Wall clock time and date at job start Tue Mar 31 2020 15:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.46894 * 2 1 4 4 C 1.50703 * 109.46949 * 179.97438 * 3 2 1 5 5 O 1.21279 * 120.00087 * 0.02562 * 4 3 2 6 6 N 1.34778 * 119.99839 * 180.02562 * 4 3 2 7 7 C 1.46927 * 120.63220 * 5.39230 * 6 4 3 8 8 C 1.53194 * 108.77370 * 233.58880 * 7 6 4 9 9 C 1.53033 * 109.31506 * 305.36389 * 8 7 6 10 10 C 1.53045 * 109.53992 * 61.36597 * 9 8 7 11 11 C 1.46925 * 120.62994 * 185.37369 * 6 4 3 12 12 H 1.09003 * 109.58856 * 246.34205 * 11 6 4 13 13 C 1.53009 * 109.58610 * 6.62487 * 11 6 4 14 14 N 1.46498 * 109.46900 * 178.20808 * 13 11 6 15 15 C 1.34775 * 119.99824 * 185.29062 * 14 13 11 16 16 O 1.21279 * 120.00111 * 0.02562 * 15 14 13 17 17 C 1.50697 * 120.00356 * 179.72290 * 15 14 13 18 18 S 1.80993 * 109.47582 * 180.02562 * 17 15 14 19 19 C 1.76199 * 100.00227 * 179.97438 * 18 17 15 20 20 H 1.07995 * 120.00016 * 0.02562 * 19 18 17 21 21 C 1.38801 * 120.00043 * 179.97438 * 19 18 17 22 22 N 1.31631 * 120.00083 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99990 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46674 * 90.00392 * 23 21 19 25 25 H 1.48495 * 109.47053 * 210.00717 * 23 21 19 26 26 H 1.48500 * 109.46958 * 330.00800 * 23 21 19 27 27 H 1.08994 * 109.47595 * 60.00132 * 1 2 3 28 28 H 1.09006 * 109.46973 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47105 * 299.99692 * 1 2 3 30 30 H 1.09003 * 109.47142 * 239.99826 * 2 1 3 31 31 H 1.09005 * 109.47197 * 120.00152 * 2 1 3 32 32 H 1.08998 * 109.46993 * 60.00240 * 3 2 1 33 33 H 1.08999 * 109.47698 * 299.99923 * 3 2 1 34 34 H 1.08992 * 109.58481 * 353.37497 * 7 6 4 35 35 H 1.09003 * 109.58373 * 113.65879 * 7 6 4 36 36 H 1.09004 * 109.49627 * 65.31852 * 8 7 6 37 37 H 1.08998 * 109.49509 * 185.41450 * 8 7 6 38 38 H 1.09002 * 109.46529 * 181.38983 * 9 8 7 39 39 H 1.09006 * 109.46416 * 301.36500 * 9 8 7 40 40 H 1.08998 * 109.50212 * 178.68149 * 10 9 8 41 41 H 1.09000 * 109.49242 * 58.58298 * 10 9 8 42 42 H 1.08990 * 109.47049 * 58.20577 * 13 11 6 43 43 H 1.08996 * 109.46873 * 298.20842 * 13 11 6 44 44 H 0.97003 * 120.00346 * 5.29951 * 14 13 11 45 45 H 1.09002 * 109.46953 * 300.01024 * 17 15 14 46 46 H 1.09003 * 109.46776 * 60.00023 * 17 15 14 47 47 H 0.96998 * 119.99849 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 8 4.1534 0.3922 0.0006 6 7 4.2208 2.6097 0.0013 7 6 3.5050 3.8873 0.1202 8 6 3.9189 4.7944 -1.0429 9 6 5.4433 4.9276 -1.0632 10 6 6.0747 3.5500 -1.2769 11 6 5.6852 2.6287 -0.1165 12 1 6.1216 3.0007 0.8105 13 6 6.1961 1.2130 -0.3920 14 7 7.6521 1.2417 -0.5514 15 6 8.3131 0.1225 -0.9076 16 8 7.7026 -0.9082 -1.0967 17 6 9.8101 0.1534 -1.0777 18 16 10.3972 -1.4905 -1.5562 19 6 12.1257 -1.1732 -1.6833 20 1 12.5092 -0.1838 -1.4828 21 6 12.9945 -2.1951 -2.0403 22 7 12.5270 -3.4012 -2.2843 23 14 14.8271 -1.8589 -2.1744 24 1 15.4729 -2.1051 -0.8600 25 1 15.4221 -2.7588 -3.1948 26 1 15.0430 -0.4453 -2.5749 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6766 1.9562 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 2.4305 3.7092 0.0801 35 1 3.7615 4.3631 1.0667 36 1 3.5792 4.3590 -1.9826 37 1 3.4694 5.7790 -0.9140 38 1 5.7391 5.5924 -1.8748 39 1 5.7846 5.3398 -0.1135 40 1 7.1595 3.6488 -1.3146 41 1 5.7146 3.1263 -2.2144 42 1 5.7380 0.8327 -1.3049 43 1 5.9347 0.5635 0.4435 44 1 8.1404 2.0661 -0.4004 45 1 10.0729 0.8727 -1.8534 46 1 10.2766 0.4467 -0.1372 47 1 13.1342 -4.1153 -2.5341 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001061969318.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:23 Heat of formation + Delta-G solvation = -78.599195 kcal Electronic energy + Delta-G solvation = -25949.843543 eV Core-core repulsion = 22258.618885 eV Total energy + Delta-G solvation = -3691.224659 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.97478 -38.85638 -37.81973 -35.18130 -34.32965 -33.23099 -32.37449 -31.67597 -29.23967 -28.47491 -26.30951 -25.40550 -24.84117 -22.92893 -21.77772 -20.97775 -20.30607 -19.13998 -17.86324 -17.30467 -16.58911 -16.24041 -15.82409 -15.38478 -15.23540 -14.91633 -14.75922 -14.71302 -14.42624 -14.15150 -13.93394 -13.70307 -13.45839 -13.25583 -13.02659 -12.69581 -12.49412 -12.32052 -12.29928 -11.99328 -11.74428 -11.50328 -11.37771 -11.31348 -11.14809 -11.02508 -11.00705 -10.99113 -10.95705 -10.71300 -9.75923 -9.57139 -9.14144 -9.01687 -8.97392 -8.54232 -8.14884 -6.42696 -6.15989 -3.85791 2.38640 2.52456 3.17956 3.25565 3.29526 3.32136 3.40372 3.88865 4.13137 4.25846 4.28060 4.40369 4.45596 4.57177 4.60676 4.69675 4.82023 4.83960 5.03241 5.07685 5.13393 5.16472 5.18701 5.27305 5.27467 5.31152 5.40336 5.43473 5.50326 5.63014 5.64693 5.74552 5.77336 5.87866 5.88143 5.97345 6.01391 6.09417 6.12098 6.22123 6.45967 6.78348 7.09650 7.64697 7.87725 7.97814 8.40655 8.81516 9.28924 10.91432 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018400 B = 0.002402 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.380934 B =11652.777566 C =12986.412812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.113 4.113 3 C -0.138 4.138 4 C 0.507 3.493 5 O -0.515 6.515 6 N -0.612 5.612 7 C 0.109 3.891 8 C -0.137 4.137 9 C -0.120 4.120 10 C -0.134 4.134 11 C 0.136 3.864 12 H 0.077 0.923 13 C 0.128 3.872 14 N -0.744 5.744 15 C 0.530 3.470 16 O -0.512 6.512 17 C -0.152 4.152 18 S -0.060 6.060 19 C -0.534 4.534 20 H 0.072 0.928 21 C 0.072 3.928 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.273 1.273 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.096 0.904 44 H 0.390 0.610 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.479 21.150 5.611 32.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C -0.178 4.178 4 C 0.295 3.705 5 O -0.390 6.390 6 N -0.347 5.347 7 C -0.014 4.014 8 C -0.175 4.175 9 C -0.158 4.158 10 C -0.172 4.172 11 C 0.033 3.967 12 H 0.095 0.905 13 C 0.005 3.995 14 N -0.401 5.401 15 C 0.316 3.684 16 O -0.386 6.386 17 C -0.303 4.303 18 S 0.166 5.834 19 C -0.683 4.683 20 H 0.090 0.910 21 C -0.137 4.137 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.113 0.887 44 H 0.224 0.776 45 H 0.106 0.894 46 H 0.106 0.894 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -24.179 18.637 5.249 30.976 hybrid contribution 2.125 2.100 0.167 2.993 sum -22.054 20.737 5.416 30.752 Atomic orbital electron populations 1.21784 0.95512 1.02082 1.01534 1.21318 0.95203 0.94543 1.03995 1.21765 0.91770 1.00327 1.03927 1.20917 0.90452 0.83246 0.75867 1.90839 1.68621 1.31299 1.48203 1.48155 1.06376 1.06294 1.73896 1.21762 0.97044 0.83780 0.98832 1.21936 0.96817 0.99776 0.98972 1.21520 0.94896 0.96976 1.02364 1.22031 1.01339 0.95094 0.98744 1.21479 0.79866 0.96775 0.98587 0.90539 1.22029 0.79070 0.93966 1.04410 1.46256 1.07998 1.12699 1.73178 1.20208 0.89251 0.83005 0.75954 1.90723 1.69110 1.30677 1.48059 1.23530 0.93943 1.08035 1.04776 1.85438 1.05138 1.03626 1.89177 1.22876 0.92101 0.99072 1.54227 0.90990 1.24998 0.99504 0.94465 0.94706 1.70027 1.35477 1.01064 1.43730 0.86172 0.83036 0.78261 0.78039 1.20301 1.20784 1.19739 0.92782 0.92298 0.92827 0.90960 0.91057 0.89148 0.89038 0.89455 0.91138 0.91297 0.90588 0.91364 0.91638 0.90347 0.91052 0.90814 0.88654 0.77621 0.89416 0.89399 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.91 37.16 0.37 -0.56 16 2 C -0.11 -0.95 5.22 -26.73 -0.14 -1.09 16 3 C -0.14 -0.96 4.05 -27.88 -0.11 -1.07 16 4 C 0.51 5.41 7.53 -10.98 -0.08 5.32 16 5 O -0.51 -7.95 11.53 5.56 0.06 -7.88 16 6 N -0.61 -5.27 2.97 -165.21 -0.49 -5.76 16 7 C 0.11 0.53 6.35 -3.71 -0.02 0.51 16 8 C -0.14 -0.63 6.08 -26.61 -0.16 -0.79 16 9 C -0.12 -0.68 5.88 -26.69 -0.16 -0.84 16 10 C -0.13 -1.08 5.10 -26.61 -0.14 -1.22 16 11 C 0.14 1.33 3.06 -67.59 -0.21 1.12 16 12 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 13 C 0.13 1.87 3.56 -4.04 -0.01 1.85 16 14 N -0.74 -11.17 5.22 -60.30 -0.31 -11.48 16 15 C 0.53 10.86 7.85 -10.99 -0.09 10.78 16 16 O -0.51 -12.92 15.86 5.56 0.09 -12.84 16 17 C -0.15 -3.24 6.16 36.00 0.22 -3.02 16 18 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 19 C -0.53 -15.64 9.50 30.94 0.29 -15.35 16 20 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 21 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 22 N -0.87 -26.82 13.22 55.49 0.73 -26.08 16 23 Si 0.92 21.85 29.55 -169.99 -5.02 16.82 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 31 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 32 H 0.09 0.44 7.72 -51.93 -0.40 0.04 16 33 H 0.09 0.48 7.91 -51.93 -0.41 0.07 16 34 H 0.09 0.27 5.93 -51.93 -0.31 -0.03 16 35 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.08 0.61 7.09 -51.93 -0.37 0.24 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 1.28 7.23 -51.93 -0.38 0.91 16 43 H 0.10 1.67 6.24 -51.93 -0.32 1.34 16 44 H 0.39 4.45 7.48 -40.82 -0.31 4.14 16 45 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 46 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 47 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 385.62 15.07 5.81 5.81 Total: -1.00 -37.68 385.62 -9.63 -47.31 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -7.95 Total: 0.34 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -0.33 Total: -2.33 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: -0.07 Total: -43.32 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: 0.15 Total: -20.72 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -37.68 -9.63 -47.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001061969318.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.288 kcal (2) G-P(sol) polarization free energy of solvation -37.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds