Wall clock time and date at job start Tue Mar 31 2020 15:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47156 * 2 1 4 4 H 1.09000 * 109.46993 * 305.00110 * 3 2 1 5 5 C 1.52995 * 109.46634 * 65.00348 * 3 2 1 6 6 C 1.50694 * 109.47087 * 185.00363 * 3 2 1 7 7 O 1.21281 * 119.99958 * 0.02562 * 6 3 2 8 8 N 1.34779 * 119.99969 * 179.97438 * 6 3 2 9 9 C 1.46505 * 119.99948 * 174.95357 * 8 6 3 10 10 C 1.52996 * 112.84875 * 294.00033 * 9 8 6 11 11 N 1.46499 * 109.47072 * 311.47077 * 10 9 8 12 12 C 1.34785 * 119.99784 * 174.96189 * 11 10 9 13 13 O 1.21273 * 120.00034 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.99589 * 180.02562 * 12 11 10 15 15 S 1.81008 * 109.46875 * 179.97438 * 14 12 11 16 16 C 1.76198 * 99.99799 * 179.97438 * 15 14 12 17 17 H 1.08002 * 120.00267 * 359.97438 * 16 15 14 18 18 C 1.38802 * 120.00054 * 179.97438 * 16 15 14 19 19 N 1.31637 * 119.99448 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00333 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46876 * 90.00095 * 20 18 16 22 22 H 1.48498 * 109.47170 * 210.00229 * 20 18 16 23 23 H 1.48505 * 109.47079 * 330.00156 * 20 18 16 24 24 C 1.53777 * 113.61241 * 162.68990 * 9 8 6 25 25 C 1.53778 * 87.08419 * 270.88344 * 24 9 8 26 26 C 1.53781 * 113.61237 * 65.19408 * 9 8 6 27 27 H 1.09005 * 109.46988 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47320 * 59.99716 * 1 2 3 29 29 H 1.09005 * 109.46772 * 299.99326 * 1 2 3 30 30 H 1.08996 * 109.47465 * 120.00776 * 2 1 3 31 31 H 1.09004 * 109.46541 * 240.00180 * 2 1 3 32 32 H 1.09005 * 109.46534 * 180.02562 * 5 3 2 33 33 H 1.08998 * 109.47590 * 299.99817 * 5 3 2 34 34 H 1.09000 * 109.47624 * 60.00149 * 5 3 2 35 35 H 0.96995 * 120.00146 * 354.95790 * 8 6 3 36 36 H 1.09002 * 109.47418 * 71.47159 * 10 9 8 37 37 H 1.09006 * 109.47212 * 191.47287 * 10 9 8 38 38 H 0.96997 * 120.00423 * 354.96161 * 11 10 9 39 39 H 1.09004 * 109.47252 * 299.99643 * 14 12 11 40 40 H 1.08998 * 109.47653 * 60.00116 * 14 12 11 41 41 H 0.97000 * 119.99303 * 179.97438 * 19 18 16 42 42 H 1.09001 * 113.61144 * 25.43913 * 24 9 8 43 43 H 1.08998 * 113.61078 * 156.33223 * 24 9 8 44 44 H 1.08993 * 113.61678 * 220.01799 * 25 24 9 45 45 H 1.09005 * 113.61033 * 89.11643 * 25 24 9 46 46 H 1.09003 * 113.61239 * 203.66216 * 26 9 8 47 47 H 1.09008 * 113.61598 * 334.56866 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1264 1.3074 6 6 3.5419 1.4443 -0.1239 7 8 4.1449 0.3951 -0.2048 8 7 4.2149 2.6118 -0.1459 9 6 5.6799 2.6128 -0.1548 10 6 6.2822 2.0596 1.1383 11 7 5.6354 2.6948 2.2891 12 6 5.9342 2.2886 3.5391 13 8 6.7387 1.3976 3.7111 14 6 5.2684 2.9417 4.7228 15 16 5.8734 2.1818 6.2503 16 6 4.9581 3.1090 7.4365 17 1 4.2748 3.8789 7.1097 18 6 5.1151 2.8499 8.7911 19 7 5.9483 1.9119 9.1894 20 14 4.1454 3.8333 10.0487 21 1 2.8547 3.1515 10.3217 22 1 4.9272 3.9352 11.3071 23 1 3.8833 5.1949 9.5172 24 6 6.2923 3.9519 -0.5984 25 6 6.2309 3.4134 -2.0375 26 6 6.2886 2.0025 -1.4283 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 0.5138 0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.9983 3.1542 1.3072 33 1 0.5491 2.1251 1.3970 34 1 2.0700 1.5874 2.1492 35 1 3.7293 3.4514 -0.1558 36 1 6.1233 0.9821 1.1812 37 1 7.3515 2.2704 1.1603 38 1 4.9922 3.4077 2.1516 39 1 5.5016 4.0064 4.7292 40 1 4.1891 2.8065 4.6530 41 1 6.0584 1.7311 10.1360 42 1 5.6412 4.8086 -0.4245 43 1 7.3074 4.1096 -0.2341 44 1 7.1058 3.6666 -2.6361 45 1 5.2915 3.6315 -2.5455 46 1 7.3028 1.6274 -1.2910 47 1 5.6345 1.2855 -1.9246 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001062578500.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:30 Heat of formation + Delta-G solvation = -71.984565 kcal Electronic energy + Delta-G solvation = -26410.645946 eV Core-core repulsion = 22719.708119 eV Total energy + Delta-G solvation = -3690.937827 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.04023 -39.06627 -38.46316 -35.55514 -34.21476 -33.37058 -32.41803 -30.13608 -29.68250 -27.28888 -26.12200 -25.58236 -25.42744 -23.23432 -22.03138 -20.36083 -19.96689 -19.45407 -17.90707 -17.36787 -16.61967 -16.27997 -15.86188 -15.46682 -15.28712 -15.05968 -14.84399 -14.79737 -14.09810 -13.92320 -13.78993 -13.69953 -13.29163 -12.99868 -12.77236 -12.67056 -12.58924 -12.38518 -12.11253 -11.92616 -11.81202 -11.66266 -11.28280 -11.15339 -11.06258 -11.05691 -11.01598 -10.91152 -10.75563 -10.65828 -9.81188 -9.77361 -9.41545 -9.20095 -9.06041 -8.78915 -8.21255 -6.48280 -6.20574 -3.90908 2.47387 2.79098 3.08341 3.16729 3.22483 3.28506 3.33060 3.73414 4.07066 4.21263 4.27826 4.39315 4.46877 4.48659 4.57039 4.67787 4.97426 5.09476 5.13356 5.14387 5.21214 5.24535 5.31074 5.32261 5.41232 5.51161 5.54118 5.55937 5.61904 5.64659 5.71451 5.76388 5.79689 5.83805 5.88968 5.91274 6.00529 6.04233 6.13437 6.14006 6.35892 6.68582 7.24677 7.60046 7.76374 8.06004 8.35895 8.68038 9.24489 10.86845 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012179 B = 0.003103 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.551351 B = 9021.364633 C =10458.107123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.106 4.106 3 C -0.109 4.109 4 H 0.093 0.907 5 C -0.147 4.147 6 C 0.521 3.479 7 O -0.525 6.525 8 N -0.713 5.713 9 C 0.140 3.860 10 C 0.125 3.875 11 N -0.732 5.732 12 C 0.530 3.470 13 O -0.516 6.516 14 C -0.151 4.151 15 S -0.059 6.059 16 C -0.536 4.536 17 H 0.072 0.928 18 C 0.073 3.927 19 N -0.867 5.867 20 Si 0.918 3.082 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C -0.136 4.136 25 C -0.140 4.140 26 C -0.132 4.132 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.400 0.600 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.393 0.607 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.268 0.732 42 H 0.073 0.927 43 H 0.099 0.901 44 H 0.071 0.929 45 H 0.079 0.921 46 H 0.092 0.908 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.042 5.523 -25.104 26.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.144 4.144 3 C -0.130 4.130 4 H 0.112 0.888 5 C -0.205 4.205 6 C 0.308 3.692 7 O -0.399 6.399 8 N -0.366 5.366 9 C 0.053 3.947 10 C -0.001 4.001 11 N -0.386 5.386 12 C 0.316 3.684 13 O -0.390 6.390 14 C -0.302 4.302 15 S 0.168 5.832 16 C -0.684 4.684 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.197 1.197 24 C -0.174 4.174 25 C -0.177 4.177 26 C -0.171 4.171 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.235 0.765 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.226 0.774 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.078 0.922 42 H 0.092 0.908 43 H 0.117 0.883 44 H 0.090 0.910 45 H 0.097 0.903 46 H 0.111 0.889 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.160 3.145 -24.701 25.651 hybrid contribution -2.113 2.479 0.570 3.307 sum -8.274 5.624 -24.132 26.123 Atomic orbital electron populations 1.21843 0.95461 1.01989 1.01781 1.21349 0.95376 0.94068 1.03643 1.21355 0.91556 0.99629 1.00504 0.88847 1.21848 1.02524 1.00115 0.96006 1.20708 0.89934 0.83406 0.75155 1.90719 1.70171 1.31291 1.47761 1.45681 1.05395 1.08907 1.76606 1.21569 0.80490 0.97861 0.94765 1.21545 0.96459 0.99095 0.82982 1.45821 1.46844 1.40547 1.05404 1.20290 0.81952 0.82784 0.83391 1.90706 1.33575 1.29562 1.85199 1.23513 1.03398 1.03860 0.99453 1.85439 1.57329 1.49052 0.91426 1.22865 1.29181 1.23366 0.92976 0.90998 1.24993 0.95469 0.95442 0.97687 1.70025 1.34095 1.29862 1.16259 0.86174 0.79532 0.79879 0.79945 1.20280 1.20752 1.19714 1.23278 1.02127 0.95475 0.96477 1.22843 1.02265 0.96494 0.96118 1.23160 1.01872 0.97016 0.95017 0.92426 0.92897 0.92284 0.91025 0.91271 0.92275 0.91083 0.91524 0.76492 0.90216 0.90994 0.77353 0.89390 0.89494 0.92191 0.90787 0.88266 0.90988 0.90256 0.88949 0.90265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.67 37.16 0.36 -0.75 16 2 C -0.11 -0.98 4.75 -26.73 -0.13 -1.11 16 3 C -0.11 -0.88 2.72 -91.78 -0.25 -1.13 16 4 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 5 C -0.15 -1.13 8.85 37.16 0.33 -0.80 16 6 C 0.52 5.48 6.71 -10.99 -0.07 5.40 16 7 O -0.52 -7.73 13.92 5.56 0.08 -7.65 16 8 N -0.71 -5.64 4.39 -46.86 -0.21 -5.85 16 9 C 0.14 1.26 0.63 -131.01 -0.08 1.18 16 10 C 0.12 1.61 4.93 -4.04 -0.02 1.59 16 11 N -0.73 -10.12 5.38 -60.29 -0.32 -10.44 16 12 C 0.53 10.24 7.85 -10.98 -0.09 10.16 16 13 O -0.52 -12.29 15.86 5.56 0.09 -12.20 16 14 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 15 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 16 C -0.54 -15.32 9.50 30.94 0.29 -15.03 16 17 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 18 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 19 N -0.87 -26.33 13.22 55.49 0.73 -25.60 16 20 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 C -0.14 -0.89 7.37 -25.92 -0.19 -1.08 16 25 C -0.14 -0.89 7.99 -25.92 -0.21 -1.10 16 26 C -0.13 -1.16 6.95 -25.92 -0.18 -1.34 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.41 6.57 -51.93 -0.34 0.07 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.69 7.95 -51.93 -0.41 0.28 16 32 H 0.06 0.35 7.69 -51.93 -0.40 -0.05 16 33 H 0.07 0.47 6.56 -51.93 -0.34 0.13 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.40 2.02 8.25 -40.82 -0.34 1.69 16 36 H 0.08 1.32 7.35 -51.93 -0.38 0.94 16 37 H 0.07 0.93 7.94 -51.93 -0.41 0.52 16 38 H 0.39 4.23 8.11 -40.82 -0.33 3.90 16 39 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 40 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 41 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 43 H 0.10 0.67 7.96 -51.93 -0.41 0.26 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.09 0.80 8.10 -51.93 -0.42 0.38 16 47 H 0.08 0.83 7.19 -51.92 -0.37 0.46 16 LS Contribution 394.94 15.07 5.95 5.95 Total: -1.00 -36.49 394.94 -8.96 -45.44 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -7.93 Total: 2.67 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -0.11 Total: -4.87 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 0.20 Total: -41.89 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: 0.17 Total: -19.86 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.49 -8.96 -45.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062578500.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.542 kcal (2) G-P(sol) polarization free energy of solvation -36.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds