Wall clock time and date at job start Tue Mar 31 2020 15:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.46894 * 2 1 4 4 C 1.50703 * 109.46949 * 179.97438 * 3 2 1 5 5 O 1.21279 * 120.00087 * 0.02562 * 4 3 2 6 6 N 1.34778 * 119.99839 * 180.02562 * 4 3 2 7 7 C 1.46927 * 120.63220 * 5.39230 * 6 4 3 8 8 C 1.53194 * 108.77370 * 233.58880 * 7 6 4 9 9 C 1.53033 * 109.31506 * 305.36389 * 8 7 6 10 10 C 1.53045 * 109.53992 * 61.36597 * 9 8 7 11 11 C 1.46925 * 120.62994 * 185.37369 * 6 4 3 12 12 H 1.09003 * 109.58856 * 246.34205 * 11 6 4 13 13 C 1.53009 * 109.58610 * 6.62487 * 11 6 4 14 14 N 1.46498 * 109.46900 * 178.20808 * 13 11 6 15 15 C 1.34775 * 119.99824 * 185.29062 * 14 13 11 16 16 O 1.21279 * 120.00111 * 0.02562 * 15 14 13 17 17 C 1.50697 * 120.00356 * 179.72290 * 15 14 13 18 18 S 1.80993 * 109.47582 * 180.02562 * 17 15 14 19 19 C 1.76199 * 100.00227 * 179.97438 * 18 17 15 20 20 H 1.07995 * 120.00016 * 0.02562 * 19 18 17 21 21 C 1.38801 * 120.00043 * 179.97438 * 19 18 17 22 22 N 1.31631 * 120.00083 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99990 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46674 * 90.00392 * 23 21 19 25 25 H 1.48495 * 109.47053 * 210.00717 * 23 21 19 26 26 H 1.48500 * 109.46958 * 330.00800 * 23 21 19 27 27 H 1.08994 * 109.47595 * 60.00132 * 1 2 3 28 28 H 1.09006 * 109.46973 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47105 * 299.99692 * 1 2 3 30 30 H 1.09003 * 109.47142 * 239.99826 * 2 1 3 31 31 H 1.09005 * 109.47197 * 120.00152 * 2 1 3 32 32 H 1.08998 * 109.46993 * 60.00240 * 3 2 1 33 33 H 1.08999 * 109.47698 * 299.99923 * 3 2 1 34 34 H 1.08992 * 109.58481 * 353.37497 * 7 6 4 35 35 H 1.09003 * 109.58373 * 113.65879 * 7 6 4 36 36 H 1.09004 * 109.49627 * 65.31852 * 8 7 6 37 37 H 1.08998 * 109.49509 * 185.41450 * 8 7 6 38 38 H 1.09002 * 109.46529 * 181.38983 * 9 8 7 39 39 H 1.09006 * 109.46416 * 301.36500 * 9 8 7 40 40 H 1.08998 * 109.50212 * 178.68149 * 10 9 8 41 41 H 1.09000 * 109.49242 * 58.58298 * 10 9 8 42 42 H 1.08990 * 109.47049 * 58.20577 * 13 11 6 43 43 H 1.08996 * 109.46873 * 298.20842 * 13 11 6 44 44 H 0.97003 * 120.00346 * 5.29951 * 14 13 11 45 45 H 1.09002 * 109.46953 * 300.01024 * 17 15 14 46 46 H 1.09003 * 109.46776 * 60.00023 * 17 15 14 47 47 H 0.96998 * 119.99849 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 8 4.1534 0.3922 0.0006 6 7 4.2208 2.6097 0.0013 7 6 3.5050 3.8873 0.1202 8 6 3.9189 4.7944 -1.0429 9 6 5.4433 4.9276 -1.0632 10 6 6.0747 3.5500 -1.2769 11 6 5.6852 2.6287 -0.1165 12 1 6.1216 3.0007 0.8105 13 6 6.1961 1.2130 -0.3920 14 7 7.6521 1.2417 -0.5514 15 6 8.3131 0.1225 -0.9076 16 8 7.7026 -0.9082 -1.0967 17 6 9.8101 0.1534 -1.0777 18 16 10.3972 -1.4905 -1.5562 19 6 12.1257 -1.1732 -1.6833 20 1 12.5092 -0.1838 -1.4828 21 6 12.9945 -2.1951 -2.0403 22 7 12.5270 -3.4012 -2.2843 23 14 14.8271 -1.8589 -2.1744 24 1 15.4729 -2.1051 -0.8600 25 1 15.4221 -2.7588 -3.1948 26 1 15.0430 -0.4453 -2.5749 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6766 1.9562 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 2.4305 3.7092 0.0801 35 1 3.7615 4.3631 1.0667 36 1 3.5792 4.3590 -1.9826 37 1 3.4694 5.7790 -0.9140 38 1 5.7391 5.5924 -1.8748 39 1 5.7846 5.3398 -0.1135 40 1 7.1595 3.6488 -1.3146 41 1 5.7146 3.1263 -2.2144 42 1 5.7380 0.8327 -1.3049 43 1 5.9347 0.5635 0.4435 44 1 8.1404 2.0661 -0.4004 45 1 10.0729 0.8727 -1.8534 46 1 10.2766 0.4467 -0.1372 47 1 13.1342 -4.1153 -2.5341 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001061969318.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:21 Heat of formation + Delta-G solvation = -105.301536 kcal Electronic energy + Delta-G solvation = -25951.001444 eV Core-core repulsion = 22258.618885 eV Total energy + Delta-G solvation = -3692.382559 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.80580 -40.43195 -38.58740 -36.24796 -35.25790 -34.59251 -33.86442 -32.73488 -30.71728 -29.09606 -27.76705 -27.12966 -25.52194 -23.67612 -22.45553 -21.87818 -21.55271 -20.06177 -19.70452 -18.31152 -17.84991 -17.31853 -16.89069 -16.76731 -16.59688 -16.57166 -15.76871 -15.63541 -15.29143 -15.21687 -14.80232 -14.71135 -14.64455 -14.35474 -14.14217 -13.93387 -13.74758 -13.34580 -13.17594 -12.91689 -12.86970 -12.84257 -12.63431 -12.61112 -12.20205 -12.07311 -11.90865 -11.74823 -11.65449 -11.63769 -11.48765 -11.14951 -11.03499 -10.44067 -10.28143 -10.02384 -9.59252 -8.69082 -8.34934 -6.14202 1.24524 1.42493 1.44897 1.55539 1.58717 1.63677 1.84374 2.26678 2.41555 2.98862 3.31907 3.41358 3.68732 3.80114 3.88766 3.95372 4.01099 4.08574 4.10335 4.16059 4.25945 4.27954 4.46361 4.47157 4.55316 4.65155 4.68533 4.69888 4.77623 4.84257 4.90677 4.95025 5.02823 5.07274 5.16748 5.22902 5.25037 5.26174 5.38134 5.40925 5.44397 5.46777 5.59704 6.19354 6.38556 6.50193 7.05537 7.17625 7.28221 8.74594 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018400 B = 0.002402 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.380934 B =11652.777566 C =12986.412812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.114 4.114 3 C -0.128 4.128 4 C 0.495 3.505 5 O -0.577 6.577 6 N -0.608 5.608 7 C 0.102 3.898 8 C -0.134 4.134 9 C -0.116 4.116 10 C -0.131 4.131 11 C 0.142 3.858 12 H 0.097 0.903 13 C 0.140 3.860 14 N -0.714 5.714 15 C 0.530 3.470 16 O -0.569 6.569 17 C -0.125 4.125 18 S -0.159 6.159 19 C -0.544 4.544 20 H 0.085 0.915 21 C 0.010 3.990 22 N -0.913 5.913 23 Si 1.003 2.997 24 H -0.267 1.267 25 H -0.278 1.278 26 H -0.256 1.256 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.041 0.959 31 H 0.048 0.952 32 H 0.123 0.877 33 H 0.116 0.884 34 H 0.111 0.889 35 H 0.089 0.911 36 H 0.058 0.942 37 H 0.102 0.898 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.049 0.951 42 H 0.039 0.961 43 H 0.065 0.935 44 H 0.413 0.587 45 H 0.113 0.887 46 H 0.112 0.888 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.696 25.751 6.462 35.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.153 4.153 3 C -0.167 4.167 4 C 0.285 3.715 5 O -0.456 6.456 6 N -0.342 5.342 7 C -0.019 4.019 8 C -0.172 4.172 9 C -0.154 4.154 10 C -0.169 4.169 11 C 0.038 3.962 12 H 0.114 0.886 13 C 0.017 3.983 14 N -0.371 5.371 15 C 0.315 3.685 16 O -0.447 6.447 17 C -0.276 4.276 18 S 0.069 5.931 19 C -0.692 4.692 20 H 0.103 0.897 21 C -0.195 4.195 22 N -0.550 5.550 23 Si 0.824 3.176 24 H -0.192 1.192 25 H -0.203 1.203 26 H -0.180 1.180 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.141 0.859 33 H 0.134 0.866 34 H 0.129 0.871 35 H 0.107 0.893 36 H 0.077 0.923 37 H 0.121 0.879 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.068 0.932 42 H 0.057 0.943 43 H 0.083 0.917 44 H 0.250 0.750 45 H 0.131 0.869 46 H 0.130 0.870 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -24.425 23.358 6.119 34.345 hybrid contribution 2.086 0.739 -0.069 2.214 sum -22.339 24.096 6.049 33.411 Atomic orbital electron populations 1.21736 0.93244 1.02237 1.02986 1.21286 0.97079 0.95410 1.01489 1.21785 0.88776 0.99616 1.06523 1.21679 0.92099 0.82889 0.74822 1.90834 1.70008 1.33588 1.51172 1.48310 1.05892 1.07373 1.72649 1.22132 0.98051 0.81776 0.99906 1.21945 0.96085 1.00917 0.98272 1.21524 0.95537 0.94935 1.03390 1.22014 1.01877 0.96286 0.96752 1.21398 0.81058 0.93481 1.00224 0.88559 1.21823 0.77981 0.97028 1.01499 1.45956 1.08472 1.12018 1.70668 1.20164 0.89037 0.83480 0.75776 1.90711 1.69970 1.33082 1.50946 1.23349 0.94276 1.03510 1.06446 1.85707 1.06946 1.10452 1.90044 1.23201 0.91767 0.99836 1.54395 0.89690 1.26206 1.05439 0.93976 0.93829 1.70205 1.37640 1.02366 1.44753 0.84897 0.75469 0.78852 0.78382 1.19244 1.20298 1.17987 0.91475 0.92925 0.91076 0.93960 0.93317 0.85896 0.86555 0.87083 0.89275 0.92337 0.87939 0.90698 0.90183 0.89850 0.93192 0.94283 0.91700 0.74961 0.86927 0.86996 0.92001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.91 71.98 0.71 -0.90 16 2 C -0.11 -2.01 5.22 30.59 0.16 -1.85 16 3 C -0.13 -1.59 4.05 29.85 0.12 -1.47 16 4 C 0.49 10.68 7.53 87.66 0.66 11.34 16 5 O -0.58 -19.46 11.53 -3.03 -0.03 -19.49 16 6 N -0.61 -9.58 2.97 -795.01 -2.36 -11.95 16 7 C 0.10 0.61 6.35 86.36 0.55 1.16 16 8 C -0.13 -0.72 6.08 30.67 0.19 -0.53 16 9 C -0.12 -0.91 5.88 30.62 0.18 -0.73 16 10 C -0.13 -1.89 5.10 30.67 0.16 -1.73 16 11 C 0.14 2.62 3.06 44.98 0.14 2.76 16 12 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 13 C 0.14 4.27 3.56 86.38 0.31 4.58 16 14 N -0.71 -21.46 5.22 -463.07 -2.42 -23.88 16 15 C 0.53 22.30 7.85 87.66 0.69 22.99 16 16 O -0.57 -30.57 15.86 -3.03 -0.05 -30.62 16 17 C -0.12 -5.29 6.16 71.24 0.44 -4.85 16 18 S -0.16 -9.31 20.57 -56.49 -1.16 -10.47 16 19 C -0.54 -32.03 9.50 67.95 0.65 -31.39 16 20 H 0.09 4.60 7.80 -2.91 -0.02 4.58 16 21 C 0.01 0.58 5.49 84.86 0.47 1.05 16 22 N -0.91 -57.87 13.22 21.65 0.29 -57.59 16 23 Si 1.00 44.57 29.55 68.60 2.03 46.60 16 24 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 25 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 26 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 27 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 29 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.04 0.97 8.10 -2.39 -0.02 0.95 16 31 H 0.05 1.05 8.10 -2.38 -0.02 1.03 16 32 H 0.12 0.77 7.72 -2.39 -0.02 0.75 16 33 H 0.12 0.91 7.91 -2.39 -0.02 0.89 16 34 H 0.11 0.17 5.93 -2.39 -0.01 0.16 16 35 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 36 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16 38 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.08 0.45 8.14 -2.38 -0.02 0.43 16 40 H 0.08 1.09 7.09 -2.39 -0.02 1.08 16 41 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.04 1.48 7.23 -2.39 -0.02 1.46 16 43 H 0.06 2.45 6.24 -2.39 -0.01 2.44 16 44 H 0.41 8.65 7.48 -92.71 -0.69 7.95 16 45 H 0.11 4.23 8.14 -2.39 -0.02 4.21 16 46 H 0.11 4.23 8.14 -2.39 -0.02 4.21 16 47 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 Total: -1.00 -90.18 385.62 1.96 -88.22 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: 0.26 Total: 18.77 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: 5.41 Total: 0.41 kcal Atomic # 7 Polarization: -88.92 SS G_CDS: -4.49 Total: -93.42 kcal Atomic # 8 Polarization: -50.03 SS G_CDS: -0.08 Total: -50.11 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Atomic # 16 Polarization: -9.31 SS G_CDS: -1.16 Total: -10.47 kcal Total: -90.18 1.96 -88.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001061969318.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.084 kcal (2) G-P(sol) polarization free energy of solvation -90.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds