Wall clock time and date at job start Tue Mar 31 2020 15:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47012 * 2 1 4 4 C 1.50700 * 109.47144 * 119.99711 * 2 1 3 5 5 O 1.21282 * 120.00179 * 274.83898 * 4 2 1 6 6 N 1.34773 * 119.99683 * 94.83347 * 4 2 1 7 7 C 1.47021 * 125.65095 * 5.11035 * 6 4 2 8 8 C 1.54327 * 107.27370 * 181.02364 * 7 6 4 9 9 C 1.55159 * 102.94008 * 22.19636 * 8 7 6 10 10 H 1.08996 * 111.00429 * 82.57580 * 9 8 7 11 11 C 1.53002 * 110.99956 * 206.42466 * 9 8 7 12 12 C 1.52999 * 109.47453 * 293.54325 * 11 9 8 13 13 N 1.46494 * 109.47426 * 180.02562 * 12 11 9 14 14 C 1.34774 * 120.00198 * 180.02562 * 13 12 11 15 15 O 1.21280 * 119.99792 * 359.97438 * 14 13 12 16 16 C 1.50702 * 120.00349 * 179.97438 * 14 13 12 17 17 S 1.81001 * 109.47214 * 179.97438 * 16 14 13 18 18 C 1.76196 * 99.99760 * 179.97438 * 17 16 14 19 19 H 1.08004 * 120.00180 * 359.97438 * 18 17 16 20 20 C 1.38795 * 120.00068 * 180.02562 * 18 17 16 21 21 N 1.31629 * 120.00145 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00197 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47247 * 89.99865 * 22 20 18 24 24 H 1.48506 * 109.47155 * 209.99715 * 22 20 18 25 25 H 1.48499 * 109.47041 * 329.99756 * 22 20 18 26 26 C 1.47428 * 125.64622 * 184.80632 * 6 4 2 27 27 H 1.09001 * 109.47093 * 55.03442 * 1 2 3 28 28 H 1.09001 * 109.47330 * 175.04049 * 1 2 3 29 29 H 1.09003 * 109.47110 * 295.03975 * 1 2 3 30 30 H 1.08998 * 109.47172 * 240.00096 * 2 1 3 31 31 H 1.08998 * 109.47073 * 60.00036 * 3 2 1 32 32 H 1.08998 * 109.46879 * 179.97438 * 3 2 1 33 33 H 1.09005 * 109.47193 * 299.99784 * 3 2 1 34 34 H 1.09001 * 109.88637 * 300.44567 * 7 6 4 35 35 H 1.08999 * 109.87991 * 61.45334 * 7 6 4 36 36 H 1.08997 * 110.71956 * 140.55574 * 8 7 6 37 37 H 1.08997 * 110.71999 * 263.65718 * 8 7 6 38 38 H 1.09000 * 109.47521 * 53.55195 * 11 9 8 39 39 H 1.09007 * 109.46708 * 173.54586 * 11 9 8 40 40 H 1.09007 * 109.46885 * 300.00595 * 12 11 9 41 41 H 1.09004 * 109.46573 * 60.00046 * 12 11 9 42 42 H 0.97003 * 120.00065 * 359.97438 * 13 12 11 43 43 H 1.09004 * 109.46773 * 299.99972 * 16 14 13 44 44 H 1.08997 * 109.46887 * 59.99512 * 16 14 13 45 45 H 0.97002 * 120.00563 * 180.02562 * 21 20 18 46 46 H 1.08999 * 110.36806 * 274.74110 * 26 6 4 47 47 H 1.08994 * 110.37017 * 37.07275 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.1510 -0.1046 2.2745 6 7 2.3497 -2.0188 1.1708 7 6 2.3552 -2.8446 -0.0456 8 6 2.7547 -4.2751 0.3735 9 6 2.4018 -4.3060 1.8841 10 1 1.3424 -4.5141 2.0337 11 6 3.2688 -5.3230 2.6291 12 6 2.9205 -6.7351 2.1542 13 7 3.7502 -7.7089 2.8679 14 6 3.6168 -9.0251 2.6105 15 8 2.8094 -9.4033 1.7883 16 6 4.4707 -10.0268 3.3443 17 16 4.0585 -11.6973 2.7825 18 6 5.1720 -12.6368 3.7736 19 1 5.8340 -12.1360 4.4646 20 6 5.1991 -14.0202 3.6655 21 7 4.3926 -14.6306 2.8231 22 14 6.3790 -15.0163 4.7168 23 1 5.7178 -15.3775 5.9965 24 1 6.7638 -16.2540 3.9918 25 1 7.5936 -14.2094 4.9977 26 6 2.7549 -2.8576 2.3135 27 1 -0.3633 0.5889 -0.8422 28 1 -0.3634 -1.0238 -0.0888 29 1 -0.3633 0.4350 0.9311 30 1 1.8934 -0.5138 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.3610 -2.8532 -0.4924 35 1 3.0784 -2.4492 -0.7587 36 1 2.1705 -5.0147 -0.1741 37 1 3.8215 -4.4381 0.2205 38 1 4.3207 -5.1208 2.4273 39 1 3.0826 -5.2436 3.7002 40 1 1.8686 -6.9372 2.3561 41 1 3.1067 -6.8143 1.0831 42 1 4.3962 -7.4063 3.5252 43 1 5.5226 -9.8244 3.1426 44 1 4.2843 -9.9477 4.4153 45 1 4.4113 -15.5975 2.7478 46 1 3.8259 -2.7631 2.4925 47 1 2.1942 -2.5797 3.2058 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001059176125.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:13 Heat of formation + Delta-G solvation = -95.654479 kcal Electronic energy + Delta-G solvation = -24631.463046 eV Core-core repulsion = 20939.498814 eV Total energy + Delta-G solvation = -3691.964231 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.68329 -39.25242 -38.28627 -35.34938 -34.86164 -32.95731 -32.43828 -30.40733 -29.61393 -27.92685 -27.63247 -25.51234 -24.65030 -23.16599 -22.37197 -20.89455 -20.17066 -19.23287 -17.86680 -17.77053 -16.79999 -16.17396 -16.02612 -15.85410 -15.59266 -14.92833 -14.81398 -14.74477 -14.29389 -14.04903 -13.82498 -13.63360 -13.43310 -13.15514 -13.08678 -12.81274 -12.61152 -12.55305 -12.46003 -12.37635 -12.07177 -11.74621 -11.64918 -11.50774 -11.38648 -11.13468 -11.07215 -11.03513 -10.97785 -10.76761 -10.10611 -9.82635 -9.42672 -9.08331 -9.07959 -8.90803 -8.25005 -6.51256 -6.22711 -3.93402 2.22779 2.51948 3.02598 3.08244 3.21667 3.27341 3.31407 3.68130 3.85609 4.09120 4.19485 4.20440 4.33912 4.38133 4.53906 4.67920 4.79828 4.83220 4.89941 4.95288 5.06539 5.12551 5.13495 5.18850 5.19734 5.25099 5.31587 5.33931 5.36644 5.40531 5.44818 5.53637 5.60364 5.66025 5.70369 5.74754 5.84039 5.88904 5.90407 5.94650 6.12751 6.59353 7.07491 7.58541 7.68428 7.76364 8.34153 8.59433 9.22684 10.84713 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.047856 B = 0.001553 C = 0.001527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.948354 B =18020.078454 C =18337.378913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.111 4.111 3 C -0.137 4.137 4 C 0.532 3.468 5 O -0.540 6.540 6 N -0.621 5.621 7 C 0.099 3.901 8 C -0.131 4.131 9 C -0.096 4.096 10 H 0.091 0.909 11 C -0.120 4.120 12 C 0.122 3.878 13 N -0.740 5.740 14 C 0.531 3.469 15 O -0.518 6.518 16 C -0.154 4.154 17 S -0.061 6.061 18 C -0.536 4.536 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.110 3.890 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.398 0.602 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.268 0.732 46 H 0.070 0.930 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.192 29.748 -5.946 30.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.132 4.132 3 C -0.195 4.195 4 C 0.321 3.679 5 O -0.417 6.417 6 N -0.355 5.355 7 C -0.024 4.024 8 C -0.169 4.169 9 C -0.116 4.116 10 H 0.109 0.891 11 C -0.159 4.159 12 C -0.002 4.002 13 N -0.395 5.395 14 C 0.317 3.683 15 O -0.393 6.393 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 C -0.012 4.012 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.232 0.768 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.078 0.922 46 H 0.088 0.912 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.572 29.363 -6.852 30.662 hybrid contribution 2.045 -0.172 1.861 2.770 sum -3.527 29.191 -4.991 29.823 Atomic orbital electron populations 1.21716 0.92337 1.02564 1.03152 1.21273 0.98012 0.97802 0.96121 1.21688 1.01249 0.93712 1.02822 1.20441 0.76719 0.80098 0.90605 1.90705 1.53651 1.65042 1.32268 1.48567 1.67881 1.09061 1.10008 1.22105 1.01713 0.91123 0.87444 1.22785 1.02939 0.95264 0.95898 1.22340 1.00994 0.93340 0.94915 0.89093 1.21717 1.00169 0.93243 1.00740 1.21244 0.95495 0.86510 0.96970 1.46003 1.42631 1.06187 1.44691 1.20309 0.83267 0.82217 0.82468 1.90700 1.35936 1.79108 1.33508 1.23535 1.01894 1.01946 1.03073 1.85388 1.52747 0.90434 1.54852 1.22871 1.24702 0.93925 1.26939 0.90921 1.24988 0.96124 0.96779 0.95651 1.70015 1.36210 1.09783 1.34281 0.86170 0.80397 0.79144 0.79792 1.20262 1.20741 1.19704 1.22319 1.00353 0.88747 0.89816 0.91167 0.92182 0.91788 0.89331 0.91319 0.92461 0.91669 0.91119 0.91195 0.89263 0.89983 0.90750 0.90640 0.91640 0.91486 0.76820 0.89227 0.89225 0.92176 0.91173 0.90325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.74 9.18 37.16 0.34 -0.40 16 2 C -0.11 -0.69 2.96 -91.77 -0.27 -0.97 16 3 C -0.14 -0.84 8.85 37.16 0.33 -0.51 16 4 C 0.53 5.04 6.84 -10.99 -0.08 4.96 16 5 O -0.54 -7.22 16.57 5.56 0.09 -7.12 16 6 N -0.62 -4.83 3.32 -170.38 -0.57 -5.40 16 7 C 0.10 0.51 5.95 -3.06 -0.02 0.50 16 8 C -0.13 -0.69 5.59 -24.89 -0.14 -0.83 16 9 C -0.10 -0.58 3.09 -88.35 -0.27 -0.86 16 10 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 11 C -0.12 -0.78 4.84 -26.73 -0.13 -0.91 16 12 C 0.12 1.23 5.52 -4.05 -0.02 1.21 16 13 N -0.74 -9.17 5.56 -60.29 -0.33 -9.50 16 14 C 0.53 9.62 7.85 -10.99 -0.09 9.53 16 15 O -0.52 -11.53 15.86 5.56 0.09 -11.44 16 16 C -0.15 -3.04 6.16 36.01 0.22 -2.82 16 17 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 18 C -0.54 -15.19 9.50 30.94 0.29 -14.89 16 19 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.03 13.22 55.49 0.73 -25.29 16 22 Si 0.92 21.27 29.55 -169.99 -5.02 16.25 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 C 0.11 0.82 6.36 -2.40 -0.02 0.80 16 27 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.40 6.99 -51.93 -0.36 0.04 16 31 H 0.07 0.52 7.86 -51.93 -0.41 0.11 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.30 7.99 -51.93 -0.42 -0.12 16 36 H 0.09 0.45 8.13 -51.93 -0.42 0.03 16 37 H 0.08 0.43 8.02 -51.93 -0.42 0.01 16 38 H 0.07 0.44 8.11 -51.93 -0.42 0.02 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.07 0.72 7.51 -51.93 -0.39 0.33 16 42 H 0.40 3.74 8.47 -40.82 -0.35 3.40 16 43 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 44 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 45 H 0.27 7.47 8.31 -40.82 -0.34 7.14 16 46 H 0.07 0.52 8.04 -51.93 -0.42 0.10 16 47 H 0.08 0.67 8.09 -51.93 -0.42 0.25 16 LS Contribution 399.04 15.07 6.01 6.01 Total: -1.00 -36.66 399.04 -9.36 -46.03 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -8.21 Total: -2.48 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: 0.06 Total: -3.20 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: -0.17 Total: -40.19 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: 0.18 Total: -18.57 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.66 -9.36 -46.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001059176125.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.628 kcal (2) G-P(sol) polarization free energy of solvation -36.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds