Wall clock time and date at job start Tue Mar 31 2020 15:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46671 * 2 1 4 4 C 1.50693 * 109.47379 * 120.00304 * 2 1 3 5 5 O 1.21284 * 120.00125 * 350.28500 * 4 2 1 6 6 N 1.34769 * 120.00086 * 170.29234 * 4 2 1 7 7 C 1.46928 * 120.63130 * 5.70798 * 6 4 2 8 8 C 1.53195 * 108.77379 * 233.58776 * 7 6 4 9 9 C 1.53040 * 109.31477 * 305.36029 * 8 7 6 10 10 C 1.53049 * 109.53307 * 61.36681 * 9 8 7 11 11 C 1.46925 * 120.63174 * 185.42692 * 6 4 2 12 12 H 1.09003 * 109.59272 * 246.19877 * 11 6 4 13 13 C 1.53000 * 109.58876 * 6.62530 * 11 6 4 14 14 N 1.46497 * 109.47235 * 286.37956 * 13 11 6 15 15 C 1.34780 * 120.00108 * 186.21169 * 14 13 11 16 16 O 1.21279 * 119.99830 * 0.02562 * 15 14 13 17 17 C 1.50701 * 119.99762 * 180.02562 * 15 14 13 18 18 S 1.80999 * 109.46877 * 180.02562 * 17 15 14 19 19 C 1.76203 * 100.00021 * 179.97438 * 18 17 15 20 20 H 1.08002 * 119.99640 * 0.02562 * 19 18 17 21 21 C 1.38799 * 120.00061 * 179.97438 * 19 18 17 22 22 N 1.31631 * 119.99812 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00174 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46640 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47293 * 119.99982 * 23 21 19 26 26 H 1.48497 * 109.47234 * 240.00073 * 23 21 19 27 27 H 1.08998 * 109.47361 * 60.00415 * 1 2 3 28 28 H 1.09007 * 109.46695 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46741 * 299.99416 * 1 2 3 30 30 H 1.09004 * 109.47118 * 240.00501 * 2 1 3 31 31 H 1.09004 * 109.46839 * 177.21337 * 3 2 1 32 32 H 1.08997 * 109.47518 * 297.21587 * 3 2 1 33 33 H 1.09001 * 109.46840 * 57.21395 * 3 2 1 34 34 H 1.09002 * 109.58708 * 353.37151 * 7 6 4 35 35 H 1.08993 * 109.58779 * 113.65694 * 7 6 4 36 36 H 1.08998 * 109.49965 * 65.31745 * 8 7 6 37 37 H 1.09003 * 109.49825 * 185.38127 * 8 7 6 38 38 H 1.08998 * 109.46365 * 181.38571 * 9 8 7 39 39 H 1.08999 * 109.46271 * 301.36527 * 9 8 7 40 40 H 1.08992 * 109.49912 * 58.58891 * 10 9 8 41 41 H 1.08998 * 109.49264 * 178.65483 * 10 9 8 42 42 H 1.09009 * 109.46765 * 46.37529 * 13 11 6 43 43 H 1.08998 * 109.47700 * 166.37577 * 13 11 6 44 44 H 0.97006 * 119.99956 * 6.22185 * 14 13 11 45 45 H 1.09006 * 109.47033 * 300.00002 * 17 15 14 46 46 H 1.09001 * 109.47360 * 60.00222 * 17 15 14 47 47 H 0.96994 * 119.99900 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2303 5 8 1.2586 -1.0154 2.1130 6 7 3.3417 -1.0068 1.3500 7 6 4.3103 -0.5354 0.3508 8 6 5.1070 -1.7364 -0.1684 9 6 5.7346 -2.4772 1.0146 10 6 4.6299 -2.9937 1.9393 11 6 3.8285 -1.8021 2.4854 12 1 4.4693 -1.1855 3.1157 13 6 2.6393 -2.3123 3.3017 14 7 2.0588 -1.2041 4.0639 15 6 1.0749 -1.4410 4.9542 16 8 0.6706 -2.5716 5.1246 17 6 0.4774 -0.3008 5.7379 18 16 -0.8089 -0.9361 6.8414 19 6 -1.3196 0.5642 7.6116 20 1 -0.8492 1.4977 7.3403 21 6 -2.3272 0.5463 8.5661 22 7 -2.9008 -0.5915 8.8963 23 14 -2.8691 2.1368 9.3821 24 1 -2.0740 3.2674 8.8392 25 1 -4.3099 2.3684 9.1071 26 1 -2.6545 2.0391 10.8482 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8934 -0.5138 -0.8901 31 1 3.1288 1.4430 0.0500 32 1 1.7179 1.9418 -0.9138 33 1 1.6363 1.9705 0.8640 34 1 3.7810 -0.0628 -0.4766 35 1 4.9878 0.1844 0.8099 36 1 4.4404 -2.4099 -0.7071 37 1 5.8930 -1.3892 -0.8391 38 1 6.3224 -3.3179 0.6462 39 1 6.3817 -1.7962 1.5675 40 1 3.9678 -3.6553 1.3808 41 1 5.0765 -3.5416 2.7689 42 1 1.8868 -2.7241 2.6290 43 1 2.9762 -3.0886 3.9886 44 1 2.3823 -0.2998 3.9278 45 1 1.2564 0.1818 6.3283 46 1 0.0413 0.4237 5.0501 47 1 -3.6051 -0.6040 9.5630 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001062011620.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:28 Heat of formation + Delta-G solvation = -54.190864 kcal Electronic energy + Delta-G solvation = -26953.902949 eV Core-core repulsion = 23263.736715 eV Total energy + Delta-G solvation = -3690.166234 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.10700 -38.56499 -37.76955 -35.48494 -33.84029 -32.95613 -32.32874 -31.69164 -29.15825 -27.40403 -26.69221 -25.40234 -24.71417 -23.79653 -21.96015 -20.87672 -19.98543 -19.05894 -17.78568 -17.22278 -16.41189 -15.94989 -15.77336 -15.50628 -15.06771 -14.99350 -14.71907 -14.44510 -14.17282 -14.09707 -13.84102 -13.46016 -13.24965 -12.94812 -12.86248 -12.57169 -12.44614 -12.40695 -12.31304 -12.05148 -11.62279 -11.51718 -11.46341 -11.30285 -11.24494 -11.05530 -10.99991 -10.94354 -10.90535 -10.66414 -9.68701 -9.34110 -8.98024 -8.97847 -8.87454 -8.20087 -8.07059 -6.35558 -6.11676 -3.79976 2.52252 2.67419 3.22803 3.27357 3.35176 3.44444 3.53089 3.96428 4.13727 4.30635 4.31244 4.42851 4.47274 4.61806 4.69665 4.74070 4.80415 4.84779 5.01267 5.09695 5.13847 5.22935 5.32058 5.35255 5.39026 5.43387 5.45405 5.49189 5.59228 5.62651 5.65705 5.70695 5.71314 5.84189 5.90294 5.92349 6.10788 6.12142 6.19781 6.34712 6.40288 7.02024 7.18256 7.69468 8.09557 8.11371 8.45602 9.01745 9.33416 10.95878 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018015 B = 0.002915 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.852836 B = 9603.801443 C =10463.800520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.113 4.113 3 C -0.151 4.151 4 C 0.500 3.500 5 O -0.493 6.493 6 N -0.616 5.616 7 C 0.104 3.896 8 C -0.137 4.137 9 C -0.118 4.118 10 C -0.128 4.128 11 C 0.136 3.864 12 H 0.077 0.923 13 C 0.136 3.864 14 N -0.702 5.702 15 C 0.537 3.463 16 O -0.531 6.531 17 C -0.148 4.148 18 S -0.062 6.062 19 C -0.532 4.532 20 H 0.071 0.929 21 C 0.072 3.928 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.063 0.937 44 H 0.390 0.610 45 H 0.082 0.918 46 H 0.085 0.915 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.017 1.707 -23.814 31.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.134 4.134 3 C -0.208 4.208 4 C 0.288 3.712 5 O -0.366 6.366 6 N -0.352 5.352 7 C -0.019 4.019 8 C -0.175 4.175 9 C -0.156 4.156 10 C -0.167 4.167 11 C 0.032 3.968 12 H 0.095 0.905 13 C 0.012 3.988 14 N -0.355 5.355 15 C 0.323 3.677 16 O -0.407 6.407 17 C -0.299 4.299 18 S 0.165 5.835 19 C -0.680 4.680 20 H 0.089 0.911 21 C -0.137 4.137 22 N -0.504 5.504 23 Si 0.744 3.256 24 H -0.197 1.197 25 H -0.206 1.206 26 H -0.206 1.206 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.107 0.893 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.110 0.890 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.081 0.919 44 H 0.223 0.777 45 H 0.101 0.899 46 H 0.104 0.896 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 18.762 -0.442 -22.936 29.635 hybrid contribution 0.414 2.808 0.068 2.839 sum 19.176 2.366 -22.868 29.938 Atomic orbital electron populations 1.21624 0.92231 1.02903 1.02381 1.21306 0.98473 0.97112 0.96528 1.21958 1.01278 0.94369 1.03194 1.20816 0.81804 0.79899 0.88728 1.91012 1.55448 1.50854 1.39290 1.48155 1.07007 1.54282 1.25754 1.21899 0.91775 0.96274 0.91956 1.21950 0.99791 0.97679 0.98121 1.21501 0.97507 1.00245 0.96353 1.21971 0.97545 0.97079 1.00056 1.21609 0.95705 0.92428 0.87032 0.90529 1.21288 0.93290 0.89949 0.94261 1.45684 1.39061 1.09785 1.40945 1.20003 0.78721 0.90032 0.78929 1.90656 1.60063 1.23591 1.66345 1.23471 1.04003 1.00056 1.02331 1.85358 1.40116 1.12890 1.45148 1.22931 1.24153 0.94286 1.26647 0.91068 1.24987 0.95429 0.97242 0.96045 1.70040 1.24301 1.25067 1.30994 0.86134 0.78439 0.82076 0.78936 1.19682 1.20633 1.20633 0.92279 0.92121 0.91357 0.89306 0.91846 0.91529 0.91733 0.89029 0.91341 0.91379 0.90733 0.91435 0.91656 0.91037 0.90283 0.90249 0.91893 0.77736 0.89942 0.89643 0.92371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.33 8.54 37.16 0.32 -1.02 16 2 C -0.11 -0.93 2.41 -91.77 -0.22 -1.15 16 3 C -0.15 -0.98 8.76 37.16 0.33 -0.65 16 4 C 0.50 5.46 6.62 -10.99 -0.07 5.39 16 5 O -0.49 -7.62 9.74 5.55 0.05 -7.57 16 6 N -0.62 -5.17 2.97 -164.97 -0.49 -5.66 16 7 C 0.10 0.53 5.16 -3.71 -0.02 0.51 16 8 C -0.14 -0.61 6.08 -26.61 -0.16 -0.77 16 9 C -0.12 -0.61 5.88 -26.69 -0.16 -0.76 16 10 C -0.13 -0.91 5.36 -26.38 -0.14 -1.05 16 11 C 0.14 1.25 2.92 -67.37 -0.20 1.05 16 12 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 13 C 0.14 1.89 4.33 -4.04 -0.02 1.88 16 14 N -0.70 -11.39 3.18 -60.29 -0.19 -11.58 16 15 C 0.54 11.59 7.62 -10.98 -0.08 11.50 16 16 O -0.53 -13.59 15.85 5.56 0.09 -13.50 16 17 C -0.15 -3.37 6.16 36.01 0.22 -3.15 16 18 S -0.06 -1.80 20.57 -107.50 -2.21 -4.01 16 19 C -0.53 -15.96 9.50 30.94 0.29 -15.66 16 20 H 0.07 2.04 7.80 -52.49 -0.41 1.63 16 21 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 22 N -0.87 -27.20 13.22 55.49 0.73 -26.46 16 23 Si 0.92 22.23 29.55 -169.99 -5.02 17.20 16 24 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 29 H 0.07 0.83 7.99 -51.93 -0.42 0.42 16 30 H 0.09 0.57 7.44 -51.93 -0.39 0.18 16 31 H 0.06 0.32 5.55 -51.93 -0.29 0.03 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.09 0.37 4.55 -51.93 -0.24 0.13 16 35 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 38 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.08 1.30 6.34 -51.92 -0.33 0.98 16 43 H 0.06 0.91 8.07 -51.93 -0.42 0.49 16 44 H 0.39 5.52 8.02 -40.82 -0.33 5.19 16 45 H 0.08 1.73 8.14 -51.91 -0.42 1.31 16 46 H 0.09 1.87 8.14 -51.92 -0.42 1.45 16 47 H 0.27 7.71 8.31 -40.82 -0.34 7.38 16 LS Contribution 379.28 15.07 5.72 5.72 Total: -1.00 -37.62 379.28 -9.20 -46.82 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -7.86 Total: 0.89 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -0.01 Total: -1.84 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: 0.05 Total: -43.70 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: 0.14 Total: -21.07 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Atomic # 16 Polarization: -1.80 SS G_CDS: -2.21 Total: -4.01 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -37.62 -9.20 -46.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062011620.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.371 kcal (2) G-P(sol) polarization free energy of solvation -37.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds