Wall clock time and date at job start Tue Mar 31 2020 15:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46838 * 2 1 4 4 C 1.50701 * 109.46910 * 179.97438 * 3 2 1 5 5 O 1.21288 * 120.00095 * 359.97438 * 4 3 2 6 6 N 1.34781 * 120.00374 * 179.97438 * 4 3 2 7 7 C 1.47026 * 125.64203 * 0.02595 * 6 4 3 8 8 C 1.54321 * 107.26791 * 181.03648 * 7 6 4 9 9 C 1.55448 * 102.96961 * 22.19024 * 8 7 6 10 10 H 1.09004 * 111.00873 * 82.52495 * 9 8 7 11 11 C 1.53000 * 111.11787 * 206.45980 * 9 8 7 12 12 C 1.52999 * 109.47498 * 287.10758 * 11 9 8 13 13 N 1.46496 * 109.47049 * 180.02562 * 12 11 9 14 14 C 1.34783 * 119.99889 * 180.02562 * 13 12 11 15 15 O 1.21278 * 119.99608 * 359.97438 * 14 13 12 16 16 C 1.50699 * 119.99733 * 179.97438 * 14 13 12 17 17 S 1.81002 * 109.46913 * 179.97438 * 16 14 13 18 18 C 1.76200 * 100.00041 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00072 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99911 * 179.97438 * 18 17 16 21 21 N 1.31629 * 120.00129 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99745 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47344 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46929 * 120.00608 * 22 20 18 25 25 H 1.48504 * 109.46850 * 240.00429 * 22 20 18 26 26 C 1.47419 * 125.65221 * 179.97438 * 6 4 3 27 27 H 1.08996 * 109.47731 * 300.00221 * 1 2 3 28 28 H 1.09005 * 109.47291 * 60.00392 * 1 2 3 29 29 H 1.09006 * 109.47009 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47353 * 239.99400 * 2 1 3 31 31 H 1.09007 * 109.46836 * 119.99846 * 2 1 3 32 32 H 1.09001 * 109.47570 * 60.00000 * 3 2 1 33 33 H 1.08995 * 109.47270 * 299.99210 * 3 2 1 34 34 H 1.08998 * 109.88266 * 300.45023 * 7 6 4 35 35 H 1.08997 * 109.88244 * 61.46381 * 7 6 4 36 36 H 1.08998 * 110.71927 * 140.55469 * 8 7 6 37 37 H 1.08998 * 110.72073 * 263.64892 * 8 7 6 38 38 H 1.09000 * 109.46992 * 47.10533 * 11 9 8 39 39 H 1.08997 * 109.46670 * 167.10273 * 11 9 8 40 40 H 1.09000 * 109.46815 * 299.99883 * 12 11 9 41 41 H 1.08998 * 109.47078 * 59.99843 * 12 11 9 42 42 H 0.97003 * 120.00447 * 359.97438 * 13 12 11 43 43 H 1.09000 * 109.47398 * 299.99547 * 16 14 13 44 44 H 1.08998 * 109.47282 * 59.99989 * 16 14 13 45 45 H 0.96994 * 120.00103 * 179.97438 * 21 20 18 46 46 H 1.09002 * 110.36926 * 274.73432 * 26 6 4 47 47 H 1.08995 * 110.36556 * 36.94716 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4425 0.0006 5 8 4.1534 0.3922 0.0015 6 7 4.2209 2.6097 0.0002 7 6 3.6146 3.9491 -0.0003 8 6 4.7679 4.9741 -0.0273 9 6 5.9509 4.1528 -0.6125 10 1 5.9015 4.1175 -1.7009 11 6 7.2956 4.7129 -0.1447 12 6 7.5769 6.0329 -0.8654 13 7 8.8647 6.5688 -0.4178 14 6 9.3218 7.7328 -0.9208 15 8 8.6670 8.3361 -1.7442 16 6 10.6463 8.2843 -0.4600 17 16 10.9791 9.8458 -1.3126 18 6 12.5399 10.2546 -0.6044 19 1 12.9899 9.5985 0.1261 20 6 13.1916 11.4192 -0.9861 21 7 12.6434 12.2185 -1.8767 22 14 14.8465 11.8521 -0.2357 23 1 15.2425 10.7975 0.7318 24 1 15.8676 11.9464 -1.3099 25 1 14.7454 13.1564 0.4670 26 6 5.6879 2.7548 0.0013 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 1.6766 1.9564 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 2.9885 4.0723 -0.8840 35 1 3.0156 4.0852 0.9001 36 1 4.5226 5.8137 -0.6777 37 1 4.9979 5.3224 0.9796 38 1 7.2626 4.8861 0.9309 39 1 8.0862 3.9983 -0.3735 40 1 7.6099 5.8596 -1.9410 41 1 6.7863 6.7474 -0.6365 42 1 9.3883 6.0864 0.2411 43 1 10.6135 8.4572 0.6158 44 1 11.4370 7.5699 -0.6892 45 1 13.0986 13.0324 -2.1431 46 1 6.0729 2.7091 1.0200 47 1 6.1463 1.9790 -0.6119 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001059035277.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:01 Heat of formation + Delta-G solvation = -123.672704 kcal Electronic energy + Delta-G solvation = -24316.275021 eV Core-core repulsion = 20623.095828 eV Total energy + Delta-G solvation = -3693.179193 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.19406 -40.55698 -38.92819 -36.35821 -35.32086 -34.57921 -33.93480 -31.48727 -30.46788 -29.59045 -27.98717 -27.57660 -24.56009 -23.71106 -22.45687 -21.89960 -21.10990 -20.13745 -19.78728 -18.14360 -17.83545 -17.32664 -17.18348 -16.87492 -16.81881 -16.56992 -16.00799 -15.81406 -15.48359 -14.96993 -14.69073 -14.52175 -14.41991 -14.26784 -13.91453 -13.66859 -13.61946 -13.31118 -13.15081 -13.03750 -12.90729 -12.87191 -12.67009 -12.59605 -12.43151 -12.14947 -11.97208 -11.69854 -11.67699 -11.59886 -11.52348 -11.15217 -10.97603 -10.87900 -10.26082 -10.07288 -9.68461 -8.65582 -8.34264 -6.11973 1.28509 1.41881 1.48350 1.58324 1.59625 1.64135 1.96738 2.27266 2.35350 3.00204 3.32751 3.34862 3.62389 3.72516 3.82445 3.97859 3.99499 4.07679 4.22493 4.27653 4.32001 4.34315 4.40149 4.51183 4.53185 4.54652 4.66779 4.69109 4.71721 4.74167 4.84146 4.87059 4.91780 5.04220 5.12311 5.21363 5.22099 5.25716 5.28743 5.39657 5.42981 5.45295 5.49159 6.20770 6.48890 6.54376 7.07494 7.11444 7.27991 8.75254 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.053597 B = 0.001471 C = 0.001448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.287866 B =19024.498983 C =19329.230877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.110 4.110 3 C -0.128 4.128 4 C 0.516 3.484 5 O -0.593 6.593 6 N -0.623 5.623 7 C 0.097 3.903 8 C -0.129 4.129 9 C -0.089 4.089 10 H 0.086 0.914 11 C -0.107 4.107 12 C 0.121 3.879 13 N -0.714 5.714 14 C 0.532 3.468 15 O -0.567 6.567 16 C -0.131 4.131 17 S -0.153 6.153 18 C -0.546 4.546 19 H 0.083 0.917 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 0.998 3.002 23 H -0.257 1.257 24 H -0.275 1.275 25 H -0.274 1.274 26 C 0.107 3.893 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.417 0.583 43 H 0.111 0.889 44 H 0.109 0.891 45 H 0.271 0.729 46 H 0.073 0.927 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.282 -22.089 8.175 32.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.148 4.148 3 C -0.168 4.168 4 C 0.307 3.693 5 O -0.474 6.474 6 N -0.356 5.356 7 C -0.025 4.025 8 C -0.166 4.166 9 C -0.109 4.109 10 H 0.104 0.896 11 C -0.145 4.145 12 C -0.002 4.002 13 N -0.368 5.368 14 C 0.318 3.682 15 O -0.445 6.445 16 C -0.282 4.282 17 S 0.074 5.926 18 C -0.694 4.694 19 H 0.101 0.899 20 C -0.190 4.190 21 N -0.548 5.548 22 Si 0.820 3.180 23 H -0.180 1.180 24 H -0.200 1.200 25 H -0.199 1.199 26 C -0.015 4.015 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.133 0.867 33 H 0.131 0.869 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.111 0.889 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.101 0.899 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.254 0.746 43 H 0.129 0.871 44 H 0.127 0.873 45 H 0.080 0.920 46 H 0.092 0.908 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -23.123 -21.583 6.724 32.337 hybrid contribution 2.085 -0.422 1.196 2.440 sum -21.038 -22.005 7.920 31.457 Atomic orbital electron populations 1.21756 0.93581 1.02390 1.02770 1.21265 0.96797 0.94869 1.01909 1.21741 0.88638 1.00104 1.06281 1.21169 0.91620 0.81654 0.74833 1.90690 1.71767 1.32427 1.52561 1.48694 1.07699 1.06662 1.72545 1.22287 0.96751 0.79940 1.03523 1.22854 0.93265 0.97434 1.03080 1.22243 0.94657 0.93211 1.00813 0.89589 1.21610 0.96936 0.94639 1.01287 1.21392 0.84374 0.95587 0.98861 1.45768 1.22987 1.22492 1.45546 1.20046 0.86430 0.81086 0.80643 1.90689 1.59391 1.60122 1.34338 1.23387 0.97928 1.01736 1.05157 1.85566 1.26737 1.22555 1.57702 1.23246 1.05738 1.11221 1.29180 0.89920 1.26106 1.02775 0.94936 0.95219 1.70184 1.40340 1.12952 1.31324 0.84918 0.76429 0.78474 0.78202 1.18024 1.20011 1.19917 1.22253 0.80800 0.97295 1.01185 0.91595 0.91709 0.92411 0.93069 0.92924 0.86714 0.86909 0.89804 0.89341 0.88912 0.89336 0.89152 0.89900 0.92776 0.91746 0.74628 0.87127 0.87310 0.92001 0.90840 0.92081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 71.98 0.71 -0.36 16 2 C -0.11 -1.35 5.22 30.59 0.16 -1.19 16 3 C -0.13 -1.25 4.89 29.85 0.15 -1.10 16 4 C 0.52 9.18 7.85 87.66 0.69 9.87 16 5 O -0.59 -16.19 16.24 -3.05 -0.05 -16.24 16 6 N -0.62 -8.56 3.33 -811.77 -2.70 -11.26 16 7 C 0.10 0.69 6.49 86.73 0.56 1.25 16 8 C -0.13 -0.98 5.93 31.88 0.19 -0.79 16 9 C -0.09 -0.92 3.02 -9.29 -0.03 -0.95 16 10 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 11 C -0.11 -1.11 4.84 30.59 0.15 -0.96 16 12 C 0.12 2.23 5.58 86.38 0.48 2.71 16 13 N -0.71 -16.10 5.56 -463.07 -2.57 -18.67 16 14 C 0.53 18.78 7.85 87.66 0.69 19.47 16 15 O -0.57 -25.52 15.86 -3.02 -0.05 -25.57 16 16 C -0.13 -5.03 6.16 71.24 0.44 -4.59 16 17 S -0.15 -8.39 20.57 -56.49 -1.16 -9.55 16 18 C -0.55 -30.91 9.50 67.96 0.65 -30.27 16 19 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 20 C 0.01 0.81 5.49 84.86 0.47 1.28 16 21 N -0.91 -55.66 13.22 21.65 0.29 -55.38 16 22 Si 1.00 43.23 29.55 68.60 2.03 45.26 16 23 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 24 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 25 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 26 C 0.11 1.47 6.37 86.86 0.55 2.02 16 27 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.06 0.37 8.14 -2.38 -0.02 0.35 16 29 H 0.06 0.43 8.14 -2.38 -0.02 0.41 16 30 H 0.05 0.80 8.10 -2.39 -0.02 0.78 16 31 H 0.05 0.80 8.10 -2.38 -0.02 0.78 16 32 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 36 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.09 0.59 7.93 -2.39 -0.02 0.57 16 38 H 0.09 0.73 7.98 -2.39 -0.02 0.71 16 39 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.06 1.27 7.76 -2.39 -0.02 1.25 16 42 H 0.42 6.45 8.47 -92.71 -0.79 5.66 16 43 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 44 H 0.11 3.76 8.14 -2.40 -0.02 3.74 16 45 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 46 H 0.07 0.95 8.04 -2.39 -0.02 0.93 16 47 H 0.06 1.06 8.03 -2.39 -0.02 1.04 16 Total: -1.00 -83.43 401.12 1.79 -81.64 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 0.16 Total: 13.38 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: 5.85 Total: -3.61 kcal Atomic # 7 Polarization: -80.32 SS G_CDS: -4.99 Total: -85.31 kcal Atomic # 8 Polarization: -41.71 SS G_CDS: -0.10 Total: -41.81 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: -8.39 SS G_CDS: -1.16 Total: -9.55 kcal Total: -83.43 1.79 -81.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001059035277.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.032 kcal (2) G-P(sol) polarization free energy of solvation -83.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds