Wall clock time and date at job start Tue Mar 31 2020 15:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47229 * 2 1 4 4 C 1.50702 * 109.47230 * 120.00228 * 2 1 3 5 5 O 1.21286 * 119.99503 * 0.02562 * 4 2 1 6 6 N 1.34768 * 120.00365 * 180.02562 * 4 2 1 7 7 C 1.46496 * 120.00405 * 179.97438 * 6 4 2 8 8 C 1.53007 * 109.47318 * 179.97438 * 7 6 4 9 9 C 1.52997 * 109.46886 * 180.02562 * 8 7 6 10 10 H 1.08995 * 110.88890 * 57.42908 * 9 8 7 11 11 C 1.55162 * 111.00122 * 181.35316 * 9 8 7 12 12 C 1.54331 * 103.02217 * 153.37981 * 11 9 8 13 13 N 1.47024 * 107.26488 * 338.14016 * 12 11 9 14 14 C 1.34774 * 125.64967 * 178.85058 * 13 12 11 15 15 O 1.21281 * 120.00138 * 179.68987 * 14 13 12 16 16 C 1.50701 * 119.99741 * 359.69284 * 14 13 12 17 17 S 1.81005 * 109.47173 * 179.97438 * 16 14 13 18 18 C 1.76189 * 100.00097 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00127 * 0.02562 * 18 17 16 20 20 C 1.38805 * 120.00013 * 180.02562 * 18 17 16 21 21 N 1.31633 * 120.00034 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47174 * 270.00277 * 22 20 18 24 24 H 1.48501 * 109.47062 * 30.00228 * 22 20 18 25 25 H 1.48490 * 109.46901 * 150.00205 * 22 20 18 26 26 C 1.47429 * 108.70295 * 358.58556 * 13 12 11 27 27 H 1.09004 * 109.47108 * 299.99838 * 1 2 3 28 28 H 1.09001 * 109.47292 * 60.00047 * 1 2 3 29 29 H 1.08999 * 109.47137 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46688 * 240.00319 * 2 1 3 31 31 H 1.08996 * 109.47419 * 179.97438 * 3 2 1 32 32 H 1.08992 * 109.47093 * 300.00414 * 3 2 1 33 33 H 1.09004 * 109.46944 * 60.00061 * 3 2 1 34 34 H 0.97005 * 119.99835 * 359.97438 * 6 4 2 35 35 H 1.09009 * 109.46588 * 60.00098 * 7 6 4 36 36 H 1.08988 * 109.47416 * 300.00215 * 7 6 4 37 37 H 1.08999 * 109.47001 * 60.00013 * 8 7 6 38 38 H 1.08999 * 109.46776 * 300.00387 * 8 7 6 39 39 H 1.09008 * 110.71678 * 271.93948 * 11 9 8 40 40 H 1.08996 * 110.71787 * 35.02626 * 11 9 8 41 41 H 1.08996 * 109.99076 * 218.66161 * 12 11 9 42 42 H 1.08995 * 109.78026 * 97.49272 * 12 11 9 43 43 H 1.09005 * 109.47318 * 59.99759 * 16 14 13 44 44 H 1.09002 * 109.47150 * 299.99724 * 16 14 13 45 45 H 0.97001 * 119.99662 * 179.97438 * 21 20 18 46 46 H 1.08995 * 110.36645 * 143.19679 * 26 13 12 47 47 H 1.09004 * 110.36415 * 265.51784 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 1.2441 -1.1718 2.0285 6 7 3.3573 -0.8332 1.4440 7 6 3.8457 -1.5233 2.6404 8 6 5.3757 -1.5234 2.6403 9 6 5.8857 -2.2448 3.8895 10 1 5.4983 -3.2625 3.9360 11 6 7.4364 -2.2361 3.9426 12 6 7.7331 -2.3352 5.4539 13 7 6.5342 -1.8686 6.1655 14 6 6.3838 -1.8215 7.5040 15 8 5.3483 -1.4110 7.9838 16 6 7.5024 -2.2787 8.4045 17 16 6.9993 -2.0932 10.1333 18 6 8.4505 -2.6839 10.9393 19 1 9.2952 -3.0171 10.3546 20 6 8.5081 -2.7209 12.3256 21 7 9.5921 -3.1626 12.9277 22 14 7.0473 -2.1439 13.3369 23 1 7.1823 -0.6919 13.6178 24 1 5.7937 -2.3869 12.5789 25 1 7.0048 -2.8940 14.6177 26 6 5.5262 -1.4547 5.1726 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8932 -0.5138 -0.8900 31 1 3.1299 1.4425 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 3.9877 -0.4645 0.8055 35 1 3.4826 -2.5512 2.6405 36 1 3.4821 -1.0095 3.5301 37 1 5.7391 -0.4958 2.6399 38 1 5.7389 -2.0376 1.7505 39 1 7.8453 -3.0946 3.4097 40 1 7.8310 -1.3062 3.5332 41 1 8.5846 -1.7043 5.7086 42 1 7.9433 -3.3708 5.7213 43 1 8.3896 -1.6736 8.2177 44 1 7.7273 -3.3258 8.2015 45 1 9.6325 -3.1881 13.8966 46 1 4.5258 -1.7206 5.5140 47 1 5.5926 -0.3823 4.9889 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001059197332.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:12 Heat of formation + Delta-G solvation = -95.050882 kcal Electronic energy + Delta-G solvation = -24927.218413 eV Core-core repulsion = 21235.280356 eV Total energy + Delta-G solvation = -3691.938057 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.35278 -39.89046 -37.73482 -35.70547 -34.91239 -33.04088 -32.43255 -30.33594 -29.69676 -27.77196 -27.32661 -25.62299 -24.74183 -23.41286 -22.23210 -20.93155 -20.02987 -19.42666 -17.73458 -17.56592 -16.74408 -16.60395 -16.27298 -15.95104 -15.43084 -15.02306 -14.78863 -14.50599 -14.39426 -13.96002 -13.91633 -13.60825 -13.41626 -12.99947 -12.90791 -12.79634 -12.78070 -12.56804 -12.48999 -12.36875 -11.95538 -11.80945 -11.65902 -11.56278 -11.40491 -11.24529 -11.02464 -11.01470 -10.98099 -10.59291 -10.07616 -9.84976 -9.52368 -9.45056 -8.99695 -8.58327 -8.48970 -6.91523 -6.28503 -4.00207 2.29687 2.68523 2.77121 2.95290 3.21368 3.34173 3.52002 3.60935 4.03910 4.18236 4.30289 4.34051 4.36508 4.38605 4.47024 4.64222 4.72014 4.82549 4.89434 4.97344 5.06156 5.10641 5.12106 5.13349 5.21129 5.22966 5.29755 5.37705 5.43805 5.45223 5.55243 5.58276 5.61833 5.65138 5.66127 5.74504 5.82754 5.86208 5.94646 6.01902 6.03847 6.34547 7.08364 7.57963 7.86627 7.94542 8.41704 8.44304 9.17784 10.80639 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.023940 B = 0.001925 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.329643 B =14544.995938 C =15408.834186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.115 4.115 3 C -0.145 4.145 4 C 0.513 3.487 5 O -0.536 6.536 6 N -0.732 5.732 7 C 0.113 3.887 8 C -0.117 4.117 9 C -0.099 4.099 10 H 0.090 0.910 11 C -0.124 4.124 12 C 0.100 3.900 13 N -0.626 5.626 14 C 0.546 3.454 15 O -0.517 6.517 16 C -0.117 4.117 17 S -0.143 6.143 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.880 5.880 22 Si 0.856 3.144 23 H -0.267 1.267 24 H -0.235 1.235 25 H -0.274 1.274 26 C 0.111 3.889 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.096 0.904 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.399 0.601 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.096 0.904 44 H 0.096 0.904 45 H 0.271 0.729 46 H 0.079 0.921 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.411 5.547 -32.337 33.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.136 4.136 3 C -0.203 4.203 4 C 0.299 3.701 5 O -0.412 6.412 6 N -0.384 5.384 7 C -0.010 4.010 8 C -0.155 4.155 9 C -0.119 4.119 10 H 0.108 0.892 11 C -0.162 4.162 12 C -0.024 4.024 13 N -0.363 5.363 14 C 0.335 3.665 15 O -0.392 6.392 16 C -0.268 4.268 17 S 0.084 5.916 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.159 1.159 25 H -0.199 1.199 26 C -0.012 4.012 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.114 0.886 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.234 0.766 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.114 0.886 44 H 0.114 0.886 45 H 0.081 0.919 46 H 0.097 0.903 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.430 5.771 -30.741 32.971 hybrid contribution 1.337 -0.179 -0.225 1.368 sum -9.093 5.592 -30.966 32.754 Atomic orbital electron populations 1.21623 0.92391 1.02937 1.02228 1.21316 0.98557 0.97286 0.96486 1.21799 1.01097 0.94192 1.03165 1.20753 0.82101 0.79517 0.87734 1.90737 1.55275 1.48163 1.47000 1.46036 1.07235 1.59371 1.25773 1.21452 0.93728 0.97885 0.87933 1.21720 0.94101 1.01612 0.98111 1.22314 0.95817 1.00283 0.93505 0.89161 1.22682 0.95082 1.03214 0.95238 1.22026 0.88459 1.00321 0.91559 1.48455 1.16736 1.66247 1.04857 1.19994 0.88747 0.77478 0.80326 1.90713 1.29197 1.45511 1.73749 1.23255 0.99440 1.04629 0.99452 1.84806 1.25591 1.85917 0.95309 1.22307 1.00411 1.49462 0.94684 0.89399 1.24708 0.96109 0.93612 0.96838 1.69940 1.27119 1.44589 1.10035 0.86737 0.84490 0.79830 0.80828 1.19197 1.15902 1.19919 1.22254 0.93499 0.98382 0.87098 0.91821 0.91996 0.91921 0.88569 0.92180 0.91295 0.91898 0.76640 0.91246 0.90982 0.90732 0.90606 0.89817 0.90378 0.91083 0.91089 0.88618 0.88550 0.91948 0.90282 0.91617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.85 8.48 37.16 0.32 -0.54 16 2 C -0.12 -0.63 3.26 -91.77 -0.30 -0.93 16 3 C -0.14 -0.57 9.09 37.16 0.34 -0.23 16 4 C 0.51 4.48 7.15 -10.99 -0.08 4.40 16 5 O -0.54 -7.25 15.98 5.55 0.09 -7.16 16 6 N -0.73 -4.56 5.45 -60.29 -0.33 -4.89 16 7 C 0.11 0.82 5.52 -4.04 -0.02 0.80 16 8 C -0.12 -0.58 4.84 -26.73 -0.13 -0.71 16 9 C -0.10 -0.71 3.08 -88.47 -0.27 -0.98 16 10 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 11 C -0.12 -0.80 6.42 -24.89 -0.16 -0.96 16 12 C 0.10 0.99 6.49 -3.06 -0.02 0.97 16 13 N -0.63 -8.67 3.33 -170.52 -0.57 -9.24 16 14 C 0.55 10.31 7.87 -10.99 -0.09 10.22 16 15 O -0.52 -11.77 16.12 5.56 0.09 -11.68 16 16 C -0.12 -2.35 5.35 36.01 0.19 -2.16 16 17 S -0.14 -3.70 18.55 -107.50 -1.99 -5.69 16 18 C -0.52 -15.16 10.04 30.94 0.31 -14.85 16 19 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 20 C 0.10 2.83 5.50 -17.43 -0.10 2.73 16 21 N -0.88 -26.68 13.97 55.49 0.78 -25.90 16 22 Si 0.86 22.04 27.74 -169.99 -4.72 17.32 16 23 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.24 -6.07 6.74 56.52 0.38 -5.69 16 25 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 26 C 0.11 1.23 5.56 -2.53 -0.01 1.22 16 27 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 30 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.16 7.56 -51.93 -0.39 -0.23 16 32 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.40 1.25 7.89 -40.82 -0.32 0.93 16 35 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 36 H 0.07 0.67 7.46 -51.94 -0.39 0.28 16 37 H 0.07 0.33 8.10 -51.93 -0.42 -0.09 16 38 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 39 H 0.08 0.41 8.14 -51.92 -0.42 -0.01 16 40 H 0.08 0.43 8.04 -51.93 -0.42 0.01 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.10 1.79 8.14 -51.91 -0.42 1.37 16 44 H 0.10 1.81 8.14 -51.92 -0.42 1.39 16 45 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 46 H 0.08 1.02 7.96 -51.93 -0.41 0.61 16 47 H 0.07 0.70 8.00 -51.93 -0.42 0.29 16 LS Contribution 395.99 15.07 5.97 5.97 Total: -1.00 -37.38 395.99 -8.97 -46.34 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -8.26 Total: -4.06 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: -0.02 Total: -1.01 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: -0.12 Total: -40.02 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: 0.18 Total: -18.84 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.72 Total: 17.32 kcal Atomic # 16 Polarization: -3.70 SS G_CDS: -1.99 Total: -5.69 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -37.38 -8.97 -46.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001059197332.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.710 kcal (2) G-P(sol) polarization free energy of solvation -37.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds