -11.07595 -11.07062 -11.03188 -10.94625 -10.76828 -10.05659 -9.82731 -9.44835 -9.35302 -9.07717 -8.60645 -8.24885 -6.51688 -6.22597 -3.93515 2.40754 2.84565 2.88223 3.02938 3.21694 3.24917 3.29513 3.58323 4.14238 4.19593 4.22173 4.32515 4.44232 4.55703 4.65671 4.82252 4.93745 4.98448 5.05088 5.08120 5.12556 5.14436 5.15807 5.26734 5.28974 5.37121 5.37933 5.46957 5.51358 5.58172 5.62012 5.70218 5.72553 5.74324 5.81842 5.82121 5.88244 5.97762 5.99135 6.10903 6.12830 6.35185 7.18969 7.58358 7.65205 7.96653 8.34100 8.52254 9.22595 10.84827 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016699 B = 0.002241 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.381569 B =12493.627193 C =13622.050775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.142 4.142 4 C 0.511 3.489 5 O -0.540 6.540 6 N -0.733 5.733 7 C 0.128 3.872 8 C -0.110 4.110 9 H 0.093 0.907 10 C 0.108 3.892 11 N -0.628 5.628 12 C 0.552 3.448 13 O -0.515 6.515 14 C -0.147 4.147 15 S -0.060 6.060 16 C -0.535 4.535 17 H 0.073 0.927 18 C 0.073 3.927 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C 0.105 3.895 25 C -0.099 4.099 26 H 0.088 0.912 27 C -0.141 4.141 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.401 0.599 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.268 0.732 43 H 0.086 0.914 44 H 0.073 0.927 45 H 0.060 0.940 46 H 0.062 0.938 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.360 -5.593 24.062 27.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.182 4.182 4 C 0.297 3.703 5 O -0.417 6.417 6 N -0.385 5.385 7 C 0.005 3.995 8 C -0.130 4.130 9 H 0.111 0.889 10 C -0.015 4.015 11 N -0.365 5.365 12 C 0.341 3.659 13 O -0.389 6.389 14 C -0.297 4.297 15 S 0.166 5.834 16 C -0.683 4.683 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.207 1.207 23 H -0.197 1.197 24 C -0.019 4.019 25 C -0.119 4.119 26 H 0.106 0.894 27 C -0.199 4.199 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.235 0.765 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.078 0.922 43 H 0.104 0.896 44 H 0.092 0.908 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.300 -6.526 22.564 26.993 hybrid contribution 2.025 0.973 0.696 2.352 sum -11.274 -5.553 23.260 26.438 Atomic orbital electron populations 1.21795 0.95436 1.02020 1.01805 1.21282 0.95301 0.94633 1.03601 1.21734 0.91584 1.00363 1.04471 1.20802 0.90438 0.83473 0.75539 1.90717 1.70598 1.31327 1.49058 1.46068 1.07442 1.08871 1.76123 1.21425 0.79524 0.95830 1.02767 1.22458 0.96730 0.95578 0.98225 0.88924 1.22015 0.87660 0.99310 0.92519 1.48783 1.10833 1.71448 1.05481 1.20032 0.90630 0.75852 0.79422 1.90712 1.44450 1.49584 1.54136 1.23506 0.95469 1.04083 1.06650 1.85414 1.14652 1.91106 0.92205 1.22852 0.94954 1.54925 0.95604 0.90920 1.24995 0.98710 0.94840 0.95054 1.70018 1.34549 1.46108 0.99568 0.86162 0.82808 0.78502 0.77990 1.20255 1.20734 1.19692 1.22529 0.93662 0.97999 0.87687 1.22223 0.93586 0.99851 0.96219 0.89361 1.21749 1.01657 1.01860 0.94631 0.92743 0.92564 0.92384 0.91143 0.91321 0.88950 0.88707 0.76480 0.91008 0.91087 0.91750 0.90308 0.89278 0.89276 0.92165 0.89589 0.90836 0.92140 0.91910 0.92213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.91 37.15 0.37 -0.50 16 2 C -0.11 -0.83 5.22 -26.73 -0.14 -0.97 16 3 C -0.14 -0.93 5.70 -27.88 -0.16 -1.09 16 4 C 0.51 5.05 7.83 -10.98 -0.09 4.96 16 5 O -0.54 -7.70 15.98 5.56 0.09 -7.61 16 6 N -0.73 -5.76 5.28 -60.30 -0.32 -6.08 16 7 C 0.13 1.12 4.76 -4.04 -0.02 1.10 16 8 C -0.11 -0.83 2.65 -89.24 -0.24 -1.06 16 9 H 0.09 0.51 7.85 -51.93 -0.41 0.10 16 10 C 0.11 1.18 6.31 -2.98 -0.02 1.16 16 11 N -0.63 -8.76 3.29 -169.98 -0.56 -9.32 16 12 C 0.55 10.64 7.91 -10.98 -0.09 10.55 16 13 O -0.51 -12.00 16.20 5.56 0.09 -11.91 16 14 C -0.15 -3.00 5.09 36.01 0.18 -2.82 16 15 S -0.06 -1.65 20.57 -107.50 -2.21 -3.87 16 16 C -0.54 -15.26 9.50 30.94 0.29 -14.97 16 17 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 18 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 19 N -0.87 -26.21 13.22 55.49 0.73 -25.48 16 20 Si 0.92 21.40 29.55 -169.99 -5.02 16.38 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 24 C 0.10 1.04 6.38 -2.32 -0.01 1.03 16 25 C -0.10 -0.77 3.18 -88.93 -0.28 -1.05 16 26 H 0.09 0.76 7.86 -51.93 -0.41 0.35 16 27 C -0.14 -0.80 9.17 37.16 0.34 -0.46 16 28 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 32 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 33 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.40 2.09 8.32 -40.82 -0.34 1.75 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 1.00 7.49 -51.93 -0.39 0.61 16 40 H 0.09 1.70 7.90 -51.92 -0.41 1.29 16 41 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 42 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 43 H 0.09 0.87 7.23 -51.93 -0.38 0.50 16 44 H 0.07 0.63 8.02 -51.93 -0.42 0.21 16 45 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.06 0.30 8.11 -51.93 -0.42 -0.12 16 LS Contribution 399.18 15.07 6.02 6.02 Total: -1.00 -36.97 399.18 -9.34 -46.31 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -8.20 Total: -2.33 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: 0.05 Total: -2.12 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: -0.14 Total: -40.88 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: 0.18 Total: -19.51 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.97 -9.34 -46.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052044426.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.125 kcal (2) G-P(sol) polarization free energy of solvation -36.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds