Wall clock time and date at job start Tue Mar 31 2020 15:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47242 * 2 1 4 4 H 1.08993 * 109.47266 * 305.00599 * 3 2 1 5 5 C 1.53006 * 109.46944 * 65.00291 * 3 2 1 6 6 C 1.50696 * 109.47258 * 184.99986 * 3 2 1 7 7 O 1.21285 * 119.99824 * 0.02562 * 6 3 2 8 8 N 1.34779 * 120.00041 * 180.02562 * 6 3 2 9 9 C 1.46500 * 119.99809 * 180.02562 * 8 6 3 10 10 C 1.52997 * 109.47188 * 174.95841 * 9 8 6 11 11 N 1.46499 * 112.90633 * 311.27587 * 10 9 8 12 12 C 1.34784 * 120.00029 * 285.02423 * 11 10 9 13 13 O 1.21284 * 119.99503 * 4.71199 * 12 11 10 14 14 C 1.50691 * 119.99992 * 184.71703 * 12 11 10 15 15 S 1.81006 * 109.46980 * 180.02562 * 14 12 11 16 16 C 1.76205 * 100.00128 * 179.97438 * 15 14 12 17 17 H 1.08002 * 119.99558 * 359.97438 * 16 15 14 18 18 C 1.38792 * 120.00136 * 179.97438 * 16 15 14 19 19 N 1.31635 * 119.99739 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00075 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47191 * 90.00175 * 20 18 16 22 22 H 1.48500 * 109.47028 * 209.99914 * 20 18 16 23 23 H 1.48491 * 109.47337 * 330.00008 * 20 18 16 24 24 C 1.53775 * 113.61665 * 180.02562 * 10 9 8 25 25 C 1.53784 * 87.08424 * 220.02106 * 24 10 9 26 26 C 1.53780 * 113.61326 * 82.52026 * 10 9 8 27 27 H 1.09006 * 109.47347 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46886 * 299.99767 * 1 2 3 29 29 H 1.08999 * 109.47442 * 59.99570 * 1 2 3 30 30 H 1.09004 * 109.46886 * 240.00233 * 2 1 3 31 31 H 1.08998 * 109.46918 * 120.00408 * 2 1 3 32 32 H 1.09003 * 109.46860 * 59.99964 * 5 3 2 33 33 H 1.08996 * 109.47364 * 179.97438 * 5 3 2 34 34 H 1.09002 * 109.46933 * 299.99890 * 5 3 2 35 35 H 0.96992 * 119.99969 * 359.97438 * 8 6 3 36 36 H 1.09001 * 109.47021 * 54.96005 * 9 8 6 37 37 H 1.08998 * 109.47429 * 294.95948 * 9 8 6 38 38 H 0.97006 * 120.00214 * 105.02941 * 11 10 9 39 39 H 1.09006 * 109.47033 * 299.99779 * 14 12 11 40 40 H 1.08993 * 109.47969 * 59.99958 * 14 12 11 41 41 H 0.97004 * 119.99707 * 179.97438 * 19 18 16 42 42 H 1.09006 * 113.61194 * 105.47255 * 24 10 9 43 43 H 1.08992 * 113.61544 * 334.57182 * 24 10 9 44 44 H 1.08995 * 113.61598 * 139.98300 * 25 24 10 45 45 H 1.08998 * 113.61197 * 270.88460 * 25 24 10 46 46 H 1.09000 * 113.61395 * 25.43531 * 26 10 9 47 47 H 1.08998 * 113.69634 * 254.54322 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 1.6353 2.1265 1.3074 6 6 3.5419 1.4443 -0.1238 7 8 4.1449 0.3951 -0.2046 8 7 4.2150 2.6118 -0.1448 9 6 5.6750 2.6135 -0.2657 10 6 6.1746 4.0541 -0.3914 11 7 5.4391 4.8272 -1.3951 12 6 5.6658 4.6167 -2.7070 13 8 6.4145 3.7296 -3.0582 14 6 4.9891 5.4837 -3.7372 15 16 5.4915 4.9557 -5.3940 16 6 4.5791 6.1038 -6.3708 17 1 3.9502 6.8399 -5.8922 18 6 4.6687 6.0622 -7.7552 19 7 5.4349 5.1647 -8.3385 20 14 3.7020 7.2798 -8.7908 21 1 4.5239 8.4948 -9.0223 22 1 3.3595 6.6580 -10.0951 23 1 2.4543 7.6546 -8.0783 24 6 7.7024 4.1668 -0.5251 25 6 7.6147 5.3895 0.4036 26 6 6.3181 4.7763 0.9587 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.0700 1.5874 2.1492 33 1 1.9990 3.1540 1.3077 34 1 0.5490 2.1252 1.3970 35 1 3.7326 3.4508 -0.0805 36 1 5.9668 2.0492 -1.1514 37 1 6.1134 2.1528 0.6195 38 1 4.7890 5.4907 -1.1157 39 1 3.9077 5.3888 -3.6383 40 1 5.2781 6.5234 -3.5836 41 1 5.4972 5.1354 -9.3061 42 1 8.0357 4.4082 -1.5345 43 1 8.2420 3.3258 -0.0899 44 1 8.4214 5.4412 1.1348 45 1 7.4612 6.3298 -0.1259 46 1 6.4792 4.1019 1.7997 47 1 5.5346 5.5098 1.1485 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001062570517.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:51 Heat of formation + Delta-G solvation = -98.401332 kcal Electronic energy + Delta-G solvation = -26208.100831 eV Core-core repulsion = 22516.017487 eV Total energy + Delta-G solvation = -3692.083344 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.80675 -40.71301 -39.04226 -36.40834 -35.57201 -34.59544 -34.29325 -31.12949 -30.55283 -28.69528 -27.66016 -26.75971 -26.11440 -23.99628 -22.65207 -21.89894 -20.86880 -20.16781 -19.82664 -18.37991 -17.81027 -17.36315 -16.88591 -16.82654 -16.61672 -16.45041 -16.01865 -15.64694 -15.51670 -15.18064 -14.85734 -14.64423 -14.42895 -14.30545 -13.99246 -13.62308 -13.43674 -13.24235 -13.16841 -12.98785 -12.90044 -12.68560 -12.58079 -12.57457 -12.49701 -11.92103 -11.87497 -11.72409 -11.70737 -11.61075 -11.37110 -11.14809 -10.80119 -10.77060 -10.26508 -10.10846 -10.07275 -8.66984 -8.35195 -6.13217 1.25888 1.41897 1.46286 1.56104 1.62834 1.63607 2.07778 2.26460 2.31376 2.99204 3.29632 3.38564 3.58377 3.71443 3.72814 3.86984 3.89194 3.98537 4.02545 4.30714 4.37698 4.41778 4.47185 4.51125 4.53162 4.59702 4.71466 4.76791 4.81005 4.86813 4.98723 5.03147 5.06085 5.10740 5.12461 5.13370 5.19690 5.25817 5.36152 5.40972 5.42566 5.49248 5.66974 6.18968 6.51265 6.53640 7.06202 7.24497 7.29117 8.73924 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009942 B = 0.003303 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2815.751173 B = 8475.158285 C =10417.195914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.106 4.106 3 C -0.108 4.108 4 H 0.107 0.893 5 C -0.137 4.137 6 C 0.506 3.494 7 O -0.592 6.592 8 N -0.708 5.708 9 C 0.127 3.873 10 C 0.138 3.862 11 N -0.692 5.692 12 C 0.537 3.463 13 O -0.554 6.554 14 C -0.128 4.128 15 S -0.155 6.155 16 C -0.545 4.545 17 H 0.084 0.916 18 C 0.012 3.988 19 N -0.913 5.913 20 Si 0.998 3.002 21 H -0.268 1.268 22 H -0.280 1.280 23 H -0.256 1.256 24 C -0.148 4.148 25 C -0.129 4.129 26 C -0.110 4.110 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.040 0.960 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.413 0.587 36 H 0.030 0.970 37 H 0.083 0.917 38 H 0.420 0.580 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.270 0.730 42 H 0.045 0.955 43 H 0.095 0.905 44 H 0.087 0.913 45 H 0.079 0.921 46 H 0.113 0.887 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.231 1.968 26.333 27.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.145 4.145 3 C -0.129 4.129 4 H 0.125 0.875 5 C -0.195 4.195 6 C 0.294 3.706 7 O -0.473 6.473 8 N -0.359 5.359 9 C 0.001 3.999 10 C 0.050 3.950 11 N -0.347 5.347 12 C 0.323 3.677 13 O -0.430 6.430 14 C -0.280 4.280 15 S 0.072 5.928 16 C -0.692 4.692 17 H 0.102 0.898 18 C -0.192 4.192 19 N -0.549 5.549 20 Si 0.820 3.180 21 H -0.193 1.193 22 H -0.205 1.205 23 H -0.180 1.180 24 C -0.187 4.187 25 C -0.167 4.167 26 C -0.147 4.147 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.106 0.894 35 H 0.250 0.750 36 H 0.048 0.952 37 H 0.101 0.899 38 H 0.258 0.742 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.079 0.921 42 H 0.064 0.936 43 H 0.113 0.887 44 H 0.106 0.894 45 H 0.098 0.902 46 H 0.131 0.869 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.479 -0.286 25.559 26.369 hybrid contribution -1.178 1.643 -1.018 2.263 sum -7.656 1.357 24.541 25.743 Atomic orbital electron populations 1.21812 0.93351 1.02431 1.02881 1.21320 0.97103 0.94355 1.01673 1.21413 0.89069 0.99649 1.02743 0.87487 1.21821 1.03540 1.00522 0.93572 1.21427 0.91487 0.83112 0.74533 1.90680 1.71661 1.33341 1.51577 1.45714 1.07230 1.08967 1.74014 1.21532 0.80769 0.96699 1.00851 1.21656 0.92841 0.89552 0.90929 1.45348 1.43986 1.42102 1.03288 1.20027 0.80797 0.83248 0.83593 1.90718 1.37941 1.33275 1.81116 1.23366 1.04433 1.03031 0.97122 1.85676 1.63209 1.47710 0.96188 1.23204 1.32122 1.19771 0.94141 0.89784 1.26140 0.96510 0.98134 0.98454 1.70197 1.38502 1.35337 1.10896 0.84955 0.78553 0.77483 0.77008 1.19299 1.20502 1.17965 1.23241 0.94423 1.00533 1.00526 1.22799 0.98905 0.96590 0.98385 1.23217 0.98580 0.99697 0.93238 0.92324 0.90576 0.92362 0.94069 0.92226 0.92532 0.90427 0.89362 0.75039 0.95158 0.89919 0.74190 0.87272 0.87162 0.92075 0.93613 0.88662 0.89394 0.90233 0.86908 0.87915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.67 71.98 0.70 -1.31 16 2 C -0.11 -2.09 4.75 30.59 0.15 -1.94 16 3 C -0.11 -1.88 2.73 -11.54 -0.03 -1.91 16 4 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 5 C -0.14 -1.37 8.84 71.98 0.64 -0.73 16 6 C 0.51 12.91 7.15 87.66 0.63 13.53 16 7 O -0.59 -21.21 15.91 -3.04 -0.05 -21.26 16 8 N -0.71 -14.51 5.28 -463.06 -2.44 -16.95 16 9 C 0.13 3.10 5.09 86.38 0.44 3.54 16 10 C 0.14 2.69 0.64 4.13 0.00 2.69 16 11 N -0.69 -14.75 4.51 -420.55 -1.90 -16.65 16 12 C 0.54 18.58 7.36 87.65 0.65 19.22 16 13 O -0.55 -24.98 13.87 -3.04 -0.04 -25.02 16 14 C -0.13 -4.83 6.16 71.23 0.44 -4.39 16 15 S -0.15 -8.54 20.57 -56.49 -1.16 -9.70 16 16 C -0.54 -30.76 9.50 67.95 0.65 -30.12 16 17 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 18 C 0.01 0.69 5.49 84.85 0.47 1.16 16 19 N -0.91 -56.35 13.22 21.65 0.29 -56.07 16 20 Si 1.00 43.27 29.55 68.60 2.03 45.30 16 21 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 22 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 23 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 24 C -0.15 -3.34 6.88 31.12 0.21 -3.13 16 25 C -0.13 -1.84 7.99 31.13 0.25 -1.60 16 26 C -0.11 -1.13 7.39 31.12 0.23 -0.90 16 27 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.08 0.74 6.57 -2.39 -0.02 0.72 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.04 1.04 7.95 -2.39 -0.02 1.02 16 31 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.08 0.49 7.56 -2.39 -0.02 0.47 16 34 H 0.09 0.61 6.57 -2.39 -0.02 0.59 16 35 H 0.41 5.56 7.54 -92.71 -0.70 4.86 16 36 H 0.03 1.07 7.63 -2.39 -0.02 1.06 16 37 H 0.08 1.83 7.94 -2.39 -0.02 1.81 16 38 H 0.42 5.43 8.75 -92.70 -0.81 4.62 16 39 H 0.11 3.64 8.14 -2.39 -0.02 3.63 16 40 H 0.11 3.70 8.14 -2.40 -0.02 3.68 16 41 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 42 H 0.04 1.43 6.75 -2.38 -0.02 1.41 16 43 H 0.09 1.99 8.10 -2.39 -0.02 1.97 16 44 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.11 0.88 7.96 -2.39 -0.02 0.86 16 47 H 0.10 0.55 8.13 -2.39 -0.02 0.53 16 Total: -1.00 -85.52 394.73 1.59 -83.93 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: -0.54 Total: 22.30 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: 5.40 Total: -5.88 kcal Atomic # 7 Polarization: -85.61 SS G_CDS: -4.06 Total: -89.66 kcal Atomic # 8 Polarization: -46.19 SS G_CDS: -0.09 Total: -46.28 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: -8.54 SS G_CDS: -1.16 Total: -9.70 kcal Total: -85.52 1.59 -83.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062570517.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.473 kcal (2) G-P(sol) polarization free energy of solvation -85.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds