Wall clock time and date at job start Tue Mar 31 2020 15:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53008 * 109.47207 * 2 1 4 4 C 1.50692 * 109.47122 * 180.02562 * 3 2 1 5 5 O 1.21285 * 120.00488 * 0.02562 * 4 3 2 6 6 N 1.34786 * 120.00111 * 179.97438 * 4 3 2 7 7 C 1.46492 * 120.00046 * 180.02562 * 6 4 3 8 8 C 1.53005 * 109.46867 * 185.29774 * 7 6 4 9 9 H 1.09001 * 109.58213 * 298.48802 * 8 7 6 10 10 C 1.53195 * 109.58646 * 58.92019 * 8 7 6 11 11 C 1.53039 * 109.31236 * 174.42324 * 10 8 7 12 12 C 1.53045 * 109.53793 * 298.63481 * 11 10 8 13 13 C 1.53188 * 109.31361 * 61.36139 * 12 11 10 14 14 N 1.46924 * 108.77846 * 305.37001 * 13 12 11 15 15 C 1.34785 * 120.62766 * 233.58915 * 14 13 12 16 16 O 1.21276 * 119.99587 * 185.39198 * 15 14 13 17 17 C 1.50694 * 120.00043 * 5.38887 * 15 14 13 18 18 S 1.80997 * 109.47087 * 180.02562 * 17 15 14 19 19 C 1.76202 * 100.00145 * 179.97438 * 18 17 15 20 20 H 1.07995 * 119.99626 * 0.02562 * 19 18 17 21 21 C 1.38799 * 119.99999 * 180.02562 * 19 18 17 22 22 N 1.31630 * 119.99846 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00098 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46727 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47415 * 119.99483 * 23 21 19 26 26 H 1.48496 * 109.47008 * 240.00067 * 23 21 19 27 27 H 1.08996 * 109.47786 * 59.99856 * 1 2 3 28 28 H 1.08996 * 109.47128 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47130 * 299.99303 * 1 2 3 30 30 H 1.08997 * 109.47143 * 240.00271 * 2 1 3 31 31 H 1.09005 * 109.47521 * 120.00060 * 2 1 3 32 32 H 1.09003 * 109.46507 * 60.00316 * 3 2 1 33 33 H 1.08996 * 109.46865 * 300.00708 * 3 2 1 34 34 H 0.96998 * 119.98940 * 0.02562 * 6 4 3 35 35 H 1.09007 * 109.47482 * 305.29580 * 7 6 4 36 36 H 1.08998 * 109.47431 * 65.30130 * 7 6 4 37 37 H 1.09001 * 109.49610 * 294.37070 * 10 8 7 38 38 H 1.08994 * 109.49760 * 54.47101 * 10 8 7 39 39 H 1.08994 * 109.46025 * 178.60753 * 11 10 8 40 40 H 1.09007 * 109.45697 * 58.65018 * 11 10 8 41 41 H 1.09006 * 109.49041 * 301.41212 * 12 11 10 42 42 H 1.08992 * 109.52156 * 181.33570 * 12 11 10 43 43 H 1.09003 * 109.58820 * 185.57913 * 13 12 11 44 44 H 1.09000 * 109.58401 * 65.15911 * 13 12 11 45 45 H 1.08999 * 109.47429 * 300.00061 * 17 15 14 46 46 H 1.09000 * 109.47449 * 60.00301 * 17 15 14 47 47 H 0.97001 * 119.99821 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5469 1.4425 -0.0006 5 8 4.1534 0.3922 -0.0015 6 7 4.2208 2.6098 -0.0013 7 6 5.6858 2.6098 -0.0025 8 6 6.1959 4.0462 0.1302 9 1 5.8551 4.6350 -0.7214 10 6 5.6656 4.6615 1.4291 11 6 6.2895 6.0451 1.6252 12 6 7.8096 5.9095 1.7403 13 6 8.3641 5.3082 0.4451 14 7 7.6645 4.0453 0.1725 15 6 8.3569 2.9078 -0.0353 16 8 7.7745 1.8934 -0.3556 17 6 9.8547 2.8964 0.1303 18 16 10.4874 1.2364 -0.2162 19 6 12.2093 1.5047 0.0442 20 1 12.5661 2.4830 0.3305 21 6 13.1071 0.4588 -0.1187 22 7 12.6722 -0.7334 -0.4682 23 14 14.9325 0.7430 0.1580 24 1 15.1604 2.1598 0.5402 25 1 15.4128 -0.1469 1.2454 26 1 15.6753 0.4425 -1.0922 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8901 33 1 1.6765 1.9564 -0.8899 34 1 3.7357 3.4498 -0.0009 35 1 6.0499 2.0160 0.8361 36 1 6.0484 2.1803 -0.9363 37 1 4.5813 4.7564 1.3705 38 1 5.9304 4.0206 2.2699 39 1 5.8950 6.4955 2.5360 40 1 6.0450 6.6780 0.7720 41 1 8.0541 5.2567 2.5784 42 1 8.2516 6.8923 1.9037 43 1 9.4314 5.1177 0.5583 44 1 8.2002 6.0022 -0.3794 45 1 10.3024 3.6076 -0.5638 46 1 10.1094 3.1767 1.1524 47 1 13.2996 -1.4645 -0.5817 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001062017901.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:40 Heat of formation + Delta-G solvation = -79.517313 kcal Electronic energy + Delta-G solvation = -26104.855220 eV Core-core repulsion = 22413.590749 eV Total energy + Delta-G solvation = -3691.264471 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.58027 -39.39510 -37.28504 -35.18425 -34.39587 -32.94248 -32.41648 -31.75244 -29.08246 -28.49532 -26.26166 -25.43835 -24.61923 -22.56639 -21.62591 -21.14291 -20.33984 -18.99205 -17.73354 -17.16227 -16.61407 -16.24933 -15.91941 -15.43248 -15.08745 -14.79500 -14.62732 -14.58455 -14.22048 -14.02512 -13.80902 -13.69158 -13.42255 -13.25020 -13.01859 -12.57997 -12.52568 -12.23700 -11.97095 -11.90391 -11.79874 -11.37256 -11.30015 -11.18328 -11.06444 -11.02434 -10.93990 -10.91549 -10.80197 -10.74323 -9.79735 -9.77924 -9.15354 -9.06204 -8.75307 -8.47792 -8.19751 -6.48401 -6.20190 -3.90816 2.73308 2.75355 2.99381 3.19791 3.22238 3.30298 3.36160 3.63892 4.20769 4.41011 4.53091 4.59620 4.66412 4.74014 4.79594 4.81987 4.95666 5.03603 5.07826 5.14797 5.23668 5.26322 5.27591 5.39632 5.41985 5.49469 5.54368 5.56769 5.59249 5.73467 5.79124 5.81371 5.83397 5.85426 5.97297 6.02551 6.10411 6.15881 6.18661 6.27814 6.47140 6.70496 7.47893 7.54796 7.60833 8.33458 8.36373 8.53304 9.24916 10.87166 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012538 B = 0.002951 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.635990 B = 9486.437970 C =11518.727597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.139 4.139 4 C 0.505 3.495 5 O -0.528 6.528 6 N -0.738 5.738 7 C 0.121 3.879 8 C 0.140 3.860 9 H 0.073 0.927 10 C -0.132 4.132 11 C -0.118 4.118 12 C -0.138 4.138 13 C 0.109 3.891 14 N -0.615 5.615 15 C 0.532 3.468 16 O -0.501 6.501 17 C -0.151 4.151 18 S -0.058 6.058 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.866 5.866 23 Si 0.918 3.082 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.390 0.610 35 H 0.080 0.920 36 H 0.103 0.897 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.092 0.908 44 H 0.068 0.932 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.813 16.041 3.233 26.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.179 4.179 4 C 0.291 3.709 5 O -0.403 6.403 6 N -0.393 5.393 7 C -0.001 4.001 8 C 0.036 3.964 9 H 0.091 0.909 10 C -0.171 4.171 11 C -0.155 4.155 12 C -0.176 4.176 13 C -0.014 4.014 14 N -0.353 5.353 15 C 0.320 3.680 16 O -0.375 6.375 17 C -0.301 4.301 18 S 0.168 5.832 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.501 5.501 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.224 0.776 35 H 0.098 0.902 36 H 0.121 0.879 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.110 0.890 44 H 0.086 0.914 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -21.132 13.553 2.706 25.251 hybrid contribution 1.698 2.023 0.635 2.716 sum -19.435 15.576 3.341 25.129 Atomic orbital electron populations 1.21789 0.95647 1.01918 1.01557 1.21290 0.95022 0.94830 1.03829 1.21713 0.92137 1.00121 1.03943 1.20688 0.90067 0.83744 0.76438 1.90785 1.70348 1.31130 1.48076 1.46375 1.08295 1.08280 1.76354 1.22271 0.77218 0.94425 1.06184 1.21348 0.80650 0.96935 0.97504 0.90947 1.22027 0.99925 0.97031 0.98085 1.21499 0.95456 0.96625 1.01944 1.21944 0.95954 1.01412 0.98273 1.21739 0.97725 0.84990 0.96927 1.48124 1.05038 1.09030 1.73082 1.20448 0.89456 0.82304 0.75778 1.90749 1.69089 1.32662 1.44988 1.23574 0.93553 1.08277 1.04726 1.85494 1.04665 1.02737 1.90267 1.22891 0.91867 0.99208 1.54373 0.90932 1.24997 0.99546 0.94455 0.94629 1.70032 1.35157 1.00861 1.44094 0.86123 0.82994 0.78366 0.78043 1.19642 1.20570 1.20575 0.92788 0.92437 0.92825 0.91107 0.91165 0.89263 0.89211 0.77650 0.90169 0.87924 0.91073 0.91079 0.91661 0.91793 0.91189 0.90666 0.88953 0.91419 0.89324 0.89277 0.92223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.15 0.37 -0.68 16 2 C -0.11 -1.07 5.22 -26.73 -0.14 -1.21 16 3 C -0.14 -1.18 5.70 -27.88 -0.16 -1.34 16 4 C 0.50 6.67 7.83 -10.99 -0.09 6.59 16 5 O -0.53 -10.01 15.98 5.55 0.09 -9.93 16 6 N -0.74 -8.27 5.22 -60.30 -0.31 -8.58 16 7 C 0.12 1.78 3.56 -4.04 -0.01 1.77 16 8 C 0.14 1.59 3.06 -67.60 -0.21 1.38 16 9 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 10 C -0.13 -1.15 5.10 -26.61 -0.14 -1.29 16 11 C -0.12 -0.85 5.88 -26.69 -0.16 -1.01 16 12 C -0.14 -1.14 6.08 -26.61 -0.16 -1.30 16 13 C 0.11 1.12 6.35 -3.71 -0.02 1.09 16 14 N -0.62 -8.33 2.97 -165.22 -0.49 -8.82 16 15 C 0.53 9.88 7.55 -10.98 -0.08 9.80 16 16 O -0.50 -11.16 11.41 5.56 0.06 -11.09 16 17 C -0.15 -3.03 4.51 36.00 0.16 -2.87 16 18 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 19 C -0.54 -15.29 9.50 30.94 0.29 -14.99 16 20 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.43 13.22 55.49 0.73 -25.69 16 23 Si 0.92 21.53 29.55 -169.99 -5.02 16.51 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 31 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.39 2.81 7.48 -40.82 -0.31 2.50 16 35 H 0.08 1.48 7.23 -51.92 -0.38 1.10 16 36 H 0.10 1.91 6.24 -51.93 -0.32 1.58 16 37 H 0.07 0.47 7.10 -51.93 -0.37 0.10 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.41 8.14 -51.92 -0.42 -0.02 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.09 0.99 5.93 -51.93 -0.31 0.68 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.09 1.64 7.72 -51.92 -0.40 1.24 16 46 H 0.09 1.67 7.91 -51.92 -0.41 1.26 16 47 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 385.62 15.07 5.81 5.81 Total: -1.00 -36.69 385.62 -9.73 -46.43 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -7.95 Total: 1.23 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -0.44 Total: -2.05 kcal Atomic # 7 Polarization: -43.03 SS G_CDS: -0.07 Total: -43.10 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: 0.15 Total: -21.02 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.69 -9.73 -46.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062017901.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.092 kcal (2) G-P(sol) polarization free energy of solvation -36.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds