Wall clock time and date at job start Tue Mar 31 2020 15:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47229 * 2 1 4 4 C 1.50702 * 109.47230 * 120.00228 * 2 1 3 5 5 O 1.21286 * 119.99503 * 0.02562 * 4 2 1 6 6 N 1.34768 * 120.00365 * 180.02562 * 4 2 1 7 7 C 1.46496 * 120.00405 * 179.97438 * 6 4 2 8 8 C 1.53007 * 109.47318 * 179.97438 * 7 6 4 9 9 C 1.52997 * 109.46886 * 180.02562 * 8 7 6 10 10 H 1.08995 * 110.88890 * 57.42908 * 9 8 7 11 11 C 1.55162 * 111.00122 * 181.35316 * 9 8 7 12 12 C 1.54331 * 103.02217 * 153.37981 * 11 9 8 13 13 N 1.47024 * 107.26488 * 338.14016 * 12 11 9 14 14 C 1.34774 * 125.64967 * 178.85058 * 13 12 11 15 15 O 1.21281 * 120.00138 * 179.68987 * 14 13 12 16 16 C 1.50701 * 119.99741 * 359.69284 * 14 13 12 17 17 S 1.81005 * 109.47173 * 179.97438 * 16 14 13 18 18 C 1.76189 * 100.00097 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00127 * 0.02562 * 18 17 16 20 20 C 1.38805 * 120.00013 * 180.02562 * 18 17 16 21 21 N 1.31633 * 120.00034 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47174 * 270.00277 * 22 20 18 24 24 H 1.48501 * 109.47062 * 30.00228 * 22 20 18 25 25 H 1.48490 * 109.46901 * 150.00205 * 22 20 18 26 26 C 1.47429 * 108.70295 * 358.58556 * 13 12 11 27 27 H 1.09004 * 109.47108 * 299.99838 * 1 2 3 28 28 H 1.09001 * 109.47292 * 60.00047 * 1 2 3 29 29 H 1.08999 * 109.47137 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46688 * 240.00319 * 2 1 3 31 31 H 1.08996 * 109.47419 * 179.97438 * 3 2 1 32 32 H 1.08992 * 109.47093 * 300.00414 * 3 2 1 33 33 H 1.09004 * 109.46944 * 60.00061 * 3 2 1 34 34 H 0.97005 * 119.99835 * 359.97438 * 6 4 2 35 35 H 1.09009 * 109.46588 * 60.00098 * 7 6 4 36 36 H 1.08988 * 109.47416 * 300.00215 * 7 6 4 37 37 H 1.08999 * 109.47001 * 60.00013 * 8 7 6 38 38 H 1.08999 * 109.46776 * 300.00387 * 8 7 6 39 39 H 1.09008 * 110.71678 * 271.93948 * 11 9 8 40 40 H 1.08996 * 110.71787 * 35.02626 * 11 9 8 41 41 H 1.08996 * 109.99076 * 218.66161 * 12 11 9 42 42 H 1.08995 * 109.78026 * 97.49272 * 12 11 9 43 43 H 1.09005 * 109.47318 * 59.99759 * 16 14 13 44 44 H 1.09002 * 109.47150 * 299.99724 * 16 14 13 45 45 H 0.97001 * 119.99662 * 179.97438 * 21 20 18 46 46 H 1.08995 * 110.36645 * 143.19679 * 26 13 12 47 47 H 1.09004 * 110.36415 * 265.51784 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 1.2441 -1.1718 2.0285 6 7 3.3573 -0.8332 1.4440 7 6 3.8457 -1.5233 2.6404 8 6 5.3757 -1.5234 2.6403 9 6 5.8857 -2.2448 3.8895 10 1 5.4983 -3.2625 3.9360 11 6 7.4364 -2.2361 3.9426 12 6 7.7331 -2.3352 5.4539 13 7 6.5342 -1.8686 6.1655 14 6 6.3838 -1.8215 7.5040 15 8 5.3483 -1.4110 7.9838 16 6 7.5024 -2.2787 8.4045 17 16 6.9993 -2.0932 10.1333 18 6 8.4505 -2.6839 10.9393 19 1 9.2952 -3.0171 10.3546 20 6 8.5081 -2.7209 12.3256 21 7 9.5921 -3.1626 12.9277 22 14 7.0473 -2.1439 13.3369 23 1 7.1823 -0.6919 13.6178 24 1 5.7937 -2.3869 12.5789 25 1 7.0048 -2.8940 14.6177 26 6 5.5262 -1.4547 5.1726 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8932 -0.5138 -0.8900 31 1 3.1299 1.4425 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 3.9877 -0.4645 0.8055 35 1 3.4826 -2.5512 2.6405 36 1 3.4821 -1.0095 3.5301 37 1 5.7391 -0.4958 2.6399 38 1 5.7389 -2.0376 1.7505 39 1 7.8453 -3.0946 3.4097 40 1 7.8310 -1.3062 3.5332 41 1 8.5846 -1.7043 5.7086 42 1 7.9433 -3.3708 5.7213 43 1 8.3896 -1.6736 8.2177 44 1 7.7273 -3.3258 8.2015 45 1 9.6325 -3.1881 13.8966 46 1 4.5258 -1.7206 5.5140 47 1 5.5926 -0.3823 4.9889 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001059197332.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:10 Heat of formation + Delta-G solvation = -121.575462 kcal Electronic energy + Delta-G solvation = -24928.368605 eV Core-core repulsion = 21235.280356 eV Total energy + Delta-G solvation = -3693.088249 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.20755 -40.85023 -38.86166 -36.45602 -35.45656 -34.69744 -33.93086 -31.33794 -30.84457 -28.55271 -27.93006 -27.79418 -25.54016 -24.13085 -22.88506 -21.56877 -20.78479 -20.62605 -19.61455 -18.16650 -18.12155 -17.52637 -17.14291 -16.96824 -16.79797 -16.46137 -15.90011 -15.64547 -15.44281 -15.07165 -14.92407 -14.60579 -14.41044 -14.12783 -13.97345 -13.66263 -13.59857 -13.37604 -13.29673 -13.17057 -13.10871 -13.03640 -12.88170 -12.69946 -12.37601 -12.08764 -12.05293 -11.94613 -11.88060 -11.65384 -11.56034 -11.19428 -11.06284 -10.76428 -10.57006 -10.10063 -9.74239 -9.04360 -8.53920 -6.25523 0.93566 1.29024 1.43410 1.47303 1.51273 1.64017 2.03781 2.22194 2.23347 2.65708 2.84172 3.33751 3.61109 3.71822 3.74631 3.83420 3.98891 4.05677 4.10455 4.18012 4.25655 4.31784 4.35969 4.42092 4.49046 4.51627 4.66818 4.74767 4.75599 4.86865 4.90027 4.90673 4.93801 5.05183 5.07638 5.09115 5.18662 5.30505 5.32205 5.32912 5.42846 5.47716 5.68547 6.08637 6.33382 6.57321 6.91203 7.02264 7.28718 8.58328 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.023940 B = 0.001925 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.329643 B =14544.995938 C =15408.834186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.109 4.109 3 C -0.142 4.142 4 C 0.504 3.496 5 O -0.595 6.595 6 N -0.715 5.715 7 C 0.113 3.887 8 C -0.102 4.102 9 C -0.088 4.088 10 H 0.087 0.913 11 C -0.109 4.109 12 C 0.084 3.916 13 N -0.617 5.617 14 C 0.543 3.457 15 O -0.568 6.568 16 C -0.100 4.100 17 S -0.179 6.179 18 C -0.529 4.529 19 H 0.064 0.936 20 C 0.048 3.952 21 N -0.914 5.914 22 Si 0.912 3.088 23 H -0.262 1.262 24 H -0.240 1.240 25 H -0.257 1.257 26 C 0.102 3.898 27 H 0.040 0.960 28 H 0.086 0.914 29 H 0.046 0.954 30 H 0.126 0.874 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.043 0.957 34 H 0.419 0.581 35 H 0.054 0.946 36 H 0.043 0.957 37 H 0.090 0.910 38 H 0.106 0.894 39 H 0.111 0.889 40 H 0.098 0.902 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.111 0.889 44 H 0.110 0.890 45 H 0.278 0.722 46 H 0.052 0.948 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.369 6.193 -35.815 37.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.130 4.130 3 C -0.199 4.199 4 C 0.292 3.708 5 O -0.475 6.475 6 N -0.368 5.368 7 C -0.011 4.011 8 C -0.139 4.139 9 C -0.108 4.108 10 H 0.106 0.894 11 C -0.147 4.147 12 C -0.038 4.038 13 N -0.351 5.351 14 C 0.331 3.669 15 O -0.448 6.448 16 C -0.251 4.251 17 S 0.047 5.953 18 C -0.676 4.676 19 H 0.082 0.918 20 C -0.157 4.157 21 N -0.552 5.552 22 Si 0.734 3.266 23 H -0.186 1.186 24 H -0.164 1.164 25 H -0.181 1.181 26 C -0.020 4.020 27 H 0.059 0.941 28 H 0.105 0.895 29 H 0.065 0.935 30 H 0.143 0.857 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.062 0.938 34 H 0.256 0.744 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.108 0.892 38 H 0.125 0.875 39 H 0.129 0.871 40 H 0.117 0.883 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.129 0.871 44 H 0.128 0.872 45 H 0.087 0.913 46 H 0.070 0.930 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.314 6.420 -34.302 36.119 hybrid contribution 1.064 -0.400 0.690 1.330 sum -8.250 6.020 -33.612 35.129 Atomic orbital electron populations 1.21640 0.93482 1.01917 1.02303 1.21367 0.97674 0.98256 0.95687 1.21810 1.02269 0.92727 1.03126 1.21474 0.82382 0.78847 0.88119 1.90714 1.56843 1.50792 1.49189 1.45906 1.06935 1.58357 1.25582 1.21378 0.95668 0.96732 0.87367 1.21643 0.91677 1.02690 0.97936 1.22271 0.96777 0.99657 0.92099 0.89421 1.22703 0.93869 1.05591 0.92499 1.22448 0.86959 1.00572 0.93794 1.48463 1.18803 1.64245 1.03624 1.19722 0.87578 0.77579 0.82015 1.90688 1.30710 1.48234 1.75128 1.23194 1.00474 1.05960 0.95486 1.84769 1.24614 1.85850 1.00037 1.22422 1.00839 1.49261 0.95088 0.91810 1.25523 0.98549 0.93728 0.97944 1.70008 1.28790 1.45588 1.10798 0.85895 0.81104 0.79758 0.79795 1.18618 1.16419 1.18096 1.22509 0.91651 0.99595 0.88233 0.94056 0.89532 0.93528 0.85662 0.90298 0.89510 0.93771 0.74356 0.92721 0.93819 0.89158 0.87521 0.87101 0.88320 0.90291 0.90665 0.87061 0.87171 0.91296 0.92982 0.90840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 8.48 71.98 0.61 -1.07 16 2 C -0.11 -1.00 3.26 -11.54 -0.04 -1.04 16 3 C -0.14 -0.77 9.09 71.98 0.65 -0.11 16 4 C 0.50 8.59 7.15 87.66 0.63 9.21 16 5 O -0.59 -17.01 15.98 -3.05 -0.05 -17.06 16 6 N -0.72 -7.60 5.45 -463.06 -2.52 -10.12 16 7 C 0.11 1.52 5.52 86.38 0.48 2.00 16 8 C -0.10 -0.63 4.84 30.60 0.15 -0.48 16 9 C -0.09 -1.01 3.08 -9.40 -0.03 -1.04 16 10 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 11 C -0.11 -0.91 6.42 31.79 0.20 -0.70 16 12 C 0.08 1.43 6.49 86.73 0.56 1.99 16 13 N -0.62 -16.44 3.33 -811.78 -2.70 -19.14 16 14 C 0.54 20.56 7.87 87.66 0.69 21.25 16 15 O -0.57 -26.61 16.12 -3.03 -0.05 -26.66 16 16 C -0.10 -4.01 5.35 71.24 0.38 -3.63 16 17 S -0.18 -9.41 18.55 -56.49 -1.05 -10.46 16 18 C -0.53 -31.28 10.04 67.96 0.68 -30.60 16 19 H 0.06 3.95 8.03 -2.91 -0.02 3.93 16 20 C 0.05 2.87 5.50 84.86 0.47 3.33 16 21 N -0.91 -55.93 13.97 21.65 0.30 -55.63 16 22 Si 0.91 45.83 27.74 68.60 1.90 47.73 16 23 H -0.26 -12.80 7.11 99.48 0.71 -12.09 16 24 H -0.24 -12.18 6.74 99.48 0.67 -11.51 16 25 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 26 C 0.10 2.20 5.56 86.85 0.48 2.68 16 27 H 0.04 0.68 8.10 -2.38 -0.02 0.66 16 28 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.05 0.71 8.10 -2.39 -0.02 0.69 16 30 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.08 0.13 7.56 -2.39 -0.02 0.11 16 32 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 33 H 0.04 0.42 8.14 -2.38 -0.02 0.40 16 34 H 0.42 1.12 7.89 -92.70 -0.73 0.39 16 35 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 36 H 0.04 0.85 7.46 -2.39 -0.02 0.83 16 37 H 0.09 0.37 8.10 -2.39 -0.02 0.35 16 38 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 39 H 0.11 0.46 8.14 -2.38 -0.02 0.44 16 40 H 0.10 0.51 8.04 -2.39 -0.02 0.49 16 41 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16 44 H 0.11 4.07 8.14 -2.39 -0.02 4.05 16 45 H 0.28 15.69 8.31 -92.71 -0.77 14.92 16 46 H 0.05 1.41 7.96 -2.39 -0.02 1.39 16 47 H 0.07 1.48 8.00 -2.38 -0.02 1.46 16 Total: -1.00 -86.45 395.99 1.93 -84.51 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: 0.17 Total: 5.05 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: 5.92 Total: 1.78 kcal Atomic # 7 Polarization: -79.97 SS G_CDS: -4.92 Total: -84.89 kcal Atomic # 8 Polarization: -43.63 SS G_CDS: -0.10 Total: -43.72 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 1.90 Total: 47.73 kcal Atomic # 16 Polarization: -9.41 SS G_CDS: -1.05 Total: -10.46 kcal Total: -86.45 1.93 -84.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001059197332.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.063 kcal (2) G-P(sol) polarization free energy of solvation -86.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds