Wall clock time and date at job start Tue Mar 31 2020 15:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47012 * 2 1 4 4 C 1.50700 * 109.47144 * 119.99711 * 2 1 3 5 5 O 1.21282 * 120.00179 * 274.83898 * 4 2 1 6 6 N 1.34773 * 119.99683 * 94.83347 * 4 2 1 7 7 C 1.47021 * 125.65095 * 5.11035 * 6 4 2 8 8 C 1.54327 * 107.27370 * 181.02364 * 7 6 4 9 9 C 1.55159 * 102.94008 * 22.19636 * 8 7 6 10 10 H 1.08996 * 111.00429 * 82.57580 * 9 8 7 11 11 C 1.53002 * 110.99956 * 206.42466 * 9 8 7 12 12 C 1.52999 * 109.47453 * 293.54325 * 11 9 8 13 13 N 1.46494 * 109.47426 * 180.02562 * 12 11 9 14 14 C 1.34774 * 120.00198 * 180.02562 * 13 12 11 15 15 O 1.21280 * 119.99792 * 359.97438 * 14 13 12 16 16 C 1.50702 * 120.00349 * 179.97438 * 14 13 12 17 17 S 1.81001 * 109.47214 * 179.97438 * 16 14 13 18 18 C 1.76196 * 99.99760 * 179.97438 * 17 16 14 19 19 H 1.08004 * 120.00180 * 359.97438 * 18 17 16 20 20 C 1.38795 * 120.00068 * 180.02562 * 18 17 16 21 21 N 1.31629 * 120.00145 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00197 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47247 * 89.99865 * 22 20 18 24 24 H 1.48506 * 109.47155 * 209.99715 * 22 20 18 25 25 H 1.48499 * 109.47041 * 329.99756 * 22 20 18 26 26 C 1.47428 * 125.64622 * 184.80632 * 6 4 2 27 27 H 1.09001 * 109.47093 * 55.03442 * 1 2 3 28 28 H 1.09001 * 109.47330 * 175.04049 * 1 2 3 29 29 H 1.09003 * 109.47110 * 295.03975 * 1 2 3 30 30 H 1.08998 * 109.47172 * 240.00096 * 2 1 3 31 31 H 1.08998 * 109.47073 * 60.00036 * 3 2 1 32 32 H 1.08998 * 109.46879 * 179.97438 * 3 2 1 33 33 H 1.09005 * 109.47193 * 299.99784 * 3 2 1 34 34 H 1.09001 * 109.88637 * 300.44567 * 7 6 4 35 35 H 1.08999 * 109.87991 * 61.45334 * 7 6 4 36 36 H 1.08997 * 110.71956 * 140.55574 * 8 7 6 37 37 H 1.08997 * 110.71999 * 263.65718 * 8 7 6 38 38 H 1.09000 * 109.47521 * 53.55195 * 11 9 8 39 39 H 1.09007 * 109.46708 * 173.54586 * 11 9 8 40 40 H 1.09007 * 109.46885 * 300.00595 * 12 11 9 41 41 H 1.09004 * 109.46573 * 60.00046 * 12 11 9 42 42 H 0.97003 * 120.00065 * 359.97438 * 13 12 11 43 43 H 1.09004 * 109.46773 * 299.99972 * 16 14 13 44 44 H 1.08997 * 109.46887 * 59.99512 * 16 14 13 45 45 H 0.97002 * 120.00563 * 180.02562 * 21 20 18 46 46 H 1.08999 * 110.36806 * 274.74110 * 26 6 4 47 47 H 1.08994 * 110.37017 * 37.07275 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.1510 -0.1046 2.2745 6 7 2.3497 -2.0188 1.1708 7 6 2.3552 -2.8446 -0.0456 8 6 2.7547 -4.2751 0.3735 9 6 2.4018 -4.3060 1.8841 10 1 1.3424 -4.5141 2.0337 11 6 3.2688 -5.3230 2.6291 12 6 2.9205 -6.7351 2.1542 13 7 3.7502 -7.7089 2.8679 14 6 3.6168 -9.0251 2.6105 15 8 2.8094 -9.4033 1.7883 16 6 4.4707 -10.0268 3.3443 17 16 4.0585 -11.6973 2.7825 18 6 5.1720 -12.6368 3.7736 19 1 5.8340 -12.1360 4.4646 20 6 5.1991 -14.0202 3.6655 21 7 4.3926 -14.6306 2.8231 22 14 6.3790 -15.0163 4.7168 23 1 5.7178 -15.3775 5.9965 24 1 6.7638 -16.2540 3.9918 25 1 7.5936 -14.2094 4.9977 26 6 2.7549 -2.8576 2.3135 27 1 -0.3633 0.5889 -0.8422 28 1 -0.3634 -1.0238 -0.0888 29 1 -0.3633 0.4350 0.9311 30 1 1.8934 -0.5138 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.3610 -2.8532 -0.4924 35 1 3.0784 -2.4492 -0.7587 36 1 2.1705 -5.0147 -0.1741 37 1 3.8215 -4.4381 0.2205 38 1 4.3207 -5.1208 2.4273 39 1 3.0826 -5.2436 3.7002 40 1 1.8686 -6.9372 2.3561 41 1 3.1067 -6.8143 1.0831 42 1 4.3962 -7.4063 3.5252 43 1 5.5226 -9.8244 3.1426 44 1 4.2843 -9.9477 4.4153 45 1 4.4113 -15.5975 2.7478 46 1 3.8259 -2.7631 2.4925 47 1 2.1942 -2.5797 3.2058 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001059176125.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:12 Heat of formation + Delta-G solvation = -120.805220 kcal Electronic energy + Delta-G solvation = -24632.553664 eV Core-core repulsion = 20939.498814 eV Total energy + Delta-G solvation = -3693.054849 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.31979 -40.56835 -38.99191 -36.35692 -35.44261 -34.57752 -33.84085 -31.40183 -30.47077 -28.84986 -28.09999 -27.63702 -25.34933 -23.79615 -22.95679 -21.87106 -21.10749 -19.88658 -19.72242 -18.38436 -17.81563 -17.32689 -17.07156 -16.86859 -16.72814 -16.51794 -15.83363 -15.70565 -15.34344 -14.99481 -14.70754 -14.50917 -14.43809 -14.15932 -13.92264 -13.71001 -13.55655 -13.34437 -13.15661 -13.11148 -13.04812 -12.89294 -12.86735 -12.60812 -12.43396 -12.14408 -12.11439 -11.91215 -11.71226 -11.63523 -11.52439 -11.13579 -10.94470 -10.79567 -10.26500 -10.06931 -9.70089 -8.65513 -8.33931 -6.11837 1.28467 1.43098 1.48283 1.54353 1.58764 1.64331 1.94678 2.27561 2.35374 3.00321 3.30918 3.33747 3.60617 3.64869 3.81346 3.91964 3.99848 4.06845 4.21897 4.26800 4.30387 4.33907 4.37796 4.44153 4.51519 4.53582 4.67985 4.71699 4.72441 4.79131 4.83212 4.86787 4.90864 4.96516 5.05535 5.11246 5.20759 5.23280 5.24742 5.32909 5.40306 5.42709 5.49386 6.20570 6.46712 6.54498 7.07568 7.09173 7.28133 8.75240 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.047856 B = 0.001553 C = 0.001527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.948354 B =18020.078454 C =18337.378913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.107 4.107 3 C -0.136 4.136 4 C 0.523 3.477 5 O -0.591 6.591 6 N -0.621 5.621 7 C 0.096 3.904 8 C -0.129 4.129 9 C -0.088 4.088 10 H 0.089 0.911 11 C -0.107 4.107 12 C 0.121 3.879 13 N -0.714 5.714 14 C 0.532 3.468 15 O -0.567 6.567 16 C -0.131 4.131 17 S -0.152 6.152 18 C -0.548 4.548 19 H 0.083 0.917 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 0.998 3.002 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.258 1.258 26 C 0.108 3.892 27 H 0.090 0.910 28 H 0.064 0.936 29 H 0.044 0.956 30 H 0.113 0.887 31 H 0.047 0.953 32 H 0.051 0.949 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.055 0.945 41 H 0.065 0.935 42 H 0.417 0.583 43 H 0.110 0.890 44 H 0.109 0.891 45 H 0.271 0.729 46 H 0.072 0.928 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.920 30.774 -5.958 31.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 C -0.194 4.194 4 C 0.313 3.687 5 O -0.471 6.471 6 N -0.354 5.354 7 C -0.026 4.026 8 C -0.167 4.167 9 C -0.108 4.108 10 H 0.107 0.893 11 C -0.145 4.145 12 C -0.002 4.002 13 N -0.368 5.368 14 C 0.318 3.682 15 O -0.445 6.445 16 C -0.282 4.282 17 S 0.075 5.925 18 C -0.695 4.695 19 H 0.101 0.899 20 C -0.191 4.191 21 N -0.547 5.547 22 Si 0.820 3.180 23 H -0.194 1.194 24 H -0.203 1.203 25 H -0.182 1.182 26 C -0.015 4.015 27 H 0.109 0.891 28 H 0.084 0.916 29 H 0.063 0.937 30 H 0.131 0.869 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.102 0.898 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.254 0.746 43 H 0.128 0.872 44 H 0.127 0.873 45 H 0.080 0.920 46 H 0.091 0.909 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.279 30.425 -6.860 31.481 hybrid contribution 1.627 -0.366 1.858 2.497 sum -2.652 30.058 -5.002 30.587 Atomic orbital electron populations 1.21716 0.91577 1.03142 1.03044 1.21347 0.98530 0.97586 0.95355 1.21691 1.00903 0.93838 1.02939 1.21091 0.76133 0.80481 0.90961 1.90674 1.55945 1.66254 1.34243 1.48701 1.66789 1.08898 1.11045 1.22296 1.03095 0.90575 0.86617 1.22801 1.03360 0.95450 0.95059 1.22232 1.00789 0.92181 0.95558 0.89302 1.21614 1.01008 0.90740 1.01169 1.21397 0.94542 0.87556 0.96742 1.45766 1.42364 1.04455 1.44202 1.20037 0.82549 0.83722 0.81877 1.90689 1.37975 1.80172 1.35706 1.23387 1.03323 0.97460 1.04036 1.85557 1.54025 0.96480 1.56450 1.23216 1.24735 0.94589 1.26990 0.89919 1.26109 0.97937 0.98083 0.96924 1.70179 1.38189 1.10188 1.36188 0.84964 0.78080 0.77257 0.77734 1.19372 1.20304 1.18207 1.22318 1.00236 0.89467 0.89488 0.89096 0.91649 0.93665 0.86887 0.93388 0.93014 0.89295 0.89720 0.89634 0.88809 0.89492 0.89336 0.89808 0.92652 0.91706 0.74645 0.87178 0.87302 0.91999 0.90947 0.91910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.18 71.98 0.66 -0.60 16 2 C -0.11 -1.19 2.96 -11.54 -0.03 -1.22 16 3 C -0.14 -1.56 8.85 71.98 0.64 -0.92 16 4 C 0.52 9.70 6.84 87.66 0.60 10.30 16 5 O -0.59 -16.37 16.57 -3.04 -0.05 -16.42 16 6 N -0.62 -8.92 3.32 -811.34 -2.70 -11.62 16 7 C 0.10 0.76 5.95 86.73 0.52 1.27 16 8 C -0.13 -1.05 5.59 31.78 0.18 -0.87 16 9 C -0.09 -0.90 3.09 -9.32 -0.03 -0.93 16 10 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 11 C -0.11 -1.12 4.84 30.59 0.15 -0.97 16 12 C 0.12 2.20 5.52 86.38 0.48 2.68 16 13 N -0.71 -16.04 5.56 -463.06 -2.57 -18.61 16 14 C 0.53 18.73 7.85 87.66 0.69 19.42 16 15 O -0.57 -25.44 15.86 -3.03 -0.05 -25.49 16 16 C -0.13 -5.02 6.16 71.24 0.44 -4.58 16 17 S -0.15 -8.36 20.57 -56.49 -1.16 -9.52 16 18 C -0.55 -31.00 9.50 67.95 0.65 -30.36 16 19 H 0.08 4.34 7.80 -2.91 -0.02 4.31 16 20 C 0.01 0.81 5.49 84.86 0.47 1.27 16 21 N -0.91 -55.61 13.22 21.65 0.29 -55.32 16 22 Si 1.00 43.20 29.55 68.60 2.03 45.23 16 23 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 24 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 25 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 26 C 0.11 1.49 6.36 86.93 0.55 2.04 16 27 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.11 0.70 6.99 -2.39 -0.02 0.68 16 31 H 0.05 0.75 7.86 -2.39 -0.02 0.73 16 32 H 0.05 0.63 8.14 -2.39 -0.02 0.62 16 33 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 34 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.09 0.46 7.99 -2.39 -0.02 0.44 16 36 H 0.09 0.73 8.13 -2.39 -0.02 0.71 16 37 H 0.09 0.66 8.02 -2.39 -0.02 0.64 16 38 H 0.09 0.74 8.11 -2.39 -0.02 0.72 16 39 H 0.08 0.79 8.14 -2.38 -0.02 0.78 16 40 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 41 H 0.06 1.27 7.51 -2.38 -0.02 1.25 16 42 H 0.42 6.44 8.47 -92.71 -0.79 5.65 16 43 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 44 H 0.11 3.76 8.14 -2.40 -0.02 3.74 16 45 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 46 H 0.07 0.97 8.04 -2.39 -0.02 0.95 16 47 H 0.06 1.07 8.09 -2.39 -0.02 1.05 16 Total: -1.00 -83.14 399.04 1.89 -81.26 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 0.16 Total: 13.97 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: 5.94 Total: -3.48 kcal Atomic # 7 Polarization: -80.56 SS G_CDS: -4.98 Total: -85.55 kcal Atomic # 8 Polarization: -41.81 SS G_CDS: -0.10 Total: -41.91 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 16 Polarization: -8.36 SS G_CDS: -1.16 Total: -9.52 kcal Total: -83.14 1.89 -81.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001059176125.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.549 kcal (2) G-P(sol) polarization free energy of solvation -83.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds