Wall clock time and date at job start Tue Mar 31 2020 15:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46671 * 2 1 4 4 C 1.50693 * 109.47379 * 120.00304 * 2 1 3 5 5 O 1.21284 * 120.00125 * 350.28500 * 4 2 1 6 6 N 1.34769 * 120.00086 * 170.29234 * 4 2 1 7 7 C 1.46928 * 120.63130 * 5.70798 * 6 4 2 8 8 C 1.53195 * 108.77379 * 233.58776 * 7 6 4 9 9 C 1.53040 * 109.31477 * 305.36029 * 8 7 6 10 10 C 1.53049 * 109.53307 * 61.36681 * 9 8 7 11 11 C 1.46925 * 120.63174 * 185.42692 * 6 4 2 12 12 H 1.09003 * 109.59272 * 246.19877 * 11 6 4 13 13 C 1.53000 * 109.58876 * 6.62530 * 11 6 4 14 14 N 1.46497 * 109.47235 * 286.37956 * 13 11 6 15 15 C 1.34780 * 120.00108 * 186.21169 * 14 13 11 16 16 O 1.21279 * 119.99830 * 0.02562 * 15 14 13 17 17 C 1.50701 * 119.99762 * 180.02562 * 15 14 13 18 18 S 1.80999 * 109.46877 * 180.02562 * 17 15 14 19 19 C 1.76203 * 100.00021 * 179.97438 * 18 17 15 20 20 H 1.08002 * 119.99640 * 0.02562 * 19 18 17 21 21 C 1.38799 * 120.00061 * 179.97438 * 19 18 17 22 22 N 1.31631 * 119.99812 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00174 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46640 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47293 * 119.99982 * 23 21 19 26 26 H 1.48497 * 109.47234 * 240.00073 * 23 21 19 27 27 H 1.08998 * 109.47361 * 60.00415 * 1 2 3 28 28 H 1.09007 * 109.46695 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46741 * 299.99416 * 1 2 3 30 30 H 1.09004 * 109.47118 * 240.00501 * 2 1 3 31 31 H 1.09004 * 109.46839 * 177.21337 * 3 2 1 32 32 H 1.08997 * 109.47518 * 297.21587 * 3 2 1 33 33 H 1.09001 * 109.46840 * 57.21395 * 3 2 1 34 34 H 1.09002 * 109.58708 * 353.37151 * 7 6 4 35 35 H 1.08993 * 109.58779 * 113.65694 * 7 6 4 36 36 H 1.08998 * 109.49965 * 65.31745 * 8 7 6 37 37 H 1.09003 * 109.49825 * 185.38127 * 8 7 6 38 38 H 1.08998 * 109.46365 * 181.38571 * 9 8 7 39 39 H 1.08999 * 109.46271 * 301.36527 * 9 8 7 40 40 H 1.08992 * 109.49912 * 58.58891 * 10 9 8 41 41 H 1.08998 * 109.49264 * 178.65483 * 10 9 8 42 42 H 1.09009 * 109.46765 * 46.37529 * 13 11 6 43 43 H 1.08998 * 109.47700 * 166.37577 * 13 11 6 44 44 H 0.97006 * 119.99956 * 6.22185 * 14 13 11 45 45 H 1.09006 * 109.47033 * 300.00002 * 17 15 14 46 46 H 1.09001 * 109.47360 * 60.00222 * 17 15 14 47 47 H 0.96994 * 119.99900 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2303 5 8 1.2586 -1.0154 2.1130 6 7 3.3417 -1.0068 1.3500 7 6 4.3103 -0.5354 0.3508 8 6 5.1070 -1.7364 -0.1684 9 6 5.7346 -2.4772 1.0146 10 6 4.6299 -2.9937 1.9393 11 6 3.8285 -1.8021 2.4854 12 1 4.4693 -1.1855 3.1157 13 6 2.6393 -2.3123 3.3017 14 7 2.0588 -1.2041 4.0639 15 6 1.0749 -1.4410 4.9542 16 8 0.6706 -2.5716 5.1246 17 6 0.4774 -0.3008 5.7379 18 16 -0.8089 -0.9361 6.8414 19 6 -1.3196 0.5642 7.6116 20 1 -0.8492 1.4977 7.3403 21 6 -2.3272 0.5463 8.5661 22 7 -2.9008 -0.5915 8.8963 23 14 -2.8691 2.1368 9.3821 24 1 -2.0740 3.2674 8.8392 25 1 -4.3099 2.3684 9.1071 26 1 -2.6545 2.0391 10.8482 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8934 -0.5138 -0.8901 31 1 3.1288 1.4430 0.0500 32 1 1.7179 1.9418 -0.9138 33 1 1.6363 1.9705 0.8640 34 1 3.7810 -0.0628 -0.4766 35 1 4.9878 0.1844 0.8099 36 1 4.4404 -2.4099 -0.7071 37 1 5.8930 -1.3892 -0.8391 38 1 6.3224 -3.3179 0.6462 39 1 6.3817 -1.7962 1.5675 40 1 3.9678 -3.6553 1.3808 41 1 5.0765 -3.5416 2.7689 42 1 1.8868 -2.7241 2.6290 43 1 2.9762 -3.0886 3.9886 44 1 2.3823 -0.2998 3.9278 45 1 1.2564 0.1818 6.3283 46 1 0.0413 0.4237 5.0501 47 1 -3.6051 -0.6040 9.5630 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001062011620.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:27 Heat of formation + Delta-G solvation = -79.864549 kcal Electronic energy + Delta-G solvation = -26955.016243 eV Core-core repulsion = 23263.736715 eV Total energy + Delta-G solvation = -3691.279528 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.95890 -40.18252 -38.47712 -36.47598 -34.95777 -34.60084 -33.60048 -32.68058 -30.73512 -28.06614 -27.83889 -27.43212 -25.59340 -24.41943 -22.72998 -21.84700 -21.19594 -20.01057 -19.66002 -18.21911 -17.57119 -17.19727 -17.04233 -16.89725 -16.51493 -16.24506 -15.80657 -15.54939 -15.34108 -14.94186 -14.69768 -14.65065 -14.48815 -14.16516 -14.06378 -13.72793 -13.53270 -13.28332 -13.17717 -13.03453 -12.99735 -12.91341 -12.73758 -12.59991 -12.22126 -12.11993 -11.98180 -11.82265 -11.72779 -11.58514 -11.42365 -11.17131 -10.88464 -10.29435 -10.14656 -9.85056 -9.41573 -8.68352 -8.35810 -6.14549 1.26163 1.40160 1.45889 1.57653 1.65415 1.82361 1.98160 2.25935 2.43316 2.97533 3.32743 3.41394 3.74192 3.84019 3.91543 3.97919 4.05648 4.09046 4.15194 4.19091 4.24421 4.29102 4.43303 4.45409 4.52843 4.64161 4.68140 4.75005 4.81779 4.88908 4.92006 4.95589 5.00201 5.03487 5.10377 5.20317 5.23825 5.32487 5.35437 5.39311 5.48109 5.58871 5.66389 6.18443 6.45897 6.60508 7.04373 7.30251 7.38584 8.74118 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018015 B = 0.002915 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.852836 B = 9603.801443 C =10463.800520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.106 4.106 3 C -0.145 4.145 4 C 0.493 3.507 5 O -0.552 6.552 6 N -0.609 5.609 7 C 0.097 3.903 8 C -0.134 4.134 9 C -0.115 4.115 10 C -0.124 4.124 11 C 0.143 3.857 12 H 0.093 0.907 13 C 0.139 3.861 14 N -0.672 5.672 15 C 0.534 3.466 16 O -0.581 6.581 17 C -0.122 4.122 18 S -0.151 6.151 19 C -0.547 4.547 20 H 0.080 0.920 21 C 0.011 3.989 22 N -0.912 5.912 23 Si 1.003 2.997 24 H -0.257 1.257 25 H -0.272 1.272 26 H -0.270 1.270 27 H 0.083 0.917 28 H 0.038 0.962 29 H 0.037 0.963 30 H 0.116 0.884 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.043 0.957 34 H 0.108 0.892 35 H 0.087 0.913 36 H 0.059 0.941 37 H 0.099 0.901 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.058 0.942 41 H 0.082 0.918 42 H 0.052 0.948 43 H 0.054 0.946 44 H 0.402 0.598 45 H 0.104 0.896 46 H 0.094 0.906 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.830 4.378 -25.816 34.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.127 4.127 3 C -0.202 4.202 4 C 0.282 3.718 5 O -0.430 6.430 6 N -0.343 5.343 7 C -0.024 4.024 8 C -0.172 4.172 9 C -0.152 4.152 10 C -0.163 4.163 11 C 0.039 3.961 12 H 0.111 0.889 13 C 0.015 3.985 14 N -0.323 5.323 15 C 0.319 3.681 16 O -0.461 6.461 17 C -0.273 4.273 18 S 0.077 5.923 19 C -0.694 4.694 20 H 0.098 0.902 21 C -0.193 4.193 22 N -0.548 5.548 23 Si 0.824 3.176 24 H -0.181 1.181 25 H -0.198 1.198 26 H -0.196 1.196 27 H 0.102 0.898 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.134 0.866 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.062 0.938 34 H 0.126 0.874 35 H 0.105 0.895 36 H 0.078 0.922 37 H 0.117 0.883 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.077 0.923 41 H 0.101 0.899 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.238 0.762 45 H 0.122 0.878 46 H 0.112 0.888 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 21.667 2.258 -25.007 33.165 hybrid contribution -0.372 1.923 0.557 2.036 sum 21.295 4.181 -24.450 32.692 Atomic orbital electron populations 1.21597 0.94037 1.01357 1.02026 1.21315 0.96912 0.98448 0.96065 1.21947 1.02463 0.92567 1.03249 1.21383 0.82122 0.79279 0.88970 1.90987 1.56962 1.53479 1.41532 1.48246 1.06904 1.53226 1.25971 1.22232 0.91452 0.97063 0.91630 1.21947 1.00139 0.97045 0.98032 1.21502 0.96669 1.00901 0.96144 1.21960 0.97800 0.95938 1.00606 1.21542 0.93612 0.93720 0.87197 0.88913 1.21343 0.94209 0.89163 0.93804 1.45456 1.36816 1.11219 1.38769 1.19849 0.79636 0.88833 0.79738 1.90631 1.62080 1.25143 1.68268 1.23283 1.02297 1.00385 1.01335 1.85546 1.43618 1.15550 1.47632 1.23225 1.24926 0.94052 1.27239 0.90234 1.26193 0.95063 1.01626 0.96427 1.70203 1.24921 1.27981 1.31716 0.84849 0.78158 0.76766 0.77783 1.18109 1.19765 1.19565 0.89840 0.94301 0.94370 0.86567 0.89732 0.89627 0.93783 0.87392 0.89520 0.92184 0.88271 0.90501 0.90603 0.92321 0.89928 0.93021 0.92821 0.76228 0.87762 0.88810 0.91926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.67 8.54 71.98 0.61 -2.05 16 2 C -0.11 -1.57 2.41 -11.54 -0.03 -1.60 16 3 C -0.15 -1.47 8.76 71.98 0.63 -0.84 16 4 C 0.49 10.46 6.62 87.66 0.58 11.04 16 5 O -0.55 -17.76 9.74 -3.04 -0.03 -17.79 16 6 N -0.61 -8.98 2.97 -794.23 -2.36 -11.34 16 7 C 0.10 0.61 5.16 86.36 0.45 1.05 16 8 C -0.13 -0.66 6.08 30.67 0.19 -0.47 16 9 C -0.11 -0.78 5.88 30.62 0.18 -0.60 16 10 C -0.12 -1.57 5.36 30.82 0.17 -1.41 16 11 C 0.14 2.43 2.92 45.12 0.13 2.56 16 12 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 13 C 0.14 3.96 4.33 86.38 0.37 4.34 16 14 N -0.67 -22.23 3.18 -463.05 -1.47 -23.70 16 15 C 0.53 23.96 7.62 87.66 0.67 24.62 16 16 O -0.58 -31.54 15.85 -3.03 -0.05 -31.59 16 17 C -0.12 -5.68 6.16 71.24 0.44 -5.24 16 18 S -0.15 -9.17 20.57 -56.49 -1.16 -10.33 16 19 C -0.55 -33.36 9.50 67.95 0.65 -32.72 16 20 H 0.08 4.55 7.80 -2.91 -0.02 4.53 16 21 C 0.01 0.68 5.49 84.86 0.47 1.15 16 22 N -0.91 -58.50 13.22 21.65 0.29 -58.22 16 23 Si 1.00 45.60 29.55 68.60 2.03 47.63 16 24 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 25 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 26 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 27 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.04 0.98 7.99 -2.39 -0.02 0.96 16 30 H 0.12 1.11 7.44 -2.39 -0.02 1.09 16 31 H 0.08 0.50 5.55 -2.39 -0.01 0.48 16 32 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.04 0.64 8.14 -2.39 -0.02 0.63 16 34 H 0.11 0.36 4.55 -2.39 -0.01 0.35 16 35 H 0.09 0.32 8.14 -2.39 -0.02 0.31 16 36 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.10 0.09 8.14 -2.39 -0.02 0.08 16 38 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.05 1.81 6.34 -2.38 -0.02 1.80 16 43 H 0.05 1.63 8.07 -2.39 -0.02 1.61 16 44 H 0.40 11.20 8.02 -92.70 -0.74 10.46 16 45 H 0.10 4.37 8.14 -2.39 -0.02 4.35 16 46 H 0.09 4.20 8.14 -2.39 -0.02 4.18 16 47 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 Total: -1.00 -87.89 379.28 2.96 -84.93 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: 0.22 Total: 20.57 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: 5.50 Total: -0.16 kcal Atomic # 7 Polarization: -89.71 SS G_CDS: -3.54 Total: -93.25 kcal Atomic # 8 Polarization: -49.30 SS G_CDS: -0.08 Total: -49.38 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Atomic # 16 Polarization: -9.17 SS G_CDS: -1.16 Total: -10.33 kcal Total: -87.89 2.96 -84.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062011620.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.066 kcal (2) G-P(sol) polarization free energy of solvation -87.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds