Wall clock time and date at job start Tue Mar 31 2020 15:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53008 * 109.47207 * 2 1 4 4 C 1.50692 * 109.47122 * 180.02562 * 3 2 1 5 5 O 1.21285 * 120.00488 * 0.02562 * 4 3 2 6 6 N 1.34786 * 120.00111 * 179.97438 * 4 3 2 7 7 C 1.46492 * 120.00046 * 180.02562 * 6 4 3 8 8 C 1.53005 * 109.46867 * 185.29774 * 7 6 4 9 9 H 1.09001 * 109.58213 * 298.48802 * 8 7 6 10 10 C 1.53195 * 109.58646 * 58.92019 * 8 7 6 11 11 C 1.53039 * 109.31236 * 174.42324 * 10 8 7 12 12 C 1.53045 * 109.53793 * 298.63481 * 11 10 8 13 13 C 1.53188 * 109.31361 * 61.36139 * 12 11 10 14 14 N 1.46924 * 108.77846 * 305.37001 * 13 12 11 15 15 C 1.34785 * 120.62766 * 233.58915 * 14 13 12 16 16 O 1.21276 * 119.99587 * 185.39198 * 15 14 13 17 17 C 1.50694 * 120.00043 * 5.38887 * 15 14 13 18 18 S 1.80997 * 109.47087 * 180.02562 * 17 15 14 19 19 C 1.76202 * 100.00145 * 179.97438 * 18 17 15 20 20 H 1.07995 * 119.99626 * 0.02562 * 19 18 17 21 21 C 1.38799 * 119.99999 * 180.02562 * 19 18 17 22 22 N 1.31630 * 119.99846 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00098 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46727 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47415 * 119.99483 * 23 21 19 26 26 H 1.48496 * 109.47008 * 240.00067 * 23 21 19 27 27 H 1.08996 * 109.47786 * 59.99856 * 1 2 3 28 28 H 1.08996 * 109.47128 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47130 * 299.99303 * 1 2 3 30 30 H 1.08997 * 109.47143 * 240.00271 * 2 1 3 31 31 H 1.09005 * 109.47521 * 120.00060 * 2 1 3 32 32 H 1.09003 * 109.46507 * 60.00316 * 3 2 1 33 33 H 1.08996 * 109.46865 * 300.00708 * 3 2 1 34 34 H 0.96998 * 119.98940 * 0.02562 * 6 4 3 35 35 H 1.09007 * 109.47482 * 305.29580 * 7 6 4 36 36 H 1.08998 * 109.47431 * 65.30130 * 7 6 4 37 37 H 1.09001 * 109.49610 * 294.37070 * 10 8 7 38 38 H 1.08994 * 109.49760 * 54.47101 * 10 8 7 39 39 H 1.08994 * 109.46025 * 178.60753 * 11 10 8 40 40 H 1.09007 * 109.45697 * 58.65018 * 11 10 8 41 41 H 1.09006 * 109.49041 * 301.41212 * 12 11 10 42 42 H 1.08992 * 109.52156 * 181.33570 * 12 11 10 43 43 H 1.09003 * 109.58820 * 185.57913 * 13 12 11 44 44 H 1.09000 * 109.58401 * 65.15911 * 13 12 11 45 45 H 1.08999 * 109.47429 * 300.00061 * 17 15 14 46 46 H 1.09000 * 109.47449 * 60.00301 * 17 15 14 47 47 H 0.97001 * 119.99821 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5469 1.4425 -0.0006 5 8 4.1534 0.3922 -0.0015 6 7 4.2208 2.6098 -0.0013 7 6 5.6858 2.6098 -0.0025 8 6 6.1959 4.0462 0.1302 9 1 5.8551 4.6350 -0.7214 10 6 5.6656 4.6615 1.4291 11 6 6.2895 6.0451 1.6252 12 6 7.8096 5.9095 1.7403 13 6 8.3641 5.3082 0.4451 14 7 7.6645 4.0453 0.1725 15 6 8.3569 2.9078 -0.0353 16 8 7.7745 1.8934 -0.3556 17 6 9.8547 2.8964 0.1303 18 16 10.4874 1.2364 -0.2162 19 6 12.2093 1.5047 0.0442 20 1 12.5661 2.4830 0.3305 21 6 13.1071 0.4588 -0.1187 22 7 12.6722 -0.7334 -0.4682 23 14 14.9325 0.7430 0.1580 24 1 15.1604 2.1598 0.5402 25 1 15.4128 -0.1469 1.2454 26 1 15.6753 0.4425 -1.0922 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8901 33 1 1.6765 1.9564 -0.8899 34 1 3.7357 3.4498 -0.0009 35 1 6.0499 2.0160 0.8361 36 1 6.0484 2.1803 -0.9363 37 1 4.5813 4.7564 1.3705 38 1 5.9304 4.0206 2.2699 39 1 5.8950 6.4955 2.5360 40 1 6.0450 6.6780 0.7720 41 1 8.0541 5.2567 2.5784 42 1 8.2516 6.8923 1.9037 43 1 9.4314 5.1177 0.5583 44 1 8.2002 6.0022 -0.3794 45 1 10.3024 3.6076 -0.5638 46 1 10.1094 3.1767 1.1524 47 1 13.2996 -1.4645 -0.5817 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001062017901.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:39 Heat of formation + Delta-G solvation = -105.829428 kcal Electronic energy + Delta-G solvation = -26105.996199 eV Core-core repulsion = 22413.590749 eV Total energy + Delta-G solvation = -3692.405450 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.76500 -40.54656 -38.45810 -36.23709 -35.25690 -34.61028 -33.97732 -32.74285 -30.50550 -29.30283 -27.75430 -27.12006 -25.52887 -23.47135 -22.53151 -22.09058 -21.30889 -20.33349 -19.47467 -18.42312 -17.78593 -17.37790 -16.91697 -16.88205 -16.70620 -16.25508 -15.84106 -15.59725 -15.33392 -15.10461 -14.90573 -14.75611 -14.50925 -14.30585 -14.25909 -13.97832 -13.57018 -13.42137 -13.17320 -12.98736 -12.93127 -12.76495 -12.66343 -12.60412 -12.18337 -12.03043 -11.96207 -11.71820 -11.65670 -11.63444 -11.53481 -11.18064 -10.95539 -10.45019 -10.26527 -10.02423 -9.60806 -8.70084 -8.36441 -6.15464 1.22516 1.39885 1.42670 1.52327 1.55304 1.69785 1.88724 2.25066 2.42068 2.97598 3.22736 3.49020 3.71462 3.82813 3.85006 3.93273 4.03287 4.07269 4.12237 4.15350 4.22977 4.26574 4.40961 4.48172 4.57568 4.65610 4.71889 4.74048 4.74848 4.87875 4.92176 4.97178 5.05263 5.08653 5.16666 5.23876 5.24793 5.27731 5.39387 5.41215 5.47087 5.48570 5.62327 6.17677 6.24544 6.60621 7.04317 7.12851 7.36936 8.73147 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012538 B = 0.002951 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.635990 B = 9486.437970 C =11518.727597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.116 4.116 3 C -0.125 4.125 4 C 0.495 3.505 5 O -0.598 6.598 6 N -0.717 5.717 7 C 0.135 3.865 8 C 0.142 3.858 9 H 0.104 0.896 10 C -0.126 4.126 11 C -0.112 4.112 12 C -0.135 4.135 13 C 0.099 3.901 14 N -0.604 5.604 15 C 0.526 3.474 16 O -0.550 6.550 17 C -0.121 4.121 18 S -0.158 6.158 19 C -0.543 4.543 20 H 0.084 0.916 21 C 0.010 3.990 22 N -0.913 5.913 23 Si 1.002 2.998 24 H -0.254 1.254 25 H -0.274 1.274 26 H -0.273 1.273 27 H 0.068 0.932 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.044 0.956 31 H 0.046 0.954 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.416 0.584 35 H 0.032 0.968 36 H 0.057 0.943 37 H 0.102 0.898 38 H 0.046 0.954 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.051 0.949 42 H 0.102 0.898 43 H 0.085 0.915 44 H 0.097 0.903 45 H 0.108 0.892 46 H 0.103 0.897 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.151 20.866 3.928 30.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.154 4.154 3 C -0.165 4.165 4 C 0.284 3.716 5 O -0.479 6.479 6 N -0.373 5.373 7 C 0.012 3.988 8 C 0.039 3.961 9 H 0.122 0.878 10 C -0.164 4.164 11 C -0.149 4.149 12 C -0.173 4.173 13 C -0.022 4.022 14 N -0.339 5.339 15 C 0.314 3.686 16 O -0.428 6.428 17 C -0.272 4.272 18 S 0.069 5.931 19 C -0.690 4.690 20 H 0.102 0.898 21 C -0.194 4.194 22 N -0.550 5.550 23 Si 0.823 3.177 24 H -0.177 1.177 25 H -0.200 1.200 26 H -0.199 1.199 27 H 0.087 0.913 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.254 0.746 35 H 0.051 0.949 36 H 0.076 0.924 37 H 0.121 0.879 38 H 0.065 0.935 39 H 0.101 0.899 40 H 0.105 0.895 41 H 0.069 0.931 42 H 0.120 0.880 43 H 0.103 0.897 44 H 0.115 0.885 45 H 0.127 0.873 46 H 0.122 0.878 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -22.523 18.497 3.418 29.344 hybrid contribution 2.002 0.598 0.424 2.132 sum -20.521 19.095 3.842 28.293 Atomic orbital electron populations 1.21732 0.92975 1.02344 1.03051 1.21295 0.97227 0.95352 1.01520 1.21755 0.87717 0.99937 1.07057 1.21741 0.92233 0.82966 0.74677 1.90765 1.72118 1.33728 1.51248 1.46100 1.06865 1.09231 1.75101 1.21670 0.79209 0.96109 1.01860 1.21553 0.79067 0.94890 1.00615 0.87791 1.22023 1.01862 0.97513 0.95042 1.21513 0.94132 0.95453 1.03844 1.21953 0.97175 1.02080 0.96078 1.22111 0.97213 0.83586 0.99326 1.48129 1.06179 1.08606 1.70969 1.20243 0.88881 0.83282 0.76184 1.90782 1.69657 1.34868 1.47492 1.23372 0.94945 1.03076 1.05848 1.85730 1.06327 1.10089 1.90947 1.23213 0.91729 0.99851 1.54252 0.89798 1.26191 1.05355 0.93925 0.93947 1.70212 1.37209 1.02108 1.45435 0.84869 0.75611 0.79126 0.78107 1.17748 1.19992 1.19870 0.91280 0.92702 0.91198 0.93671 0.93556 0.85760 0.85936 0.74602 0.94919 0.92442 0.87942 0.93545 0.89865 0.89540 0.93059 0.87988 0.89687 0.88531 0.87349 0.87845 0.92030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.91 71.98 0.71 -1.01 16 2 C -0.12 -2.23 5.22 30.59 0.16 -2.07 16 3 C -0.13 -1.89 5.70 29.85 0.17 -1.72 16 4 C 0.50 13.42 7.83 87.65 0.69 14.11 16 5 O -0.60 -24.81 15.98 -3.04 -0.05 -24.86 16 6 N -0.72 -15.71 5.22 -463.06 -2.42 -18.13 16 7 C 0.14 4.20 3.56 86.38 0.31 4.51 16 8 C 0.14 3.01 3.06 44.98 0.14 3.15 16 9 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 10 C -0.13 -1.81 5.10 30.67 0.16 -1.66 16 11 C -0.11 -1.08 5.88 30.62 0.18 -0.90 16 12 C -0.13 -1.74 6.08 30.67 0.19 -1.55 16 13 C 0.10 1.74 6.35 86.36 0.55 2.29 16 14 N -0.60 -15.88 2.97 -795.02 -2.36 -18.24 16 15 C 0.53 20.42 7.55 87.65 0.66 21.08 16 16 O -0.55 -26.67 11.41 -3.02 -0.03 -26.71 16 17 C -0.12 -5.01 4.51 71.23 0.32 -4.69 16 18 S -0.16 -9.16 20.57 -56.49 -1.16 -10.32 16 19 C -0.54 -31.72 9.50 67.95 0.65 -31.08 16 20 H 0.08 4.53 7.80 -2.91 -0.02 4.50 16 21 C 0.01 0.60 5.49 84.86 0.47 1.06 16 22 N -0.91 -57.86 13.22 21.65 0.29 -57.57 16 23 Si 1.00 44.49 29.55 68.60 2.03 46.52 16 24 H -0.25 -10.43 7.11 99.48 0.71 -9.72 16 25 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 26 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 27 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.04 1.08 8.10 -2.39 -0.02 1.06 16 31 H 0.05 1.09 8.10 -2.38 -0.02 1.07 16 32 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.42 4.68 7.48 -92.71 -0.69 3.98 16 35 H 0.03 1.32 7.23 -2.38 -0.02 1.31 16 36 H 0.06 2.34 6.24 -2.39 -0.01 2.32 16 37 H 0.10 0.86 7.10 -2.39 -0.02 0.84 16 38 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 41 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 42 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.08 1.63 5.93 -2.39 -0.01 1.62 16 44 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.11 4.00 7.72 -2.40 -0.02 3.99 16 46 H 0.10 3.93 7.91 -2.39 -0.02 3.91 16 47 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -91.30 385.62 1.89 -89.41 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: 0.26 Total: 18.37 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: 5.34 Total: 1.53 kcal Atomic # 7 Polarization: -89.44 SS G_CDS: -4.49 Total: -93.94 kcal Atomic # 8 Polarization: -51.49 SS G_CDS: -0.08 Total: -51.57 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 16 Polarization: -9.16 SS G_CDS: -1.16 Total: -10.32 kcal Total: -91.30 1.89 -89.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062017901.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.419 kcal (2) G-P(sol) polarization free energy of solvation -91.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds