Wall clock time and date at job start Tue Mar 31 2020 15:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47047 * 2 1 4 4 C 1.50697 * 109.46752 * 120.00026 * 2 1 3 5 5 O 1.21284 * 119.99694 * 240.00048 * 4 2 1 6 6 N 1.34778 * 120.00689 * 59.99777 * 4 2 1 7 7 C 1.46493 * 120.00290 * 180.02562 * 6 4 2 8 8 C 1.52999 * 109.47282 * 180.02562 * 7 6 4 9 9 C 1.52996 * 109.47288 * 179.97438 * 8 7 6 10 10 H 1.08994 * 110.91725 * 302.54803 * 9 8 7 11 11 C 1.55164 * 111.00141 * 178.64594 * 9 8 7 12 12 C 1.54330 * 102.94081 * 206.42304 * 11 9 8 13 13 N 1.47026 * 107.26840 * 22.19556 * 12 11 9 14 14 C 1.34775 * 125.64611 * 181.02123 * 13 12 11 15 15 O 1.21283 * 120.00103 * 180.02562 * 14 13 12 16 16 C 1.50704 * 119.99927 * 0.02745 * 14 13 12 17 17 S 1.80999 * 109.46954 * 180.02562 * 16 14 13 18 18 C 1.76208 * 100.00025 * 179.97438 * 17 16 14 19 19 H 1.08004 * 119.99802 * 359.97438 * 18 17 16 20 20 C 1.38794 * 119.99924 * 179.97438 * 18 17 16 21 21 N 1.31628 * 120.00470 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99851 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47217 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47289 * 119.99718 * 22 20 18 25 25 H 1.48495 * 109.47032 * 239.99880 * 22 20 18 26 26 C 1.47422 * 108.70500 * 1.05856 * 13 12 11 27 27 H 1.09000 * 109.47484 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47201 * 300.00255 * 1 2 3 29 29 H 1.08999 * 109.46975 * 60.00502 * 1 2 3 30 30 H 1.09003 * 109.47067 * 239.99464 * 2 1 3 31 31 H 1.09003 * 109.47083 * 180.02562 * 3 2 1 32 32 H 1.09009 * 109.46903 * 299.99437 * 3 2 1 33 33 H 1.08994 * 109.47329 * 59.99823 * 3 2 1 34 34 H 0.96999 * 119.99594 * 0.02562 * 6 4 2 35 35 H 1.08994 * 109.47412 * 60.00012 * 7 6 4 36 36 H 1.09004 * 109.47070 * 299.99854 * 7 6 4 37 37 H 1.09003 * 109.47377 * 59.99589 * 8 7 6 38 38 H 1.09004 * 109.46754 * 299.99809 * 8 7 6 39 39 H 1.08999 * 110.71932 * 88.06637 * 11 9 8 40 40 H 1.08995 * 110.72046 * 324.78892 * 11 9 8 41 41 H 1.08998 * 109.88224 * 262.77875 * 12 11 9 42 42 H 1.08998 * 109.88221 * 141.61268 * 12 11 9 43 43 H 1.09002 * 109.46914 * 299.99993 * 16 14 13 44 44 H 1.08991 * 109.47478 * 59.99879 * 16 14 13 45 45 H 0.96999 * 120.00084 * 179.97438 * 21 20 18 46 46 H 1.08996 * 110.36785 * 94.70778 * 26 13 12 47 47 H 1.09004 * 110.36699 * 216.92190 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 2.7295 -0.1210 2.0288 6 7 1.7066 -2.0007 1.4439 7 6 2.1944 -2.6911 2.6403 8 6 1.6851 -4.1338 2.6401 9 6 2.1950 -4.8550 3.8893 10 1 3.2837 -4.8293 3.9363 11 6 1.6704 -6.3143 3.9421 12 6 1.6702 -6.6270 5.4534 13 7 1.6238 -5.3414 6.1651 14 6 1.6291 -5.1840 7.5036 15 8 1.5872 -4.0709 7.9835 16 6 1.6872 -6.3910 8.4041 17 16 1.6795 -5.8550 10.1328 18 6 1.7510 -7.4203 10.9388 19 1 1.7832 -8.3278 10.3541 20 6 1.7659 -7.4870 12.3251 21 7 1.7272 -6.3810 13.0378 22 14 1.8424 -9.1464 13.1795 23 1 1.8778 -10.2265 12.1610 24 1 3.0662 -9.2157 14.0177 25 1 0.6435 -9.3163 14.0390 26 6 1.5694 -4.2530 5.1722 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6766 1.9563 0.8899 34 1 1.1493 -2.4723 0.8052 35 1 1.8307 -2.1772 3.5300 36 1 3.2845 -2.6911 2.6408 37 1 2.0491 -4.6475 1.7503 38 1 0.5950 -4.1342 2.6394 39 1 2.3438 -6.9857 3.4095 40 1 0.6610 -6.3761 3.5354 41 1 2.5792 -7.1659 5.7205 42 1 0.7945 -7.2238 5.7084 43 1 0.8211 -7.0258 8.2170 44 1 2.5994 -6.9520 8.2013 45 1 1.7372 -6.4277 14.0066 46 1 0.5362 -3.9585 4.9883 47 1 2.1517 -3.3975 5.5148 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001059197331.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:06 Heat of formation + Delta-G solvation = -122.277032 kcal Electronic energy + Delta-G solvation = -24876.979521 eV Core-core repulsion = 21183.860849 eV Total energy + Delta-G solvation = -3693.118672 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.18336 -40.84001 -38.83707 -36.45073 -35.45572 -34.60944 -33.91233 -31.29119 -30.81212 -28.54302 -27.89407 -27.64119 -25.51470 -24.11688 -22.87843 -21.56050 -20.72981 -20.62441 -19.58522 -18.15044 -18.08019 -17.50240 -16.96706 -16.90526 -16.77636 -16.48620 -15.98180 -15.58125 -15.42810 -15.07123 -14.63888 -14.54006 -14.39475 -14.07440 -13.94017 -13.63969 -13.56781 -13.27967 -13.17141 -13.16656 -13.10006 -12.92419 -12.87944 -12.61693 -12.37353 -12.08833 -12.05316 -11.94317 -11.73569 -11.64371 -11.55722 -11.17681 -11.01081 -10.76258 -10.30598 -10.10089 -9.71644 -8.71370 -8.36557 -6.16154 1.22285 1.40884 1.43855 1.52381 1.56295 1.64127 2.07539 2.22834 2.25394 2.97645 3.20497 3.42652 3.61765 3.71947 3.83328 3.84963 3.99214 4.05892 4.14005 4.20586 4.26602 4.32705 4.39344 4.43453 4.49218 4.52084 4.67378 4.74846 4.75755 4.87204 4.90179 4.91111 4.93985 5.05224 5.08257 5.09320 5.19170 5.30876 5.32895 5.34209 5.39695 5.43820 5.47819 6.18000 6.37121 6.57584 7.04270 7.08280 7.29043 8.73172 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.028402 B = 0.001821 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.592298 B =15371.506505 C =16051.848496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.108 4.108 3 C -0.136 4.136 4 C 0.503 3.497 5 O -0.595 6.595 6 N -0.715 5.715 7 C 0.113 3.887 8 C -0.101 4.101 9 C -0.088 4.088 10 H 0.087 0.913 11 C -0.108 4.108 12 C 0.085 3.915 13 N -0.619 5.619 14 C 0.542 3.458 15 O -0.572 6.572 16 C -0.118 4.118 17 S -0.156 6.156 18 C -0.545 4.545 19 H 0.084 0.916 20 C 0.012 3.988 21 N -0.912 5.912 22 Si 1.002 2.998 23 H -0.255 1.255 24 H -0.274 1.274 25 H -0.273 1.273 26 C 0.101 3.899 27 H 0.078 0.922 28 H 0.043 0.957 29 H 0.086 0.914 30 H 0.126 0.874 31 H 0.046 0.954 32 H 0.086 0.914 33 H 0.040 0.960 34 H 0.419 0.581 35 H 0.042 0.958 36 H 0.054 0.946 37 H 0.108 0.892 38 H 0.090 0.910 39 H 0.112 0.888 40 H 0.099 0.901 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.107 0.893 44 H 0.106 0.894 45 H 0.271 0.729 46 H 0.072 0.928 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.123 1.171 -35.794 35.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.129 4.129 3 C -0.193 4.193 4 C 0.291 3.709 5 O -0.476 6.476 6 N -0.367 5.367 7 C -0.012 4.012 8 C -0.139 4.139 9 C -0.108 4.108 10 H 0.105 0.895 11 C -0.146 4.146 12 C -0.037 4.037 13 N -0.353 5.353 14 C 0.330 3.670 15 O -0.451 6.451 16 C -0.269 4.269 17 S 0.071 5.929 18 C -0.693 4.693 19 H 0.102 0.898 20 C -0.192 4.192 21 N -0.549 5.549 22 Si 0.824 3.176 23 H -0.178 1.178 24 H -0.199 1.199 25 H -0.198 1.198 26 C -0.021 4.021 27 H 0.097 0.903 28 H 0.062 0.938 29 H 0.105 0.895 30 H 0.144 0.856 31 H 0.065 0.935 32 H 0.105 0.895 33 H 0.059 0.941 34 H 0.257 0.743 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.126 0.874 38 H 0.108 0.892 39 H 0.130 0.870 40 H 0.117 0.883 41 H 0.093 0.907 42 H 0.097 0.903 43 H 0.126 0.874 44 H 0.124 0.876 45 H 0.080 0.920 46 H 0.090 0.910 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.703 3.284 -34.290 34.553 hybrid contribution 0.085 -1.665 0.728 1.819 sum -2.618 1.618 -33.562 33.703 Atomic orbital electron populations 1.21812 0.91277 1.03729 1.03118 1.21365 0.98710 0.97198 0.95656 1.21640 1.00874 0.94536 1.02299 1.21494 0.79118 0.82113 0.88144 1.90715 1.40335 1.67332 1.49187 1.45899 1.53592 1.11718 1.25536 1.21372 0.98919 0.93528 0.87345 1.21642 1.02398 0.91920 0.97936 1.22272 1.00814 0.95689 0.91994 0.89455 1.22711 1.04187 0.95155 0.92516 1.22440 1.02947 0.84529 0.93744 1.48493 1.72873 1.10343 1.03619 1.19851 0.75485 0.89676 0.81999 1.90690 1.51225 1.27969 1.75216 1.23288 1.06362 0.99222 0.97998 1.85647 1.96892 1.14239 0.96093 1.23226 1.58852 0.92552 0.94660 0.89786 1.26179 0.93648 1.02305 0.97115 1.70199 1.47955 1.29770 1.06944 0.84858 0.78108 0.76665 0.78006 1.17844 1.19905 1.19843 1.22497 1.01086 0.90112 0.88399 0.90285 0.93822 0.89467 0.85605 0.93527 0.89495 0.94094 0.74332 0.93980 0.92723 0.87387 0.89181 0.86953 0.88292 0.90655 0.90314 0.87438 0.87572 0.91954 0.91020 0.93302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 9.09 71.98 0.65 -0.20 16 2 C -0.11 -1.06 3.26 -11.54 -0.04 -1.10 16 3 C -0.14 -1.77 8.48 71.98 0.61 -1.16 16 4 C 0.50 8.98 7.15 87.66 0.63 9.61 16 5 O -0.60 -17.59 15.98 -3.04 -0.05 -17.64 16 6 N -0.71 -8.17 5.45 -463.08 -2.52 -10.70 16 7 C 0.11 1.64 5.52 86.38 0.48 2.12 16 8 C -0.10 -0.72 4.84 30.59 0.15 -0.57 16 9 C -0.09 -1.10 3.07 -9.40 -0.03 -1.13 16 10 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 11 C -0.11 -0.97 6.42 31.79 0.20 -0.76 16 12 C 0.09 1.52 6.49 86.73 0.56 2.08 16 13 N -0.62 -17.68 3.33 -811.78 -2.70 -20.38 16 14 C 0.54 22.08 7.87 87.66 0.69 22.77 16 15 O -0.57 -29.13 16.12 -3.04 -0.05 -29.18 16 16 C -0.12 -4.96 5.35 71.24 0.38 -4.58 16 17 S -0.16 -9.00 20.57 -56.49 -1.16 -10.16 16 18 C -0.55 -31.73 9.50 67.95 0.65 -31.08 16 19 H 0.08 4.52 7.80 -2.91 -0.02 4.50 16 20 C 0.01 0.70 5.49 84.86 0.47 1.17 16 21 N -0.91 -57.02 13.22 21.65 0.29 -56.73 16 22 Si 1.00 43.99 29.55 68.60 2.03 46.02 16 23 H -0.25 -10.37 7.11 99.48 0.71 -9.67 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 25 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 26 C 0.10 2.37 5.57 86.86 0.48 2.85 16 27 H 0.08 0.18 7.56 -2.39 -0.02 0.16 16 28 H 0.04 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.05 0.74 8.10 -2.39 -0.02 0.72 16 32 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 33 H 0.04 0.71 8.10 -2.39 -0.02 0.69 16 34 H 0.42 1.39 7.89 -92.71 -0.73 0.66 16 35 H 0.04 0.88 7.46 -2.39 -0.02 0.86 16 36 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 38 H 0.09 0.45 8.10 -2.39 -0.02 0.43 16 39 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.10 0.56 8.04 -2.39 -0.02 0.55 16 41 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16 44 H 0.11 4.06 8.14 -2.40 -0.02 4.04 16 45 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 46 H 0.07 1.58 8.00 -2.39 -0.02 1.57 16 47 H 0.05 1.44 7.96 -2.38 -0.02 1.42 16 Total: -1.00 -90.50 398.68 1.93 -88.58 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: 0.21 Total: 10.16 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: 5.88 Total: 0.02 kcal Atomic # 7 Polarization: -82.87 SS G_CDS: -4.94 Total: -87.80 kcal Atomic # 8 Polarization: -46.72 SS G_CDS: -0.10 Total: -46.81 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 16 Polarization: -9.00 SS G_CDS: -1.16 Total: -10.16 kcal Total: -90.50 1.93 -88.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001059197331.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.702 kcal (2) G-P(sol) polarization free energy of solvation -90.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds