Wall clock time and date at job start Tue Mar 31 2020 15:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47242 * 2 1 4 4 H 1.08993 * 109.47266 * 305.00599 * 3 2 1 5 5 C 1.53006 * 109.46944 * 65.00291 * 3 2 1 6 6 C 1.50696 * 109.47258 * 184.99986 * 3 2 1 7 7 O 1.21285 * 119.99824 * 0.02562 * 6 3 2 8 8 N 1.34779 * 120.00041 * 180.02562 * 6 3 2 9 9 C 1.46500 * 119.99809 * 180.02562 * 8 6 3 10 10 C 1.52997 * 109.47188 * 174.95841 * 9 8 6 11 11 N 1.46499 * 112.90633 * 311.27587 * 10 9 8 12 12 C 1.34784 * 120.00029 * 285.02423 * 11 10 9 13 13 O 1.21284 * 119.99503 * 4.71199 * 12 11 10 14 14 C 1.50691 * 119.99992 * 184.71703 * 12 11 10 15 15 S 1.81006 * 109.46980 * 180.02562 * 14 12 11 16 16 C 1.76205 * 100.00128 * 179.97438 * 15 14 12 17 17 H 1.08002 * 119.99558 * 359.97438 * 16 15 14 18 18 C 1.38792 * 120.00136 * 179.97438 * 16 15 14 19 19 N 1.31635 * 119.99739 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00075 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47191 * 90.00175 * 20 18 16 22 22 H 1.48500 * 109.47028 * 209.99914 * 20 18 16 23 23 H 1.48491 * 109.47337 * 330.00008 * 20 18 16 24 24 C 1.53775 * 113.61665 * 180.02562 * 10 9 8 25 25 C 1.53784 * 87.08424 * 220.02106 * 24 10 9 26 26 C 1.53780 * 113.61326 * 82.52026 * 10 9 8 27 27 H 1.09006 * 109.47347 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46886 * 299.99767 * 1 2 3 29 29 H 1.08999 * 109.47442 * 59.99570 * 1 2 3 30 30 H 1.09004 * 109.46886 * 240.00233 * 2 1 3 31 31 H 1.08998 * 109.46918 * 120.00408 * 2 1 3 32 32 H 1.09003 * 109.46860 * 59.99964 * 5 3 2 33 33 H 1.08996 * 109.47364 * 179.97438 * 5 3 2 34 34 H 1.09002 * 109.46933 * 299.99890 * 5 3 2 35 35 H 0.96992 * 119.99969 * 359.97438 * 8 6 3 36 36 H 1.09001 * 109.47021 * 54.96005 * 9 8 6 37 37 H 1.08998 * 109.47429 * 294.95948 * 9 8 6 38 38 H 0.97006 * 120.00214 * 105.02941 * 11 10 9 39 39 H 1.09006 * 109.47033 * 299.99779 * 14 12 11 40 40 H 1.08993 * 109.47969 * 59.99958 * 14 12 11 41 41 H 0.97004 * 119.99707 * 179.97438 * 19 18 16 42 42 H 1.09006 * 113.61194 * 105.47255 * 24 10 9 43 43 H 1.08992 * 113.61544 * 334.57182 * 24 10 9 44 44 H 1.08995 * 113.61598 * 139.98300 * 25 24 10 45 45 H 1.08998 * 113.61197 * 270.88460 * 25 24 10 46 46 H 1.09000 * 113.61395 * 25.43531 * 26 10 9 47 47 H 1.08998 * 113.69634 * 254.54322 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 1.6353 2.1265 1.3074 6 6 3.5419 1.4443 -0.1238 7 8 4.1449 0.3951 -0.2046 8 7 4.2150 2.6118 -0.1448 9 6 5.6750 2.6135 -0.2657 10 6 6.1746 4.0541 -0.3914 11 7 5.4391 4.8272 -1.3951 12 6 5.6658 4.6167 -2.7070 13 8 6.4145 3.7296 -3.0582 14 6 4.9891 5.4837 -3.7372 15 16 5.4915 4.9557 -5.3940 16 6 4.5791 6.1038 -6.3708 17 1 3.9502 6.8399 -5.8922 18 6 4.6687 6.0622 -7.7552 19 7 5.4349 5.1647 -8.3385 20 14 3.7020 7.2798 -8.7908 21 1 4.5239 8.4948 -9.0223 22 1 3.3595 6.6580 -10.0951 23 1 2.4543 7.6546 -8.0783 24 6 7.7024 4.1668 -0.5251 25 6 7.6147 5.3895 0.4036 26 6 6.3181 4.7763 0.9587 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.0700 1.5874 2.1492 33 1 1.9990 3.1540 1.3077 34 1 0.5490 2.1252 1.3970 35 1 3.7326 3.4508 -0.0805 36 1 5.9668 2.0492 -1.1514 37 1 6.1134 2.1528 0.6195 38 1 4.7890 5.4907 -1.1157 39 1 3.9077 5.3888 -3.6383 40 1 5.2781 6.5234 -3.5836 41 1 5.4972 5.1354 -9.3061 42 1 8.0357 4.4082 -1.5345 43 1 8.2420 3.3258 -0.0899 44 1 8.4214 5.4412 1.1348 45 1 7.4612 6.3298 -0.1259 46 1 6.4792 4.1019 1.7997 47 1 5.5346 5.5098 1.1485 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001062570517.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:53 Heat of formation + Delta-G solvation = -72.644307 kcal Electronic energy + Delta-G solvation = -26206.983923 eV Core-core repulsion = 22516.017487 eV Total energy + Delta-G solvation = -3690.966435 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.77248 -39.66598 -37.81623 -35.62073 -34.54263 -33.05624 -32.45034 -30.30232 -29.24677 -27.72093 -25.98514 -25.53395 -25.41635 -23.10742 -21.68403 -20.80253 -19.92241 -19.14576 -17.89008 -17.45680 -16.39648 -16.37640 -15.81636 -15.58383 -15.39687 -14.82924 -14.73097 -14.54992 -14.39494 -14.10458 -13.75284 -13.44805 -13.38882 -13.10161 -12.71986 -12.54886 -12.46775 -12.41443 -12.14213 -11.90907 -11.82080 -11.67229 -11.11574 -11.09108 -11.06969 -11.04961 -10.94502 -10.87894 -10.78408 -10.51230 -9.84390 -9.75991 -9.39803 -9.09349 -9.04369 -8.95227 -8.26250 -6.52476 -6.23899 -3.94743 2.63309 2.87551 3.02701 3.12811 3.20370 3.25919 3.29361 3.62514 4.16906 4.18842 4.38815 4.49603 4.53945 4.62853 4.68867 4.69092 5.02859 5.08818 5.11337 5.14426 5.23753 5.25612 5.31842 5.40443 5.45080 5.51720 5.57674 5.63615 5.63948 5.67642 5.68004 5.81848 5.84672 5.89926 5.94627 6.02681 6.06236 6.09145 6.11020 6.16217 6.36614 6.67936 7.42944 7.56765 7.61927 8.19909 8.32510 8.56378 9.21382 10.83446 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009942 B = 0.003303 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2815.751173 B = 8475.158285 C =10417.195914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.105 4.105 3 C -0.113 4.113 4 H 0.098 0.902 5 C -0.143 4.143 6 C 0.515 3.485 7 O -0.540 6.540 8 N -0.721 5.721 9 C 0.121 3.879 10 C 0.143 3.857 11 N -0.721 5.721 12 C 0.535 3.465 13 O -0.505 6.505 14 C -0.154 4.154 15 S -0.057 6.057 16 C -0.537 4.537 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C -0.134 4.134 25 C -0.139 4.139 26 C -0.136 4.136 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.397 0.603 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.398 0.602 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.269 0.731 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.070 0.930 45 H 0.082 0.918 46 H 0.094 0.906 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.718 -1.027 23.497 24.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.143 4.143 3 C -0.134 4.134 4 H 0.116 0.884 5 C -0.201 4.201 6 C 0.302 3.698 7 O -0.417 6.417 8 N -0.373 5.373 9 C -0.003 4.003 10 C 0.055 3.945 11 N -0.376 5.376 12 C 0.322 3.678 13 O -0.378 6.378 14 C -0.304 4.304 15 S 0.169 5.831 16 C -0.685 4.685 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.207 1.207 23 H -0.197 1.197 24 C -0.173 4.173 25 C -0.176 4.176 26 C -0.174 4.174 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.230 0.770 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.233 0.767 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.078 0.922 42 H 0.106 0.894 43 H 0.108 0.892 44 H 0.089 0.911 45 H 0.101 0.899 46 H 0.112 0.888 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.926 -3.350 22.660 23.240 hybrid contribution -2.025 2.638 -0.226 3.333 sum -5.950 -0.712 22.434 23.220 Atomic orbital electron populations 1.21848 0.95504 1.01892 1.01864 1.21331 0.95306 0.94155 1.03517 1.21366 0.91941 0.99577 1.00527 0.88404 1.21813 1.02354 1.00009 0.95886 1.20673 0.89932 0.83551 0.75678 1.90703 1.70359 1.31429 1.49183 1.45823 1.07768 1.08574 1.75099 1.21681 0.79804 0.96116 1.02746 1.21462 0.93677 0.90204 0.89165 1.45707 1.44348 1.42375 1.05144 1.20291 0.81415 0.84088 0.82039 1.90714 1.35747 1.31252 1.80052 1.23535 1.03220 1.01938 1.01727 1.85443 1.61723 1.45974 0.89931 1.22859 1.32254 1.19819 0.93566 0.90982 1.24990 0.95516 0.96130 0.96927 1.70021 1.36550 1.33080 1.10548 0.86172 0.79785 0.80358 0.79197 1.20267 1.20730 1.19710 1.23152 0.93800 0.98381 1.01926 1.22828 0.97411 0.98325 0.99033 1.23262 0.98789 0.99814 0.95551 0.92491 0.92563 0.92550 0.90986 0.91456 0.92156 0.92348 0.91176 0.76952 0.89903 0.91079 0.76749 0.89430 0.89276 0.92156 0.89438 0.89166 0.91144 0.89945 0.88770 0.90942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.67 37.16 0.36 -0.81 16 2 C -0.11 -1.03 4.75 -26.73 -0.13 -1.16 16 3 C -0.11 -1.06 2.73 -91.77 -0.25 -1.31 16 4 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 5 C -0.14 -0.95 8.84 37.16 0.33 -0.62 16 6 C 0.52 6.58 7.15 -10.99 -0.08 6.50 16 7 O -0.54 -9.19 15.91 5.55 0.09 -9.10 16 8 N -0.72 -7.84 5.28 -60.30 -0.32 -8.16 16 9 C 0.12 1.49 5.09 -4.04 -0.02 1.47 16 10 C 0.14 1.50 0.64 -131.01 -0.08 1.42 16 11 N -0.72 -8.37 4.51 -46.86 -0.21 -8.58 16 12 C 0.54 9.25 7.36 -10.99 -0.08 9.17 16 13 O -0.50 -10.79 13.87 5.55 0.08 -10.71 16 14 C -0.15 -2.95 6.16 36.00 0.22 -2.73 16 15 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 16 C -0.54 -15.09 9.50 30.94 0.29 -14.79 16 17 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 18 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 19 N -0.87 -26.03 13.22 55.49 0.73 -25.30 16 20 Si 0.92 21.22 29.55 -169.99 -5.02 16.19 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 24 C -0.13 -1.52 6.88 -25.92 -0.18 -1.70 16 25 C -0.14 -1.19 7.99 -25.91 -0.21 -1.39 16 26 C -0.14 -0.99 7.39 -25.91 -0.19 -1.19 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.36 6.57 -51.93 -0.34 0.02 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.85 7.95 -51.93 -0.41 0.43 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.32 7.56 -51.93 -0.39 -0.08 16 34 H 0.07 0.39 6.57 -51.93 -0.34 0.05 16 35 H 0.40 3.29 7.54 -40.82 -0.31 2.98 16 36 H 0.08 1.37 7.63 -51.93 -0.40 0.97 16 37 H 0.07 0.80 7.94 -51.93 -0.41 0.39 16 38 H 0.40 3.37 8.75 -40.82 -0.36 3.02 16 39 H 0.09 1.55 8.14 -51.91 -0.42 1.13 16 40 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 41 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.09 1.29 6.75 -51.93 -0.35 0.94 16 43 H 0.09 0.93 8.10 -51.93 -0.42 0.51 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.09 0.61 7.96 -51.93 -0.41 0.19 16 47 H 0.07 0.43 8.13 -51.93 -0.42 0.00 16 LS Contribution 394.73 15.07 5.95 5.95 Total: -1.00 -35.73 394.73 -8.94 -44.67 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -7.92 Total: 3.92 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -0.11 Total: -5.14 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: 0.20 Total: -42.04 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: 0.17 Total: -19.82 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.73 -8.94 -44.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062570517.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.973 kcal (2) G-P(sol) polarization free energy of solvation -35.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds