Wall clock time and date at job start Tue Mar 31 2020 15:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47156 * 2 1 4 4 H 1.09000 * 109.46993 * 305.00110 * 3 2 1 5 5 C 1.52995 * 109.46634 * 65.00348 * 3 2 1 6 6 C 1.50694 * 109.47087 * 185.00363 * 3 2 1 7 7 O 1.21281 * 119.99958 * 0.02562 * 6 3 2 8 8 N 1.34779 * 119.99969 * 179.97438 * 6 3 2 9 9 C 1.46505 * 119.99948 * 174.95357 * 8 6 3 10 10 C 1.52996 * 112.84875 * 294.00033 * 9 8 6 11 11 N 1.46499 * 109.47072 * 311.47077 * 10 9 8 12 12 C 1.34785 * 119.99784 * 174.96189 * 11 10 9 13 13 O 1.21273 * 120.00034 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.99589 * 180.02562 * 12 11 10 15 15 S 1.81008 * 109.46875 * 179.97438 * 14 12 11 16 16 C 1.76198 * 99.99799 * 179.97438 * 15 14 12 17 17 H 1.08002 * 120.00267 * 359.97438 * 16 15 14 18 18 C 1.38802 * 120.00054 * 179.97438 * 16 15 14 19 19 N 1.31637 * 119.99448 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00333 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46876 * 90.00095 * 20 18 16 22 22 H 1.48498 * 109.47170 * 210.00229 * 20 18 16 23 23 H 1.48505 * 109.47079 * 330.00156 * 20 18 16 24 24 C 1.53777 * 113.61241 * 162.68990 * 9 8 6 25 25 C 1.53778 * 87.08419 * 270.88344 * 24 9 8 26 26 C 1.53781 * 113.61237 * 65.19408 * 9 8 6 27 27 H 1.09005 * 109.46988 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47320 * 59.99716 * 1 2 3 29 29 H 1.09005 * 109.46772 * 299.99326 * 1 2 3 30 30 H 1.08996 * 109.47465 * 120.00776 * 2 1 3 31 31 H 1.09004 * 109.46541 * 240.00180 * 2 1 3 32 32 H 1.09005 * 109.46534 * 180.02562 * 5 3 2 33 33 H 1.08998 * 109.47590 * 299.99817 * 5 3 2 34 34 H 1.09000 * 109.47624 * 60.00149 * 5 3 2 35 35 H 0.96995 * 120.00146 * 354.95790 * 8 6 3 36 36 H 1.09002 * 109.47418 * 71.47159 * 10 9 8 37 37 H 1.09006 * 109.47212 * 191.47287 * 10 9 8 38 38 H 0.96997 * 120.00423 * 354.96161 * 11 10 9 39 39 H 1.09004 * 109.47252 * 299.99643 * 14 12 11 40 40 H 1.08998 * 109.47653 * 60.00116 * 14 12 11 41 41 H 0.97000 * 119.99303 * 179.97438 * 19 18 16 42 42 H 1.09001 * 113.61144 * 25.43913 * 24 9 8 43 43 H 1.08998 * 113.61078 * 156.33223 * 24 9 8 44 44 H 1.08993 * 113.61678 * 220.01799 * 25 24 9 45 45 H 1.09005 * 113.61033 * 89.11643 * 25 24 9 46 46 H 1.09003 * 113.61239 * 203.66216 * 26 9 8 47 47 H 1.09008 * 113.61598 * 334.56866 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1264 1.3074 6 6 3.5419 1.4443 -0.1239 7 8 4.1449 0.3951 -0.2048 8 7 4.2149 2.6118 -0.1459 9 6 5.6799 2.6128 -0.1548 10 6 6.2822 2.0596 1.1383 11 7 5.6354 2.6948 2.2891 12 6 5.9342 2.2886 3.5391 13 8 6.7387 1.3976 3.7111 14 6 5.2684 2.9417 4.7228 15 16 5.8734 2.1818 6.2503 16 6 4.9581 3.1090 7.4365 17 1 4.2748 3.8789 7.1097 18 6 5.1151 2.8499 8.7911 19 7 5.9483 1.9119 9.1894 20 14 4.1454 3.8333 10.0487 21 1 2.8547 3.1515 10.3217 22 1 4.9272 3.9352 11.3071 23 1 3.8833 5.1949 9.5172 24 6 6.2923 3.9519 -0.5984 25 6 6.2309 3.4134 -2.0375 26 6 6.2886 2.0025 -1.4283 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 0.5138 0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.9983 3.1542 1.3072 33 1 0.5491 2.1251 1.3970 34 1 2.0700 1.5874 2.1492 35 1 3.7293 3.4514 -0.1558 36 1 6.1233 0.9821 1.1812 37 1 7.3515 2.2704 1.1603 38 1 4.9922 3.4077 2.1516 39 1 5.5016 4.0064 4.7292 40 1 4.1891 2.8065 4.6530 41 1 6.0584 1.7311 10.1360 42 1 5.6412 4.8086 -0.4245 43 1 7.3074 4.1096 -0.2341 44 1 7.1058 3.6666 -2.6361 45 1 5.2915 3.6315 -2.5455 46 1 7.3028 1.6274 -1.2910 47 1 5.6345 1.2855 -1.9246 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001062578500.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:29 Heat of formation + Delta-G solvation = -98.246385 kcal Electronic energy + Delta-G solvation = -26411.784744 eV Core-core repulsion = 22719.708119 eV Total energy + Delta-G solvation = -3692.076625 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.87470 -40.43644 -39.39088 -36.31707 -35.53566 -34.58291 -34.20732 -31.49818 -30.50380 -28.46145 -27.60356 -26.75988 -26.23484 -24.07640 -22.77078 -21.79328 -20.73760 -20.27268 -19.83085 -18.16709 -17.94311 -17.55811 -16.88076 -16.82543 -16.51279 -16.42803 -15.90674 -15.75890 -15.70246 -14.96324 -14.80180 -14.65034 -14.45722 -14.41590 -14.09158 -13.58877 -13.42950 -13.27483 -13.16752 -12.97380 -12.88887 -12.80096 -12.60792 -12.53035 -12.49544 -11.89806 -11.86093 -11.73142 -11.70071 -11.61080 -11.34534 -11.14208 -11.00946 -10.63828 -10.27701 -10.13015 -10.06740 -8.67905 -8.34384 -6.13221 1.25934 1.43078 1.46781 1.57071 1.58945 1.65246 2.04869 2.26937 2.30978 2.99877 3.30500 3.37775 3.60563 3.65229 3.75377 3.85201 3.92193 3.98106 4.00614 4.26506 4.33299 4.44794 4.46579 4.48502 4.52400 4.60084 4.71379 4.73192 4.80152 4.84021 4.95770 5.01291 5.05019 5.09812 5.11372 5.13352 5.18299 5.25473 5.37701 5.38983 5.41688 5.47679 5.66844 6.19866 6.46718 6.57517 7.06578 7.22254 7.31167 8.74977 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012179 B = 0.003103 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.551351 B = 9021.364633 C =10458.107123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.108 4.108 3 C -0.102 4.102 4 H 0.129 0.871 5 C -0.146 4.146 6 C 0.514 3.486 7 O -0.576 6.576 8 N -0.696 5.696 9 C 0.138 3.862 10 C 0.127 3.873 11 N -0.701 5.701 12 C 0.530 3.470 13 O -0.570 6.570 14 C -0.125 4.125 15 S -0.156 6.156 16 C -0.544 4.544 17 H 0.085 0.915 18 C 0.012 3.988 19 N -0.913 5.913 20 Si 1.000 3.000 21 H -0.268 1.268 22 H -0.279 1.279 23 H -0.255 1.255 24 C -0.122 4.122 25 C -0.124 4.124 26 C -0.140 4.140 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.038 0.962 31 H 0.055 0.945 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.033 0.967 35 H 0.420 0.580 36 H 0.038 0.962 37 H 0.072 0.928 38 H 0.413 0.587 39 H 0.114 0.886 40 H 0.107 0.893 41 H 0.271 0.729 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.083 0.917 45 H 0.091 0.909 46 H 0.086 0.914 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.401 9.445 -26.573 30.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.146 4.146 3 C -0.123 4.123 4 H 0.147 0.853 5 C -0.203 4.203 6 C 0.302 3.698 7 O -0.454 6.454 8 N -0.350 5.350 9 C 0.051 3.949 10 C 0.001 3.999 11 N -0.355 5.355 12 C 0.316 3.684 13 O -0.448 6.448 14 C -0.276 4.276 15 S 0.071 5.929 16 C -0.692 4.692 17 H 0.103 0.897 18 C -0.193 4.193 19 N -0.549 5.549 20 Si 0.822 3.178 21 H -0.193 1.193 22 H -0.204 1.204 23 H -0.179 1.179 24 C -0.160 4.160 25 C -0.161 4.161 26 C -0.179 4.179 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.052 0.948 35 H 0.258 0.742 36 H 0.056 0.944 37 H 0.090 0.910 38 H 0.250 0.750 39 H 0.132 0.868 40 H 0.126 0.874 41 H 0.080 0.920 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.102 0.898 45 H 0.110 0.890 46 H 0.105 0.895 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.564 7.146 -26.225 28.499 hybrid contribution -1.356 1.193 0.894 2.015 sum -9.921 8.339 -25.332 28.454 Atomic orbital electron populations 1.21806 0.93485 1.02254 1.02936 1.21319 0.97038 0.94818 1.01398 1.21377 0.89663 0.99087 1.02181 0.85350 1.21862 1.03443 1.00789 0.94199 1.21273 0.91087 0.83232 0.74173 1.90713 1.71315 1.33292 1.50089 1.45537 1.04962 1.09172 1.75353 1.21590 0.81060 0.99937 0.92331 1.21596 0.96979 0.96938 0.84340 1.45496 1.46127 1.40012 1.03861 1.20188 0.81383 0.82182 0.84695 1.90696 1.36085 1.31978 1.86050 1.23330 1.04138 1.04369 0.95747 1.85690 1.59128 1.51553 0.96494 1.23201 1.29210 1.23444 0.93370 0.89692 1.26167 0.96452 0.96491 1.00154 1.70202 1.36029 1.31860 1.16839 0.84928 0.77725 0.78649 0.76520 1.19346 1.20411 1.17877 1.23259 1.02416 0.94409 0.95911 1.22790 1.03483 0.93658 0.96184 1.23201 1.01113 0.98405 0.95197 0.92761 0.90952 0.91744 0.94318 0.92620 0.89855 0.89517 0.94769 0.74174 0.94381 0.90953 0.74966 0.86799 0.87430 0.92034 0.88094 0.88163 0.89813 0.89001 0.89521 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.67 71.98 0.70 -1.24 16 2 C -0.11 -2.01 4.75 30.60 0.15 -1.87 16 3 C -0.10 -1.47 2.72 -11.54 -0.03 -1.50 16 4 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 5 C -0.15 -1.89 8.85 71.98 0.64 -1.25 16 6 C 0.51 10.50 6.71 87.65 0.59 11.09 16 7 O -0.58 -17.89 13.92 -3.03 -0.04 -17.93 16 8 N -0.70 -9.46 4.39 -420.55 -1.85 -11.31 16 9 C 0.14 2.28 0.63 4.13 0.00 2.29 16 10 C 0.13 3.31 4.93 86.38 0.43 3.74 16 11 N -0.70 -18.65 5.38 -463.06 -2.49 -21.14 16 12 C 0.53 20.56 7.85 87.66 0.69 21.24 16 13 O -0.57 -28.33 15.86 -3.01 -0.05 -28.37 16 14 C -0.12 -4.99 6.16 71.24 0.44 -4.55 16 15 S -0.16 -8.81 20.57 -56.49 -1.16 -9.97 16 16 C -0.54 -31.12 9.50 67.95 0.65 -30.48 16 17 H 0.08 4.46 7.80 -2.91 -0.02 4.43 16 18 C 0.01 0.68 5.49 84.86 0.47 1.15 16 19 N -0.91 -56.64 13.22 21.65 0.29 -56.36 16 20 Si 1.00 43.43 29.55 68.60 2.03 45.46 16 21 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 22 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 23 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 24 C -0.12 -1.17 7.37 31.12 0.23 -0.94 16 25 C -0.12 -1.19 7.99 31.12 0.25 -0.94 16 26 C -0.14 -2.39 6.95 31.12 0.22 -2.17 16 27 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 28 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.78 6.57 -2.38 -0.02 0.76 16 30 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.05 1.17 7.95 -2.39 -0.02 1.15 16 32 H 0.08 0.66 7.69 -2.38 -0.02 0.64 16 33 H 0.09 0.88 6.56 -2.39 -0.02 0.86 16 34 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.42 2.44 8.25 -92.71 -0.76 1.68 16 36 H 0.04 1.34 7.35 -2.39 -0.02 1.33 16 37 H 0.07 1.90 7.94 -2.38 -0.02 1.88 16 38 H 0.41 7.65 8.11 -92.71 -0.75 6.90 16 39 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 40 H 0.11 3.87 8.14 -2.40 -0.02 3.86 16 41 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 42 H 0.10 0.50 8.09 -2.39 -0.02 0.48 16 43 H 0.10 1.02 7.96 -2.39 -0.02 1.01 16 44 H 0.08 0.67 8.14 -2.39 -0.02 0.66 16 45 H 0.09 0.70 8.14 -2.38 -0.02 0.69 16 46 H 0.09 1.54 8.10 -2.39 -0.02 1.52 16 47 H 0.06 1.25 7.19 -2.38 -0.02 1.23 16 Total: -1.00 -86.00 394.94 1.57 -84.42 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: -0.54 Total: 20.63 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: 5.40 Total: -5.43 kcal Atomic # 7 Polarization: -84.75 SS G_CDS: -4.05 Total: -88.81 kcal Atomic # 8 Polarization: -46.21 SS G_CDS: -0.09 Total: -46.30 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: -8.81 SS G_CDS: -1.16 Total: -9.97 kcal Total: -86.00 1.57 -84.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062578500.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.822 kcal (2) G-P(sol) polarization free energy of solvation -85.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds