Wall clock time and date at job start Tue Mar 31 2020 15:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47479 * 2 1 4 4 C 1.50704 * 109.47255 * 180.02562 * 3 2 1 5 5 O 1.21275 * 119.99848 * 0.02562 * 4 3 2 6 6 N 1.34778 * 119.99981 * 180.02562 * 4 3 2 7 7 C 1.46497 * 120.00060 * 179.97438 * 6 4 3 8 8 H 1.09003 * 109.48744 * 34.95406 * 7 6 4 9 9 C 1.52563 * 109.48840 * 154.99806 * 7 6 4 10 10 C 1.47091 * 114.32846 * 205.00172 * 9 7 6 11 11 C 1.54872 * 110.32052 * 297.20500 * 10 9 7 12 12 N 1.44575 * 109.60039 * 71.26470 * 11 10 9 13 13 C 1.34774 * 118.64649 * 89.25066 * 12 11 10 14 14 O 1.21281 * 120.00138 * 179.97438 * 13 12 11 15 15 C 1.50701 * 119.99741 * 0.02562 * 13 12 11 16 16 S 1.81005 * 109.47173 * 179.97438 * 15 13 12 17 17 C 1.76189 * 100.00097 * 179.97438 * 16 15 13 18 18 H 1.07999 * 120.00127 * 0.02562 * 17 16 15 19 19 C 1.38805 * 120.00013 * 180.02562 * 17 16 15 20 20 N 1.31633 * 120.00034 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47174 * 270.00277 * 21 19 17 23 23 H 1.48501 * 109.47062 * 30.00228 * 21 19 17 24 24 H 1.48490 * 109.46901 * 150.00205 * 21 19 17 25 25 C 1.47604 * 122.70797 * 269.52997 * 12 11 10 26 26 C 1.50880 * 109.50739 * 274.89864 * 7 6 4 27 27 H 1.09001 * 109.47308 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46972 * 300.00003 * 1 2 3 29 29 H 1.09000 * 109.47204 * 59.99352 * 1 2 3 30 30 H 1.09007 * 109.47127 * 240.00525 * 2 1 3 31 31 H 1.09000 * 109.47204 * 120.00648 * 2 1 3 32 32 H 1.09007 * 109.46513 * 60.00149 * 3 2 1 33 33 H 1.09000 * 109.47432 * 300.00508 * 3 2 1 34 34 H 0.97003 * 119.99828 * 359.97438 * 6 4 3 35 35 H 1.09001 * 108.51352 * 83.75005 * 9 7 6 36 36 H 1.08996 * 108.51584 * 326.26043 * 9 7 6 37 37 H 1.08993 * 109.33303 * 176.94530 * 10 9 7 38 38 H 1.08997 * 109.32813 * 57.45924 * 10 9 7 39 39 H 1.08998 * 109.44596 * 311.21920 * 11 10 9 40 40 H 1.09005 * 109.44615 * 191.30491 * 11 10 9 41 41 H 1.09005 * 109.47318 * 59.99759 * 15 13 12 42 42 H 1.09002 * 109.47150 * 299.99724 * 15 13 12 43 43 H 0.97001 * 119.99662 * 179.97438 * 20 19 17 44 44 H 1.09008 * 108.94494 * 162.56750 * 25 12 11 45 45 H 1.09001 * 108.94688 * 281.18771 * 25 12 11 46 46 H 1.09000 * 109.36419 * 268.32352 * 26 7 6 47 47 H 1.08995 * 109.37099 * 28.07118 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4424 -0.0006 5 8 4.1534 0.3921 -0.0015 6 7 4.2210 2.6096 -0.0002 7 6 5.6860 2.6095 -0.0003 8 1 6.0496 1.7675 -0.5893 9 6 6.1950 3.9132 -0.6077 10 6 7.5422 3.8244 -1.1913 11 6 8.5814 3.4805 -0.0957 12 7 8.4083 2.1075 0.3230 13 6 9.0819 1.1421 -0.3332 14 8 8.9553 -0.0178 -0.0022 15 6 9.9933 1.5040 -1.4775 16 16 10.7478 0.0008 -2.1465 17 6 11.7321 0.6981 -3.4308 18 1 11.7303 1.7658 -3.5933 19 6 12.5098 -0.1249 -4.2337 20 7 13.2447 0.3960 -5.1935 21 14 12.5134 -1.9716 -3.9520 22 1 13.5832 -2.3225 -2.9838 23 1 11.1967 -2.3920 -3.4089 24 1 12.7630 -2.6681 -5.2395 25 6 7.5196 1.7190 1.4357 26 6 6.1899 2.4876 1.4167 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9562 0.8901 33 1 1.6767 1.9564 -0.8899 34 1 3.7360 3.4497 0.0001 35 1 6.2044 4.6769 0.1700 36 1 5.5002 4.2265 -1.3869 37 1 7.8016 4.7798 -1.6473 38 1 7.5537 3.0477 -1.9559 39 1 8.4395 4.1414 0.7593 40 1 9.5870 3.6143 -0.4945 41 1 10.7750 2.1749 -1.1212 42 1 9.4168 2.0000 -2.2583 43 1 13.7885 -0.1792 -5.7543 44 1 7.3121 0.6511 1.3665 45 1 8.0264 1.9189 2.3798 46 1 6.3389 3.4833 1.8342 47 1 5.4554 1.9503 2.0165 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001065746257.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:37 Heat of formation + Delta-G solvation = -114.700754 kcal Electronic energy + Delta-G solvation = -26316.862278 eV Core-core repulsion = 22624.072139 eV Total energy + Delta-G solvation = -3692.790140 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.66168 -40.69329 -38.69686 -36.17628 -35.27209 -34.69009 -33.99626 -33.21997 -30.69034 -28.95122 -27.88064 -27.43940 -25.94158 -23.31178 -22.77626 -21.71722 -21.13037 -20.35042 -19.47226 -18.30856 -18.01192 -17.59077 -17.29551 -17.09322 -16.74633 -16.50580 -15.90355 -15.49690 -15.34772 -15.16876 -15.01035 -14.91937 -14.55421 -14.26987 -13.96956 -13.90679 -13.61179 -13.39894 -13.34971 -13.04417 -12.91514 -12.80575 -12.68402 -12.65548 -12.30195 -12.05687 -12.00159 -11.88795 -11.68295 -11.65441 -11.62850 -11.19099 -10.92004 -10.83240 -10.53343 -10.17052 -9.66131 -9.03247 -8.53683 -6.24454 0.95303 1.28019 1.43628 1.49428 1.52851 1.67248 2.05938 2.20257 2.23131 2.67557 2.84416 3.48880 3.68323 3.79737 3.81346 3.96201 3.97872 4.06667 4.08515 4.11744 4.19079 4.31274 4.38751 4.46352 4.55828 4.61722 4.68392 4.70564 4.74486 4.79270 4.87751 4.90807 4.95884 5.10414 5.12516 5.21365 5.23855 5.25607 5.35528 5.43467 5.55652 5.61842 5.69325 6.09227 6.25148 6.61103 6.91979 7.08870 7.34578 8.58497 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014531 B = 0.002878 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.476038 B = 9727.936219 C =10658.606401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.114 4.114 3 C -0.129 4.129 4 C 0.498 3.502 5 O -0.594 6.594 6 N -0.713 5.713 7 C 0.144 3.856 8 H 0.038 0.962 9 C -0.116 4.116 10 C -0.138 4.138 11 C 0.097 3.903 12 N -0.595 5.595 13 C 0.523 3.477 14 O -0.568 6.568 15 C -0.101 4.101 16 S -0.188 6.188 17 C -0.524 4.524 18 H 0.066 0.934 19 C 0.048 3.952 20 N -0.914 5.914 21 Si 0.911 3.089 22 H -0.261 1.261 23 H -0.243 1.243 24 H -0.257 1.257 25 C 0.115 3.885 26 C -0.124 4.124 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.042 0.958 31 H 0.049 0.951 32 H 0.124 0.876 33 H 0.117 0.883 34 H 0.419 0.581 35 H 0.104 0.896 36 H 0.079 0.921 37 H 0.110 0.890 38 H 0.036 0.964 39 H 0.119 0.881 40 H 0.084 0.916 41 H 0.116 0.884 42 H 0.109 0.891 43 H 0.277 0.723 44 H 0.048 0.952 45 H 0.084 0.916 46 H 0.110 0.890 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.315 15.042 14.721 32.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.153 4.153 3 C -0.169 4.169 4 C 0.286 3.714 5 O -0.474 6.474 6 N -0.366 5.366 7 C 0.038 3.962 8 H 0.056 0.944 9 C -0.153 4.153 10 C -0.177 4.177 11 C -0.026 4.026 12 N -0.328 5.328 13 C 0.311 3.689 14 O -0.447 6.447 15 C -0.252 4.252 16 S 0.039 5.961 17 C -0.671 4.671 18 H 0.084 0.916 19 C -0.157 4.157 20 N -0.552 5.552 21 Si 0.733 3.267 22 H -0.186 1.186 23 H -0.167 1.167 24 H -0.181 1.181 25 C -0.007 4.007 26 C -0.163 4.163 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.142 0.858 33 H 0.135 0.865 34 H 0.257 0.743 35 H 0.122 0.878 36 H 0.097 0.903 37 H 0.129 0.871 38 H 0.055 0.945 39 H 0.137 0.863 40 H 0.102 0.898 41 H 0.134 0.866 42 H 0.127 0.873 43 H 0.087 0.913 44 H 0.067 0.933 45 H 0.102 0.898 46 H 0.128 0.872 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -24.974 12.639 15.081 31.794 hybrid contribution 0.667 0.415 -0.936 1.221 sum -24.307 13.053 14.146 31.005 Atomic orbital electron populations 1.21745 0.93334 1.02268 1.02958 1.21277 0.97004 0.95482 1.01511 1.21751 0.88573 0.99694 1.06845 1.21609 0.92005 0.83264 0.74495 1.90772 1.71869 1.33573 1.51193 1.46044 1.06531 1.09067 1.74954 1.20376 0.80070 0.99281 0.96442 0.94395 1.20652 0.96904 0.95508 1.02250 1.21276 0.95266 1.03317 0.97821 1.22036 1.00196 0.80735 0.99611 1.47693 1.43925 1.07528 1.33663 1.20241 0.80517 0.85381 0.82782 1.90679 1.65360 1.21136 1.67526 1.23301 1.01340 1.01436 0.99079 1.84862 1.57128 1.13111 1.41032 1.22401 1.30038 0.96552 1.18126 0.91594 1.25494 0.93487 1.03180 0.93574 1.70003 1.27777 1.37844 1.19556 0.85921 0.81145 0.80395 0.79254 1.18587 1.16726 1.18128 1.21711 0.90735 0.99514 0.88733 1.22045 0.94820 1.02504 0.96923 0.92805 0.91152 0.91556 0.93877 0.93256 0.85805 0.86478 0.74285 0.87795 0.90282 0.87140 0.94512 0.86254 0.89760 0.86619 0.87289 0.91326 0.93319 0.89770 0.87200 0.91079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.91 71.98 0.71 -0.80 16 2 C -0.11 -1.89 5.22 30.59 0.16 -1.73 16 3 C -0.13 -1.50 5.70 29.85 0.17 -1.33 16 4 C 0.50 10.37 7.65 87.66 0.67 11.04 16 5 O -0.59 -20.26 15.64 -3.01 -0.05 -20.31 16 6 N -0.71 -10.22 4.93 -446.52 -2.20 -12.42 16 7 C 0.14 2.68 2.06 44.16 0.09 2.77 16 8 H 0.04 1.17 6.91 -2.39 -0.02 1.16 16 9 C -0.12 -1.32 4.69 28.61 0.13 -1.19 16 10 C -0.14 -2.14 5.62 29.40 0.17 -1.98 16 11 C 0.10 1.66 5.17 87.38 0.45 2.11 16 12 N -0.59 -15.93 2.25 -818.84 -1.84 -17.77 16 13 C 0.52 20.21 7.64 87.66 0.67 20.88 16 14 O -0.57 -27.53 15.14 -3.03 -0.05 -27.58 16 15 C -0.10 -4.07 4.65 71.24 0.33 -3.74 16 16 S -0.19 -10.06 18.55 -56.49 -1.05 -11.10 16 17 C -0.52 -31.18 10.04 67.96 0.68 -30.50 16 18 H 0.07 4.08 8.03 -2.91 -0.02 4.06 16 19 C 0.05 2.89 5.50 84.86 0.47 3.36 16 20 N -0.91 -56.24 13.97 21.65 0.30 -55.94 16 21 Si 0.91 46.60 27.74 68.60 1.90 48.50 16 22 H -0.26 -13.00 7.11 99.48 0.71 -12.30 16 23 H -0.24 -12.69 6.74 99.48 0.67 -12.02 16 24 H -0.26 -12.27 7.11 99.48 0.71 -11.56 16 25 C 0.12 2.83 6.06 86.37 0.52 3.35 16 26 C -0.12 -2.08 5.38 30.11 0.16 -1.92 16 27 H 0.05 0.60 8.14 -2.39 -0.02 0.59 16 28 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 29 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.04 0.92 8.10 -2.38 -0.02 0.91 16 31 H 0.05 0.99 8.10 -2.39 -0.02 0.97 16 32 H 0.12 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.42 2.29 8.60 -92.71 -0.80 1.50 16 35 H 0.10 0.51 7.36 -2.39 -0.02 0.49 16 36 H 0.08 0.77 8.04 -2.39 -0.02 0.75 16 37 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.04 0.85 7.28 -2.39 -0.02 0.83 16 39 H 0.12 1.16 8.07 -2.39 -0.02 1.14 16 40 H 0.08 1.53 6.26 -2.38 -0.01 1.51 16 41 H 0.12 4.19 7.31 -2.39 -0.02 4.18 16 42 H 0.11 4.11 7.08 -2.39 -0.02 4.09 16 43 H 0.28 15.78 8.31 -92.71 -0.77 15.01 16 44 H 0.05 1.66 6.96 -2.38 -0.02 1.64 16 45 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.11 0.98 7.32 -2.39 -0.02 0.96 16 47 H 0.07 1.34 7.85 -2.39 -0.02 1.32 16 Total: -1.00 -88.31 383.03 2.54 -85.77 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: 0.13 Total: 10.50 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: 5.39 Total: 0.34 kcal Atomic # 7 Polarization: -82.38 SS G_CDS: -3.74 Total: -86.12 kcal Atomic # 8 Polarization: -47.79 SS G_CDS: -0.09 Total: -47.89 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 1.90 Total: 48.50 kcal Atomic # 16 Polarization: -10.06 SS G_CDS: -1.05 Total: -11.10 kcal Total: -88.31 2.54 -85.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001065746257.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.929 kcal (2) G-P(sol) polarization free energy of solvation -88.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds