Wall clock time and date at job start Tue Mar 31 2020 15:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47382 * 2 1 4 4 H 1.09000 * 109.47022 * 54.99891 * 3 2 1 5 5 C 1.52995 * 109.46917 * 294.99717 * 3 2 1 6 6 C 1.50695 * 109.47212 * 174.99525 * 3 2 1 7 7 O 1.21278 * 120.00110 * 359.97438 * 6 3 2 8 8 N 1.34773 * 120.00043 * 180.02562 * 6 3 2 9 9 C 1.46507 * 120.00251 * 174.97561 * 8 6 3 10 10 C 1.53000 * 112.84608 * 294.00685 * 9 8 6 11 11 N 1.46491 * 109.47442 * 311.51472 * 10 9 8 12 12 C 1.34780 * 120.00418 * 174.95960 * 11 10 9 13 13 O 1.21284 * 119.99222 * 0.02562 * 12 11 10 14 14 C 1.50693 * 120.00275 * 180.02562 * 12 11 10 15 15 S 1.81010 * 109.47122 * 180.02562 * 14 12 11 16 16 C 1.76198 * 99.99905 * 180.02562 * 15 14 12 17 17 H 1.07993 * 119.99896 * 359.97438 * 16 15 14 18 18 C 1.38801 * 119.99752 * 180.02562 * 16 15 14 19 19 N 1.31632 * 120.00131 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99971 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47070 * 60.00121 * 20 18 16 22 22 H 1.48497 * 109.47146 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47185 * 300.00190 * 20 18 16 24 24 C 1.53777 * 113.61353 * 162.69875 * 9 8 6 25 25 C 1.53776 * 87.08470 * 270.88476 * 24 9 8 26 26 C 1.53774 * 113.61129 * 65.20360 * 9 8 6 27 27 H 1.09001 * 109.47488 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46646 * 60.00396 * 1 2 3 29 29 H 1.08993 * 109.47351 * 300.00392 * 1 2 3 30 30 H 1.09006 * 109.46853 * 120.00095 * 2 1 3 31 31 H 1.09002 * 109.47325 * 239.99546 * 2 1 3 32 32 H 1.09001 * 109.47111 * 59.99840 * 5 3 2 33 33 H 1.09003 * 109.47204 * 179.97438 * 5 3 2 34 34 H 1.09000 * 109.46928 * 299.99728 * 5 3 2 35 35 H 0.96999 * 120.00124 * 354.97996 * 8 6 3 36 36 H 1.08997 * 109.47299 * 71.52129 * 10 9 8 37 37 H 1.08997 * 109.46767 * 191.51538 * 10 9 8 38 38 H 0.96999 * 120.00156 * 354.96900 * 11 10 9 39 39 H 1.08998 * 109.47298 * 300.00092 * 14 12 11 40 40 H 1.08996 * 109.47225 * 60.00397 * 14 12 11 41 41 H 0.96999 * 120.00074 * 179.97438 * 19 18 16 42 42 H 1.09001 * 113.61637 * 25.43556 * 24 9 8 43 43 H 1.09005 * 113.61226 * 156.33646 * 24 9 8 44 44 H 1.09002 * 113.61893 * 220.02236 * 25 24 9 45 45 H 1.09003 * 113.61413 * 89.11352 * 25 24 9 46 46 H 1.09003 * 113.61150 * 203.66489 * 26 9 8 47 47 H 1.09000 * 113.61647 * 334.56327 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6354 2.1265 -1.3074 6 6 3.5419 1.4442 0.1239 7 8 4.1449 0.3951 0.2048 8 7 4.2149 2.6117 0.1459 9 6 5.6616 2.6191 0.3767 10 6 6.0417 2.1430 1.7802 11 7 5.2178 2.8386 2.7717 12 6 5.3060 2.5052 4.0747 13 8 6.0680 1.6295 4.4262 14 6 4.4580 3.2203 5.0946 15 16 4.8025 2.5521 6.7412 16 6 3.7077 3.5386 7.7069 17 1 3.0892 4.2841 7.2294 18 6 3.6409 3.3582 9.0816 19 7 4.3951 2.4498 9.6636 20 14 2.4807 4.4045 10.1056 21 1 1.0848 4.1889 9.6473 22 1 2.5971 4.0185 11.5348 23 1 2.8375 5.8374 9.9487 24 6 6.3445 3.9337 -0.0359 25 6 6.5168 3.3142 -1.4328 26 6 6.4675 1.9405 -0.7434 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 0.5138 0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 0.5490 2.1252 -1.3970 33 1 1.9983 3.1543 -1.3072 34 1 2.0700 1.5874 -2.1491 35 1 3.7414 3.4471 0.0091 36 1 5.8738 1.0688 1.8574 37 1 7.0937 2.3604 1.9651 38 1 4.6085 3.5390 2.4906 39 1 4.6912 4.2850 5.0788 40 1 3.4042 3.0757 4.8567 41 1 4.3487 2.3240 10.6243 42 1 5.6778 4.7959 -0.0198 43 1 7.2872 4.1166 0.4798 44 1 7.4790 3.5371 -1.8938 45 1 5.6741 3.4987 -2.0992 46 1 7.4438 1.5784 -0.4211 47 1 5.9001 1.1934 -1.2985 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001062578501.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:35 Heat of formation + Delta-G solvation = -98.325119 kcal Electronic energy + Delta-G solvation = -26251.558042 eV Core-core repulsion = 22559.478003 eV Total energy + Delta-G solvation = -3692.080039 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.87834 -40.44692 -39.39057 -36.32356 -35.53923 -34.58566 -34.21368 -31.50560 -30.50554 -28.44826 -27.60321 -26.75522 -26.23621 -24.08258 -22.76806 -21.81011 -20.72708 -20.27566 -19.83152 -18.17656 -17.99747 -17.56276 -16.88132 -16.75162 -16.52329 -16.43911 -15.99122 -15.74737 -15.60954 -15.01248 -14.87017 -14.64561 -14.45761 -14.40216 -14.04110 -13.60253 -13.44779 -13.26508 -13.17554 -12.96192 -12.86165 -12.76653 -12.61670 -12.58127 -12.47460 -11.90357 -11.85783 -11.73558 -11.71703 -11.61630 -11.34757 -11.12803 -11.01466 -10.64526 -10.28510 -10.13805 -10.06922 -8.68308 -8.34378 -6.13524 1.25577 1.44464 1.46433 1.55983 1.58260 1.65804 2.03548 2.26975 2.30460 2.99688 3.30172 3.37381 3.59658 3.65610 3.75412 3.84610 3.92330 3.98194 4.00431 4.26196 4.33095 4.43572 4.46465 4.47480 4.54044 4.60301 4.71472 4.73797 4.80008 4.84162 4.98696 5.01683 5.05114 5.09096 5.10565 5.11322 5.19617 5.25299 5.36639 5.38594 5.41155 5.47602 5.66534 6.19434 6.46119 6.56740 7.06333 7.21610 7.30499 8.74750 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012191 B = 0.002976 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.238005 B = 9406.689079 C =10800.766782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.107 4.107 3 C -0.109 4.109 4 H 0.111 0.889 5 C -0.138 4.138 6 C 0.515 3.485 7 O -0.575 6.575 8 N -0.697 5.697 9 C 0.138 3.862 10 C 0.126 3.874 11 N -0.702 5.702 12 C 0.529 3.471 13 O -0.569 6.569 14 C -0.125 4.125 15 S -0.156 6.156 16 C -0.546 4.546 17 H 0.085 0.915 18 C 0.012 3.988 19 N -0.913 5.913 20 Si 1.000 3.000 21 H -0.261 1.261 22 H -0.280 1.280 23 H -0.260 1.260 24 C -0.122 4.122 25 C -0.124 4.124 26 C -0.140 4.140 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.038 0.962 31 H 0.057 0.943 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.053 0.947 35 H 0.419 0.581 36 H 0.038 0.962 37 H 0.073 0.927 38 H 0.414 0.586 39 H 0.114 0.886 40 H 0.108 0.892 41 H 0.271 0.729 42 H 0.100 0.900 43 H 0.100 0.900 44 H 0.083 0.917 45 H 0.092 0.908 46 H 0.086 0.914 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.788 7.823 -29.027 30.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.145 4.145 3 C -0.130 4.130 4 H 0.128 0.872 5 C -0.195 4.195 6 C 0.303 3.697 7 O -0.454 6.454 8 N -0.350 5.350 9 C 0.051 3.949 10 C 0.001 3.999 11 N -0.356 5.356 12 C 0.315 3.685 13 O -0.448 6.448 14 C -0.276 4.276 15 S 0.071 5.929 16 C -0.694 4.694 17 H 0.103 0.897 18 C -0.192 4.192 19 N -0.549 5.549 20 Si 0.822 3.178 21 H -0.186 1.186 22 H -0.205 1.205 23 H -0.184 1.184 24 C -0.160 4.160 25 C -0.161 4.161 26 C -0.179 4.179 27 H 0.073 0.927 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.072 0.928 35 H 0.258 0.742 36 H 0.057 0.943 37 H 0.091 0.909 38 H 0.251 0.749 39 H 0.132 0.868 40 H 0.126 0.874 41 H 0.080 0.920 42 H 0.119 0.881 43 H 0.119 0.881 44 H 0.102 0.898 45 H 0.110 0.890 46 H 0.105 0.895 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.044 5.552 -28.254 29.077 hybrid contribution -1.491 1.255 0.610 2.042 sum -5.535 6.807 -27.644 29.003 Atomic orbital electron populations 1.21810 0.93636 1.02272 1.02846 1.21308 0.96930 0.94790 1.01460 1.21416 0.89676 0.99187 1.02691 0.87151 1.21820 1.03432 1.00633 0.93649 1.21241 0.90979 0.83242 0.74233 1.90711 1.71232 1.33264 1.50173 1.45544 1.06737 1.09464 1.73298 1.21594 0.81712 1.00252 0.91372 1.21601 0.94935 0.96279 0.87082 1.45507 1.44673 1.40520 1.04886 1.20195 0.82200 0.82363 0.83714 1.90699 1.40267 1.33096 1.80725 1.23331 1.02971 1.04109 0.97205 1.85683 1.57203 1.52489 0.97477 1.23174 1.27272 1.23864 0.95091 0.89684 1.26168 0.97863 0.96903 0.98298 1.70190 1.39639 1.33693 1.11407 0.84980 0.78130 0.78340 0.76392 1.18571 1.20533 1.18414 1.23260 1.01520 0.94662 0.96549 1.22790 1.03495 0.93650 0.96159 1.23196 0.99917 0.98309 0.96472 0.92676 0.90553 0.92371 0.94328 0.92409 0.89735 0.90050 0.92810 0.74208 0.94333 0.90916 0.74932 0.86759 0.87414 0.92008 0.88106 0.88147 0.89800 0.88988 0.89511 0.92397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.67 71.98 0.70 -1.34 16 2 C -0.11 -2.02 4.75 30.59 0.15 -1.87 16 3 C -0.11 -1.60 2.73 -11.54 -0.03 -1.63 16 4 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 5 C -0.14 -1.09 8.84 71.98 0.64 -0.46 16 6 C 0.52 10.62 6.71 87.66 0.59 11.21 16 7 O -0.58 -17.95 13.92 -3.02 -0.04 -17.99 16 8 N -0.70 -9.59 4.46 -420.56 -1.87 -11.47 16 9 C 0.14 2.29 0.63 4.12 0.00 2.30 16 10 C 0.13 3.31 4.92 86.38 0.43 3.73 16 11 N -0.70 -18.76 5.38 -463.09 -2.49 -21.25 16 12 C 0.53 20.60 7.85 87.65 0.69 21.29 16 13 O -0.57 -28.35 15.86 -3.04 -0.05 -28.39 16 14 C -0.12 -5.02 6.16 71.23 0.44 -4.58 16 15 S -0.16 -8.82 20.57 -56.49 -1.16 -9.98 16 16 C -0.55 -31.30 9.50 67.95 0.65 -30.65 16 17 H 0.09 4.46 7.80 -2.91 -0.02 4.44 16 18 C 0.01 0.70 5.49 84.86 0.47 1.17 16 19 N -0.91 -56.73 13.22 21.65 0.29 -56.44 16 20 Si 1.00 43.45 29.55 68.60 2.03 45.48 16 21 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 22 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 23 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 24 C -0.12 -1.17 7.37 31.12 0.23 -0.94 16 25 C -0.12 -1.19 7.99 31.12 0.25 -0.94 16 26 C -0.14 -2.39 6.95 31.12 0.22 -2.17 16 27 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.08 0.74 6.57 -2.38 -0.02 0.72 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.04 0.97 7.95 -2.38 -0.02 0.95 16 31 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.08 0.48 6.56 -2.39 -0.02 0.47 16 33 H 0.08 0.28 7.46 -2.39 -0.02 0.26 16 34 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.42 2.56 7.95 -92.71 -0.74 1.82 16 36 H 0.04 1.36 7.34 -2.39 -0.02 1.34 16 37 H 0.07 1.91 7.94 -2.39 -0.02 1.89 16 38 H 0.41 7.70 8.11 -92.71 -0.75 6.95 16 39 H 0.11 4.01 8.14 -2.40 -0.02 3.99 16 40 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 41 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 42 H 0.10 0.50 8.09 -2.39 -0.02 0.48 16 43 H 0.10 1.03 7.96 -2.38 -0.02 1.01 16 44 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.09 1.54 8.10 -2.39 -0.02 1.52 16 47 H 0.06 1.25 7.19 -2.39 -0.02 1.23 16 Total: -1.00 -85.89 394.48 1.57 -84.32 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: -0.52 Total: 20.63 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: 5.39 Total: -4.89 kcal Atomic # 7 Polarization: -85.08 SS G_CDS: -4.08 Total: -89.16 kcal Atomic # 8 Polarization: -46.30 SS G_CDS: -0.09 Total: -46.39 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: -8.82 SS G_CDS: -1.16 Total: -9.98 kcal Total: -85.89 1.57 -84.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062578501.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.008 kcal (2) G-P(sol) polarization free energy of solvation -85.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds