Wall clock time and date at job start Tue Mar 31 2020 15:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46838 * 2 1 4 4 C 1.50701 * 109.46910 * 179.97438 * 3 2 1 5 5 O 1.21288 * 120.00095 * 359.97438 * 4 3 2 6 6 N 1.34781 * 120.00374 * 179.97438 * 4 3 2 7 7 C 1.47026 * 125.64203 * 0.02595 * 6 4 3 8 8 C 1.54321 * 107.26791 * 181.03648 * 7 6 4 9 9 C 1.55448 * 102.96961 * 22.19024 * 8 7 6 10 10 H 1.09004 * 111.00873 * 82.52495 * 9 8 7 11 11 C 1.53000 * 111.11787 * 206.45980 * 9 8 7 12 12 C 1.52999 * 109.47498 * 287.10758 * 11 9 8 13 13 N 1.46496 * 109.47049 * 180.02562 * 12 11 9 14 14 C 1.34783 * 119.99889 * 180.02562 * 13 12 11 15 15 O 1.21278 * 119.99608 * 359.97438 * 14 13 12 16 16 C 1.50699 * 119.99733 * 179.97438 * 14 13 12 17 17 S 1.81002 * 109.46913 * 179.97438 * 16 14 13 18 18 C 1.76200 * 100.00041 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00072 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99911 * 179.97438 * 18 17 16 21 21 N 1.31629 * 120.00129 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99745 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47344 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46929 * 120.00608 * 22 20 18 25 25 H 1.48504 * 109.46850 * 240.00429 * 22 20 18 26 26 C 1.47419 * 125.65221 * 179.97438 * 6 4 3 27 27 H 1.08996 * 109.47731 * 300.00221 * 1 2 3 28 28 H 1.09005 * 109.47291 * 60.00392 * 1 2 3 29 29 H 1.09006 * 109.47009 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47353 * 239.99400 * 2 1 3 31 31 H 1.09007 * 109.46836 * 119.99846 * 2 1 3 32 32 H 1.09001 * 109.47570 * 60.00000 * 3 2 1 33 33 H 1.08995 * 109.47270 * 299.99210 * 3 2 1 34 34 H 1.08998 * 109.88266 * 300.45023 * 7 6 4 35 35 H 1.08997 * 109.88244 * 61.46381 * 7 6 4 36 36 H 1.08998 * 110.71927 * 140.55469 * 8 7 6 37 37 H 1.08998 * 110.72073 * 263.64892 * 8 7 6 38 38 H 1.09000 * 109.46992 * 47.10533 * 11 9 8 39 39 H 1.08997 * 109.46670 * 167.10273 * 11 9 8 40 40 H 1.09000 * 109.46815 * 299.99883 * 12 11 9 41 41 H 1.08998 * 109.47078 * 59.99843 * 12 11 9 42 42 H 0.97003 * 120.00447 * 359.97438 * 13 12 11 43 43 H 1.09000 * 109.47398 * 299.99547 * 16 14 13 44 44 H 1.08998 * 109.47282 * 59.99989 * 16 14 13 45 45 H 0.96994 * 120.00103 * 179.97438 * 21 20 18 46 46 H 1.09002 * 110.36926 * 274.73432 * 26 6 4 47 47 H 1.08995 * 110.36556 * 36.94716 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4425 0.0006 5 8 4.1534 0.3922 0.0015 6 7 4.2209 2.6097 0.0002 7 6 3.6146 3.9491 -0.0003 8 6 4.7679 4.9741 -0.0273 9 6 5.9509 4.1528 -0.6125 10 1 5.9015 4.1175 -1.7009 11 6 7.2956 4.7129 -0.1447 12 6 7.5769 6.0329 -0.8654 13 7 8.8647 6.5688 -0.4178 14 6 9.3218 7.7328 -0.9208 15 8 8.6670 8.3361 -1.7442 16 6 10.6463 8.2843 -0.4600 17 16 10.9791 9.8458 -1.3126 18 6 12.5399 10.2546 -0.6044 19 1 12.9899 9.5985 0.1261 20 6 13.1916 11.4192 -0.9861 21 7 12.6434 12.2185 -1.8767 22 14 14.8465 11.8521 -0.2357 23 1 15.2425 10.7975 0.7318 24 1 15.8676 11.9464 -1.3099 25 1 14.7454 13.1564 0.4670 26 6 5.6879 2.7548 0.0013 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 1.6766 1.9564 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 2.9885 4.0723 -0.8840 35 1 3.0156 4.0852 0.9001 36 1 4.5226 5.8137 -0.6777 37 1 4.9979 5.3224 0.9796 38 1 7.2626 4.8861 0.9309 39 1 8.0862 3.9983 -0.3735 40 1 7.6099 5.8596 -1.9410 41 1 6.7863 6.7474 -0.6365 42 1 9.3883 6.0864 0.2411 43 1 10.6135 8.4572 0.6158 44 1 11.4370 7.5699 -0.6892 45 1 13.0986 13.0324 -2.1431 46 1 6.0729 2.7091 1.0200 47 1 6.1463 1.9790 -0.6119 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001059035277.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:02 Heat of formation + Delta-G solvation = -98.705721 kcal Electronic energy + Delta-G solvation = -24315.192371 eV Core-core repulsion = 20623.095828 eV Total energy + Delta-G solvation = -3692.096543 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.56932 -39.23341 -38.23499 -35.34736 -34.81579 -33.05142 -32.43933 -30.47694 -29.74951 -28.77991 -27.21566 -25.49531 -23.91548 -23.07157 -21.97199 -20.93882 -20.16366 -19.55053 -17.86184 -17.54891 -16.86462 -16.30259 -16.15767 -15.86276 -15.60408 -15.41165 -14.81546 -14.62629 -14.29336 -14.06094 -13.89382 -13.74276 -13.43050 -13.15773 -13.11085 -12.83046 -12.57408 -12.48689 -12.38914 -12.19381 -12.05454 -11.74451 -11.60812 -11.43667 -11.21619 -11.12649 -11.08082 -11.03038 -10.97741 -10.76342 -10.21088 -9.81667 -9.42637 -9.08986 -9.08573 -8.90832 -8.24504 -6.51250 -6.22981 -3.93488 2.24383 2.52037 3.02652 3.08327 3.20737 3.27542 3.32156 3.68212 3.87226 4.09261 4.19316 4.27764 4.33810 4.41818 4.52025 4.68061 4.80955 4.85244 4.91536 4.96465 5.01787 5.07892 5.12451 5.13301 5.19083 5.20978 5.26893 5.33946 5.36168 5.44651 5.51770 5.59290 5.60255 5.69142 5.71410 5.81375 5.84895 5.89909 5.90194 5.94864 6.12785 6.59399 7.07259 7.58832 7.68475 7.76219 8.34339 8.59520 9.22630 10.84560 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.053597 B = 0.001471 C = 0.001448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.287866 B =19024.498983 C =19329.230877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.136 4.136 4 C 0.526 3.474 5 O -0.541 6.541 6 N -0.622 5.622 7 C 0.100 3.900 8 C -0.131 4.131 9 C -0.097 4.097 10 H 0.091 0.909 11 C -0.120 4.120 12 C 0.122 3.878 13 N -0.741 5.741 14 C 0.531 3.469 15 O -0.518 6.518 16 C -0.154 4.154 17 S -0.061 6.061 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.110 3.890 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.398 0.602 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.268 0.732 46 H 0.070 0.930 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.958 -21.564 6.328 31.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.176 4.176 4 C 0.315 3.685 5 O -0.419 6.419 6 N -0.357 5.357 7 C -0.023 4.023 8 C -0.169 4.169 9 C -0.116 4.116 10 H 0.109 0.891 11 C -0.158 4.158 12 C -0.002 4.002 13 N -0.395 5.395 14 C 0.317 3.683 15 O -0.392 6.392 16 C -0.305 4.305 17 S 0.165 5.835 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.013 4.013 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.232 0.768 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.078 0.922 46 H 0.088 0.912 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -22.783 -21.032 4.840 31.383 hybrid contribution 2.053 -0.484 1.757 2.745 sum -20.730 -21.517 6.597 30.598 Atomic orbital electron populations 1.21794 0.95338 1.02073 1.01828 1.21295 0.95372 0.94563 1.03594 1.21709 0.91264 1.00249 1.04354 1.20503 0.90216 0.82044 0.75690 1.90719 1.70569 1.30571 1.49993 1.48563 1.07497 1.05913 1.73707 1.22090 0.96638 0.81691 1.01927 1.22832 0.93819 0.97494 1.02714 1.22352 0.94373 0.93796 1.01121 0.89098 1.21712 0.96502 0.96709 1.00908 1.21241 0.85922 0.94035 0.98997 1.46006 1.22343 1.24589 1.46589 1.20311 0.87209 0.79862 0.80886 1.90700 1.58305 1.58272 1.31950 1.23534 0.96147 1.05652 1.05117 1.85395 1.25945 1.16933 1.55190 1.22913 1.05637 1.10719 1.29083 0.90872 1.24990 0.98445 0.95188 0.94930 1.70024 1.38300 1.12304 1.29668 0.86119 0.82048 0.78423 0.78919 1.19611 1.20560 1.20559 1.22264 0.80553 0.97219 1.01239 0.92660 0.92624 0.92317 0.91217 0.91248 0.88961 0.88907 0.91141 0.91181 0.89319 0.90022 0.90734 0.90634 0.91636 0.91522 0.76822 0.89223 0.89218 0.92229 0.91224 0.90253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.91 37.16 0.37 -0.30 16 2 C -0.11 -0.69 5.22 -26.73 -0.14 -0.83 16 3 C -0.14 -0.77 4.89 -27.88 -0.14 -0.91 16 4 C 0.53 4.81 7.85 -10.98 -0.09 4.73 16 5 O -0.54 -7.12 16.24 5.55 0.09 -7.03 16 6 N -0.62 -4.70 3.33 -170.51 -0.57 -5.27 16 7 C 0.10 0.49 6.49 -3.06 -0.02 0.47 16 8 C -0.13 -0.67 5.93 -24.74 -0.15 -0.81 16 9 C -0.10 -0.59 3.02 -88.30 -0.27 -0.85 16 10 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 11 C -0.12 -0.78 4.84 -26.73 -0.13 -0.91 16 12 C 0.12 1.24 5.58 -4.04 -0.02 1.21 16 13 N -0.74 -9.19 5.56 -60.30 -0.33 -9.52 16 14 C 0.53 9.63 7.85 -10.98 -0.09 9.55 16 15 O -0.52 -11.54 15.86 5.56 0.09 -11.45 16 16 C -0.15 -3.04 6.16 36.01 0.22 -2.82 16 17 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 18 C -0.54 -15.16 9.50 30.94 0.29 -14.87 16 19 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 20 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 21 N -0.87 -26.04 13.22 55.49 0.73 -25.30 16 22 Si 0.92 21.28 29.55 -169.99 -5.02 16.25 16 23 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 C 0.11 0.81 6.37 -2.52 -0.02 0.79 16 27 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 31 H 0.07 0.51 8.10 -51.92 -0.42 0.09 16 32 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 36 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.40 7.93 -51.93 -0.41 -0.01 16 38 H 0.07 0.43 7.98 -51.93 -0.41 0.02 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.72 7.76 -51.93 -0.40 0.31 16 42 H 0.40 3.75 8.47 -40.82 -0.35 3.40 16 43 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 44 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 45 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 46 H 0.07 0.50 8.04 -51.93 -0.42 0.08 16 47 H 0.08 0.68 8.03 -51.93 -0.42 0.26 16 LS Contribution 401.12 15.07 6.04 6.04 Total: -1.00 -36.72 401.12 -9.73 -46.46 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -8.29 Total: -2.75 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -0.26 Total: -3.56 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: -0.17 Total: -40.09 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: 0.18 Total: -18.49 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.72 -9.73 -46.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001059035277.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.251 kcal (2) G-P(sol) polarization free energy of solvation -36.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds