Wall clock time and date at job start Tue Mar 31 2020 15:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47047 * 2 1 4 4 C 1.50697 * 109.46752 * 120.00026 * 2 1 3 5 5 O 1.21284 * 119.99694 * 240.00048 * 4 2 1 6 6 N 1.34778 * 120.00689 * 59.99777 * 4 2 1 7 7 C 1.46493 * 120.00290 * 180.02562 * 6 4 2 8 8 C 1.52999 * 109.47282 * 180.02562 * 7 6 4 9 9 C 1.52996 * 109.47288 * 179.97438 * 8 7 6 10 10 H 1.08994 * 110.91725 * 302.54803 * 9 8 7 11 11 C 1.55164 * 111.00141 * 178.64594 * 9 8 7 12 12 C 1.54330 * 102.94081 * 206.42304 * 11 9 8 13 13 N 1.47026 * 107.26840 * 22.19556 * 12 11 9 14 14 C 1.34775 * 125.64611 * 181.02123 * 13 12 11 15 15 O 1.21283 * 120.00103 * 180.02562 * 14 13 12 16 16 C 1.50704 * 119.99927 * 0.02745 * 14 13 12 17 17 S 1.80999 * 109.46954 * 180.02562 * 16 14 13 18 18 C 1.76208 * 100.00025 * 179.97438 * 17 16 14 19 19 H 1.08004 * 119.99802 * 359.97438 * 18 17 16 20 20 C 1.38794 * 119.99924 * 179.97438 * 18 17 16 21 21 N 1.31628 * 120.00470 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99851 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47217 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47289 * 119.99718 * 22 20 18 25 25 H 1.48495 * 109.47032 * 239.99880 * 22 20 18 26 26 C 1.47422 * 108.70500 * 1.05856 * 13 12 11 27 27 H 1.09000 * 109.47484 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47201 * 300.00255 * 1 2 3 29 29 H 1.08999 * 109.46975 * 60.00502 * 1 2 3 30 30 H 1.09003 * 109.47067 * 239.99464 * 2 1 3 31 31 H 1.09003 * 109.47083 * 180.02562 * 3 2 1 32 32 H 1.09009 * 109.46903 * 299.99437 * 3 2 1 33 33 H 1.08994 * 109.47329 * 59.99823 * 3 2 1 34 34 H 0.96999 * 119.99594 * 0.02562 * 6 4 2 35 35 H 1.08994 * 109.47412 * 60.00012 * 7 6 4 36 36 H 1.09004 * 109.47070 * 299.99854 * 7 6 4 37 37 H 1.09003 * 109.47377 * 59.99589 * 8 7 6 38 38 H 1.09004 * 109.46754 * 299.99809 * 8 7 6 39 39 H 1.08999 * 110.71932 * 88.06637 * 11 9 8 40 40 H 1.08995 * 110.72046 * 324.78892 * 11 9 8 41 41 H 1.08998 * 109.88224 * 262.77875 * 12 11 9 42 42 H 1.08998 * 109.88221 * 141.61268 * 12 11 9 43 43 H 1.09002 * 109.46914 * 299.99993 * 16 14 13 44 44 H 1.08991 * 109.47478 * 59.99879 * 16 14 13 45 45 H 0.96999 * 120.00084 * 179.97438 * 21 20 18 46 46 H 1.08996 * 110.36785 * 94.70778 * 26 13 12 47 47 H 1.09004 * 110.36699 * 216.92190 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 2.7295 -0.1210 2.0288 6 7 1.7066 -2.0007 1.4439 7 6 2.1944 -2.6911 2.6403 8 6 1.6851 -4.1338 2.6401 9 6 2.1950 -4.8550 3.8893 10 1 3.2837 -4.8293 3.9363 11 6 1.6704 -6.3143 3.9421 12 6 1.6702 -6.6270 5.4534 13 7 1.6238 -5.3414 6.1651 14 6 1.6291 -5.1840 7.5036 15 8 1.5872 -4.0709 7.9835 16 6 1.6872 -6.3910 8.4041 17 16 1.6795 -5.8550 10.1328 18 6 1.7510 -7.4203 10.9388 19 1 1.7832 -8.3278 10.3541 20 6 1.7659 -7.4870 12.3251 21 7 1.7272 -6.3810 13.0378 22 14 1.8424 -9.1464 13.1795 23 1 1.8778 -10.2265 12.1610 24 1 3.0662 -9.2157 14.0177 25 1 0.6435 -9.3163 14.0390 26 6 1.5694 -4.2530 5.1722 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6766 1.9563 0.8899 34 1 1.1493 -2.4723 0.8052 35 1 1.8307 -2.1772 3.5300 36 1 3.2845 -2.6911 2.6408 37 1 2.0491 -4.6475 1.7503 38 1 0.5950 -4.1342 2.6394 39 1 2.3438 -6.9857 3.4095 40 1 0.6610 -6.3761 3.5354 41 1 2.5792 -7.1659 5.7205 42 1 0.7945 -7.2238 5.7084 43 1 0.8211 -7.0258 8.2170 44 1 2.5994 -6.9520 8.2013 45 1 1.7372 -6.4277 14.0066 46 1 0.5362 -3.9585 4.9883 47 1 2.1517 -3.3975 5.5148 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001059197331.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:07 Heat of formation + Delta-G solvation = -95.229585 kcal Electronic energy + Delta-G solvation = -24875.806656 eV Core-core repulsion = 21183.860849 eV Total energy + Delta-G solvation = -3691.945806 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.31260 -39.81108 -37.63951 -35.65762 -34.88496 -32.97274 -32.42247 -30.26965 -29.57769 -27.72539 -27.27629 -25.50690 -24.66550 -23.35771 -22.18498 -20.88708 -19.99419 -19.32299 -17.71946 -17.53621 -16.67069 -16.53018 -16.22112 -15.90274 -15.36241 -14.81460 -14.78300 -14.47466 -14.35773 -13.91623 -13.89341 -13.56149 -13.40613 -12.99336 -12.81404 -12.76395 -12.59471 -12.51251 -12.39134 -12.31611 -11.84949 -11.74203 -11.63269 -11.53475 -11.35168 -11.06881 -11.01953 -10.96402 -10.95156 -10.74798 -10.04539 -9.79808 -9.42393 -9.38990 -9.06784 -8.49233 -8.21694 -6.49331 -6.20929 -3.91572 2.32760 2.78104 2.93902 3.08063 3.21912 3.26731 3.31641 3.63021 4.08956 4.20903 4.21361 4.34754 4.40377 4.41607 4.49608 4.72986 4.80204 4.91742 5.01528 5.08533 5.11085 5.14206 5.14536 5.20553 5.23695 5.34081 5.40160 5.47141 5.47814 5.52874 5.61673 5.64474 5.66453 5.67995 5.73738 5.83032 5.85316 5.95664 5.99259 6.07134 6.14865 6.44029 7.11538 7.60345 7.68622 7.89802 8.36090 8.57568 9.24295 10.86580 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.028402 B = 0.001821 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.592298 B =15371.506505 C =16051.848496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.115 4.115 3 C -0.134 4.134 4 C 0.513 3.487 5 O -0.535 6.535 6 N -0.732 5.732 7 C 0.113 3.887 8 C -0.117 4.117 9 C -0.099 4.099 10 H 0.090 0.910 11 C -0.124 4.124 12 C 0.101 3.899 13 N -0.627 5.627 14 C 0.547 3.453 15 O -0.515 6.515 16 C -0.146 4.146 17 S -0.062 6.062 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.110 3.890 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.096 0.904 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.399 0.601 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.268 0.732 46 H 0.065 0.935 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.268 4.522 -32.071 32.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.136 4.136 3 C -0.192 4.192 4 C 0.299 3.701 5 O -0.411 6.411 6 N -0.384 5.384 7 C -0.010 4.010 8 C -0.155 4.155 9 C -0.119 4.119 10 H 0.108 0.892 11 C -0.162 4.162 12 C -0.022 4.022 13 N -0.365 5.365 14 C 0.336 3.664 15 O -0.389 6.389 16 C -0.297 4.297 17 S 0.165 5.835 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.013 4.013 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.114 0.886 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.233 0.767 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.101 0.899 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.819 6.695 -30.465 31.245 hybrid contribution -0.183 -2.756 -0.297 2.778 sum -2.002 3.939 -30.762 31.077 Atomic orbital electron populations 1.21799 0.92828 1.02465 1.03159 1.21314 0.97629 0.98203 0.96483 1.21622 1.01851 0.93477 1.02226 1.20752 0.80036 0.81602 0.87738 1.90738 1.37498 1.65931 1.46969 1.46037 1.54247 1.12368 1.25762 1.21452 0.99691 0.91922 0.87938 1.21717 1.01563 0.94144 0.98097 1.22313 1.01125 0.94933 0.93549 0.89201 1.22685 1.02184 0.96042 0.95308 1.21991 1.02170 0.86579 0.91488 1.48498 1.75682 1.07371 1.04949 1.20037 0.75207 0.90997 0.80163 1.90716 1.48104 1.26407 1.73675 1.23503 1.04742 0.98521 1.02912 1.85424 1.96548 1.11815 0.89696 1.22902 1.58735 0.92671 0.93974 0.90885 1.24996 0.94560 0.97711 0.96340 1.70030 1.46895 1.26835 1.06485 0.86111 0.77913 0.82200 0.79232 1.19629 1.20554 1.20566 1.22238 1.00633 0.91286 0.87110 0.92185 0.91882 0.91314 0.88594 0.91927 0.92019 0.91800 0.76662 0.90937 0.91253 0.90665 0.90750 0.89909 0.90402 0.91253 0.91264 0.89342 0.89321 0.92229 0.91707 0.90300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.60 9.09 37.16 0.34 -0.26 16 2 C -0.11 -0.65 3.26 -91.78 -0.30 -0.95 16 3 C -0.13 -0.88 8.48 37.15 0.32 -0.57 16 4 C 0.51 4.62 7.15 -10.99 -0.08 4.54 16 5 O -0.54 -7.41 15.98 5.55 0.09 -7.32 16 6 N -0.73 -4.77 5.45 -60.30 -0.33 -5.10 16 7 C 0.11 0.87 5.52 -4.05 -0.02 0.84 16 8 C -0.12 -0.62 4.84 -26.73 -0.13 -0.75 16 9 C -0.10 -0.76 3.07 -88.47 -0.27 -1.03 16 10 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 11 C -0.12 -0.85 6.42 -24.89 -0.16 -1.01 16 12 C 0.10 1.05 6.49 -3.06 -0.02 1.03 16 13 N -0.63 -9.16 3.33 -170.52 -0.57 -9.73 16 14 C 0.55 10.89 7.87 -10.98 -0.09 10.80 16 15 O -0.52 -12.36 16.12 5.56 0.09 -12.27 16 16 C -0.15 -3.07 5.35 36.01 0.19 -2.87 16 17 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 18 C -0.53 -15.40 9.50 30.94 0.29 -15.11 16 19 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.41 13.22 55.49 0.73 -25.68 16 22 Si 0.92 21.54 29.55 -169.99 -5.02 16.51 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 26 C 0.11 1.30 5.57 -2.53 -0.01 1.29 16 27 H 0.06 0.17 7.56 -51.93 -0.39 -0.22 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 32 H 0.06 0.28 8.14 -51.92 -0.42 -0.14 16 33 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 34 H 0.40 1.36 7.89 -40.82 -0.32 1.03 16 35 H 0.07 0.71 7.46 -51.93 -0.39 0.32 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 38 H 0.07 0.36 8.10 -51.93 -0.42 -0.07 16 39 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.45 8.04 -51.93 -0.42 0.04 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.09 1.72 8.14 -51.91 -0.42 1.30 16 44 H 0.09 1.73 8.14 -51.92 -0.42 1.30 16 45 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 46 H 0.06 0.73 8.00 -51.93 -0.42 0.32 16 47 H 0.08 1.07 7.96 -51.93 -0.41 0.66 16 LS Contribution 398.68 15.07 6.01 6.01 Total: -1.00 -37.88 398.68 -9.48 -47.35 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -8.23 Total: -3.83 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -0.04 Total: -2.04 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: -0.16 Total: -40.50 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: 0.18 Total: -19.59 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -37.88 -9.48 -47.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001059197331.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.875 kcal (2) G-P(sol) polarization free energy of solvation -37.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds