Wall clock time and date at job start Tue Mar 31 2020 15:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47479 * 2 1 4 4 C 1.50704 * 109.47255 * 180.02562 * 3 2 1 5 5 O 1.21275 * 119.99848 * 0.02562 * 4 3 2 6 6 N 1.34778 * 119.99981 * 180.02562 * 4 3 2 7 7 C 1.46497 * 120.00060 * 179.97438 * 6 4 3 8 8 H 1.09003 * 109.48744 * 34.95406 * 7 6 4 9 9 C 1.52563 * 109.48840 * 154.99806 * 7 6 4 10 10 C 1.47091 * 114.32846 * 205.00172 * 9 7 6 11 11 C 1.54872 * 110.32052 * 297.20500 * 10 9 7 12 12 N 1.44575 * 109.60039 * 71.26470 * 11 10 9 13 13 C 1.34774 * 118.64649 * 89.25066 * 12 11 10 14 14 O 1.21281 * 120.00138 * 179.97438 * 13 12 11 15 15 C 1.50701 * 119.99741 * 0.02562 * 13 12 11 16 16 S 1.81005 * 109.47173 * 179.97438 * 15 13 12 17 17 C 1.76189 * 100.00097 * 179.97438 * 16 15 13 18 18 H 1.07999 * 120.00127 * 0.02562 * 17 16 15 19 19 C 1.38805 * 120.00013 * 180.02562 * 17 16 15 20 20 N 1.31633 * 120.00034 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47174 * 270.00277 * 21 19 17 23 23 H 1.48501 * 109.47062 * 30.00228 * 21 19 17 24 24 H 1.48490 * 109.46901 * 150.00205 * 21 19 17 25 25 C 1.47604 * 122.70797 * 269.52997 * 12 11 10 26 26 C 1.50880 * 109.50739 * 274.89864 * 7 6 4 27 27 H 1.09001 * 109.47308 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46972 * 300.00003 * 1 2 3 29 29 H 1.09000 * 109.47204 * 59.99352 * 1 2 3 30 30 H 1.09007 * 109.47127 * 240.00525 * 2 1 3 31 31 H 1.09000 * 109.47204 * 120.00648 * 2 1 3 32 32 H 1.09007 * 109.46513 * 60.00149 * 3 2 1 33 33 H 1.09000 * 109.47432 * 300.00508 * 3 2 1 34 34 H 0.97003 * 119.99828 * 359.97438 * 6 4 3 35 35 H 1.09001 * 108.51352 * 83.75005 * 9 7 6 36 36 H 1.08996 * 108.51584 * 326.26043 * 9 7 6 37 37 H 1.08993 * 109.33303 * 176.94530 * 10 9 7 38 38 H 1.08997 * 109.32813 * 57.45924 * 10 9 7 39 39 H 1.08998 * 109.44596 * 311.21920 * 11 10 9 40 40 H 1.09005 * 109.44615 * 191.30491 * 11 10 9 41 41 H 1.09005 * 109.47318 * 59.99759 * 15 13 12 42 42 H 1.09002 * 109.47150 * 299.99724 * 15 13 12 43 43 H 0.97001 * 119.99662 * 179.97438 * 20 19 17 44 44 H 1.09008 * 108.94494 * 162.56750 * 25 12 11 45 45 H 1.09001 * 108.94688 * 281.18771 * 25 12 11 46 46 H 1.09000 * 109.36419 * 268.32352 * 26 7 6 47 47 H 1.08995 * 109.37099 * 28.07118 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4424 -0.0006 5 8 4.1534 0.3921 -0.0015 6 7 4.2210 2.6096 -0.0002 7 6 5.6860 2.6095 -0.0003 8 1 6.0496 1.7675 -0.5893 9 6 6.1950 3.9132 -0.6077 10 6 7.5422 3.8244 -1.1913 11 6 8.5814 3.4805 -0.0957 12 7 8.4083 2.1075 0.3230 13 6 9.0819 1.1421 -0.3332 14 8 8.9553 -0.0178 -0.0022 15 6 9.9933 1.5040 -1.4775 16 16 10.7478 0.0008 -2.1465 17 6 11.7321 0.6981 -3.4308 18 1 11.7303 1.7658 -3.5933 19 6 12.5098 -0.1249 -4.2337 20 7 13.2447 0.3960 -5.1935 21 14 12.5134 -1.9716 -3.9520 22 1 13.5832 -2.3225 -2.9838 23 1 11.1967 -2.3920 -3.4089 24 1 12.7630 -2.6681 -5.2395 25 6 7.5196 1.7190 1.4357 26 6 6.1899 2.4876 1.4167 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9562 0.8901 33 1 1.6767 1.9564 -0.8899 34 1 3.7360 3.4497 0.0001 35 1 6.2044 4.6769 0.1700 36 1 5.5002 4.2265 -1.3869 37 1 7.8016 4.7798 -1.6473 38 1 7.5537 3.0477 -1.9559 39 1 8.4395 4.1414 0.7593 40 1 9.5870 3.6143 -0.4945 41 1 10.7750 2.1749 -1.1212 42 1 9.4168 2.0000 -2.2583 43 1 13.7885 -0.1792 -5.7543 44 1 7.3121 0.6511 1.3665 45 1 8.0264 1.9189 2.3798 46 1 6.3389 3.4833 1.8342 47 1 5.4554 1.9503 2.0165 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001065746257.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:38 Heat of formation + Delta-G solvation = -88.640402 kcal Electronic energy + Delta-G solvation = -26315.732217 eV Core-core repulsion = 22624.072139 eV Total energy + Delta-G solvation = -3691.660078 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.64684 -39.61004 -37.57651 -35.15672 -34.57179 -33.11433 -32.41137 -32.22633 -29.29486 -28.21563 -26.58437 -25.60340 -25.03819 -22.39450 -21.97346 -20.87987 -20.38241 -18.91140 -17.66694 -17.25741 -16.98776 -16.55022 -16.19216 -15.98716 -15.24090 -14.95094 -14.65910 -14.45187 -14.27399 -14.09675 -13.91318 -13.51120 -13.41262 -13.24905 -12.88571 -12.77748 -12.57607 -12.32216 -12.09046 -11.94314 -11.87037 -11.53868 -11.44928 -11.21332 -11.15761 -11.05045 -10.98567 -10.91512 -10.87060 -10.54422 -9.94625 -9.82076 -9.40660 -9.32055 -8.97253 -8.52300 -8.43508 -6.87970 -6.26378 -3.97383 2.47813 2.75945 2.90810 2.99777 3.24516 3.36248 3.54817 3.63234 4.30965 4.36464 4.44328 4.51223 4.56060 4.67322 4.67883 4.80935 4.87177 4.94167 5.09171 5.10807 5.12860 5.14885 5.21194 5.26564 5.28538 5.36264 5.40409 5.49078 5.55699 5.70036 5.72595 5.75324 5.81350 5.84362 5.89555 5.89850 5.97873 6.02726 6.04918 6.15207 6.30863 6.69190 7.27256 7.50629 7.96742 8.06559 8.43650 8.51082 9.20277 10.82762 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014531 B = 0.002878 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.476038 B = 9727.936219 C =10658.606401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.140 4.140 4 C 0.506 3.494 5 O -0.528 6.528 6 N -0.732 5.732 7 C 0.145 3.855 8 H 0.094 0.906 9 C -0.120 4.120 10 C -0.141 4.141 11 C 0.109 3.891 12 N -0.614 5.614 13 C 0.527 3.473 14 O -0.514 6.514 15 C -0.120 4.120 16 S -0.144 6.144 17 C -0.519 4.519 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.881 5.881 21 Si 0.856 3.144 22 H -0.267 1.267 23 H -0.235 1.235 24 H -0.275 1.275 25 C 0.117 3.883 26 C -0.136 4.136 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.397 0.603 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.270 0.730 44 H 0.093 0.907 45 H 0.061 0.939 46 H 0.067 0.933 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.284 11.749 13.235 29.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.180 4.180 4 C 0.292 3.708 5 O -0.404 6.404 6 N -0.384 5.384 7 C 0.041 3.959 8 H 0.112 0.888 9 C -0.158 4.158 10 C -0.180 4.180 11 C -0.015 4.015 12 N -0.349 5.349 13 C 0.314 3.686 14 O -0.389 6.389 15 C -0.271 4.271 16 S 0.082 5.918 17 C -0.667 4.667 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.518 5.518 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.159 1.159 24 H -0.200 1.200 25 C -0.006 4.006 26 C -0.175 4.175 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.231 0.769 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.104 0.896 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.080 0.920 44 H 0.112 0.888 45 H 0.080 0.920 46 H 0.086 0.914 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -22.907 9.235 13.592 28.192 hybrid contribution 0.106 1.294 -0.526 1.401 sum -22.801 10.530 13.066 28.311 Atomic orbital electron populations 1.21792 0.95509 1.02042 1.01630 1.21293 0.95197 0.94650 1.03819 1.21724 0.91771 1.00316 1.04151 1.20827 0.90342 0.83738 0.75847 1.90784 1.70362 1.31135 1.48085 1.46220 1.07168 1.08589 1.76374 1.20470 0.78990 0.99759 0.96716 0.88759 1.20682 0.97857 0.96442 1.00861 1.21273 0.94527 1.03218 0.98998 1.21607 0.99743 0.82647 0.97514 1.47690 1.45677 1.06888 1.34683 1.20393 0.80159 0.85225 0.82802 1.90698 1.63314 1.18888 1.65950 1.23354 1.00746 1.04659 0.98329 1.84846 1.56880 1.08573 1.41486 1.22307 1.29685 0.97421 1.17279 0.89422 1.24709 0.93694 0.99208 0.93698 1.69941 1.26953 1.36185 1.18710 0.86742 0.81536 0.85019 0.78635 1.19222 1.15863 1.19982 1.21604 0.89010 1.01370 0.88585 1.22099 0.97183 1.01058 0.97199 0.92343 0.92781 0.92722 0.91082 0.91180 0.89090 0.89041 0.76933 0.91621 0.91542 0.89952 0.90905 0.90465 0.89569 0.88586 0.88539 0.91986 0.88832 0.92028 0.91431 0.90386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.91 37.15 0.37 -0.54 16 2 C -0.11 -0.91 5.22 -26.73 -0.14 -1.05 16 3 C -0.14 -0.95 5.70 -27.88 -0.16 -1.10 16 4 C 0.51 5.36 7.65 -10.98 -0.08 5.28 16 5 O -0.53 -8.41 15.64 5.56 0.09 -8.32 16 6 N -0.73 -6.02 4.93 -55.07 -0.27 -6.29 16 7 C 0.15 1.47 2.06 -69.22 -0.14 1.32 16 8 H 0.09 1.40 6.91 -51.93 -0.36 1.04 16 9 C -0.12 -0.93 4.69 -29.79 -0.14 -1.07 16 10 C -0.14 -1.30 5.62 -28.58 -0.16 -1.46 16 11 C 0.11 1.11 5.17 -4.08 -0.02 1.09 16 12 N -0.61 -8.46 2.25 -172.75 -0.39 -8.84 16 13 C 0.53 9.91 7.64 -10.99 -0.08 9.83 16 14 O -0.51 -11.81 15.14 5.56 0.08 -11.72 16 15 C -0.12 -2.40 4.65 36.01 0.17 -2.23 16 16 S -0.14 -3.76 18.55 -107.50 -1.99 -5.75 16 17 C -0.52 -15.11 10.04 30.94 0.31 -14.80 16 18 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 19 C 0.10 2.83 5.50 -17.43 -0.10 2.73 16 20 N -0.88 -26.79 13.97 55.49 0.78 -26.02 16 21 Si 0.86 22.22 27.74 -169.99 -4.72 17.51 16 22 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.23 -6.13 6.74 56.52 0.38 -5.75 16 24 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 25 C 0.12 1.47 6.06 -3.13 -0.02 1.45 16 26 C -0.14 -1.30 5.38 -27.48 -0.15 -1.45 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.70 8.10 -51.92 -0.42 0.28 16 31 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 32 H 0.09 0.42 8.14 -51.92 -0.42 0.00 16 33 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.40 1.90 8.60 -40.82 -0.35 1.55 16 35 H 0.07 0.39 7.36 -51.93 -0.38 0.00 16 36 H 0.07 0.46 8.04 -51.93 -0.42 0.05 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.86 7.28 -51.93 -0.38 0.48 16 39 H 0.08 0.60 8.07 -51.93 -0.42 0.18 16 40 H 0.09 0.90 6.26 -51.93 -0.32 0.58 16 41 H 0.10 1.76 7.31 -51.91 -0.38 1.38 16 42 H 0.10 1.79 7.08 -51.92 -0.37 1.43 16 43 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 44 H 0.09 1.49 6.96 -51.92 -0.36 1.12 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.07 0.50 7.32 -51.93 -0.38 0.12 16 47 H 0.08 0.79 7.85 -51.93 -0.41 0.38 16 LS Contribution 383.03 15.07 5.77 5.77 Total: -1.00 -36.95 383.03 -8.90 -45.85 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -7.90 Total: -0.18 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -0.35 Total: -2.01 kcal Atomic # 7 Polarization: -41.27 SS G_CDS: 0.12 Total: -41.15 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: 0.17 Total: -20.04 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.72 Total: 17.51 kcal Atomic # 16 Polarization: -3.76 SS G_CDS: -1.99 Total: -5.75 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.95 -8.90 -45.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001065746257.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.787 kcal (2) G-P(sol) polarization free energy of solvation -36.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds