Wall clock time and date at job start Tue Mar 31 2020 15:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47166 * 2 1 4 4 C 1.50702 * 109.47245 * 120.00147 * 2 1 3 5 5 O 1.21283 * 120.00262 * 240.00295 * 4 2 1 6 6 N 1.34777 * 119.99928 * 59.72201 * 4 2 1 7 7 C 1.46499 * 120.00199 * 180.27479 * 6 4 2 8 8 H 1.09004 * 108.44728 * 327.31683 * 7 6 4 9 9 C 1.52567 * 108.51543 * 209.76828 * 7 6 4 10 10 C 1.50880 * 109.35606 * 153.73481 * 9 7 6 11 11 C 1.53946 * 110.09615 * 91.88965 * 10 9 7 12 12 N 1.47608 * 112.14282 * 319.43281 * 11 10 9 13 13 C 1.34770 * 118.64847 * 137.84739 * 12 11 10 14 14 O 1.21276 * 120.00310 * 180.02562 * 13 12 11 15 15 C 1.50704 * 119.99572 * 0.02562 * 13 12 11 16 16 S 1.81004 * 109.46858 * 180.02562 * 15 13 12 17 17 C 1.76199 * 99.99915 * 180.02562 * 16 15 13 18 18 H 1.08002 * 119.99994 * 359.97438 * 17 16 15 19 19 C 1.38798 * 120.00329 * 180.02562 * 17 16 15 20 20 N 1.31638 * 119.99805 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00472 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47183 * 90.00042 * 21 19 17 23 23 H 1.48501 * 109.47472 * 210.00030 * 21 19 17 24 24 H 1.48497 * 109.47255 * 330.00087 * 21 19 17 25 25 C 1.44581 * 122.70670 * 317.86802 * 12 11 10 26 26 C 1.47101 * 108.51234 * 85.00095 * 7 6 4 27 27 H 1.08994 * 109.47175 * 59.99981 * 1 2 3 28 28 H 1.09001 * 109.46739 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46783 * 299.99412 * 1 2 3 30 30 H 1.09004 * 109.47131 * 240.00036 * 2 1 3 31 31 H 1.09000 * 109.47234 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47089 * 300.00072 * 3 2 1 33 33 H 1.09004 * 109.47066 * 59.99996 * 3 2 1 34 34 H 0.97000 * 120.00317 * 0.28382 * 6 4 2 35 35 H 1.08994 * 109.49246 * 273.70159 * 9 7 6 36 36 H 1.08995 * 109.48699 * 33.77299 * 9 7 6 37 37 H 1.09004 * 109.37127 * 331.69105 * 10 9 7 38 38 H 1.09003 * 109.26125 * 212.01300 * 10 9 7 39 39 H 1.08998 * 108.94863 * 198.74762 * 11 10 9 40 40 H 1.08994 * 108.88232 * 80.06856 * 11 10 9 41 41 H 1.09002 * 109.47234 * 300.00014 * 15 13 12 42 42 H 1.08997 * 109.47229 * 60.00236 * 15 13 12 43 43 H 0.96993 * 120.00127 * 179.97438 * 20 19 17 44 44 H 1.08996 * 109.45565 * 330.68600 * 25 12 11 45 45 H 1.08997 * 109.44542 * 210.76124 * 25 12 11 46 46 H 1.09000 * 109.32665 * 304.32644 * 26 7 6 47 47 H 1.08999 * 109.32294 * 63.96838 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7296 -0.1211 2.0289 6 7 1.7022 -1.9991 1.4465 7 6 2.1855 -2.6880 2.6457 8 1 3.1674 -2.2890 2.9005 9 6 2.3375 -4.1717 2.3240 10 6 3.3836 -4.7749 3.2286 11 6 2.7217 -5.3442 4.4966 12 7 1.6543 -4.4635 5.0102 13 6 0.5067 -5.0231 5.4417 14 8 -0.3868 -4.3227 5.8682 15 6 0.3337 -6.5195 5.3941 16 16 -1.3007 -6.9585 6.0363 17 6 -1.2340 -8.7114 5.8698 18 1 -0.3499 -9.1822 5.4659 19 6 -2.3180 -9.4870 6.2568 20 7 -3.3962 -8.9131 6.7477 21 14 -2.2477 -11.3452 6.0797 22 1 -1.6950 -11.9404 7.3229 23 1 -3.6159 -11.8723 5.8444 24 1 -1.3761 -11.7004 4.9310 25 6 1.7889 -3.0252 5.0692 26 6 1.2623 -2.3998 3.7540 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.1446 -2.4706 0.8080 35 1 1.3850 -4.6774 2.4816 36 1 2.6442 -4.2888 1.2847 37 1 4.1041 -4.0071 3.5105 38 1 3.8983 -5.5764 2.6986 39 1 3.4818 -5.4662 5.2683 40 1 2.2944 -6.3195 4.2639 41 1 0.4230 -6.8630 4.3635 42 1 1.1032 -6.9937 6.0032 43 1 -4.1539 -9.4550 7.0178 44 1 2.8390 -2.7640 5.2003 45 1 1.2120 -2.6409 5.9103 46 1 1.1732 -1.3205 3.8779 47 1 0.2823 -2.8187 3.5253 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001065847637.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:43 Heat of formation + Delta-G solvation = -86.487881 kcal Electronic energy + Delta-G solvation = -26309.161807 eV Core-core repulsion = 22617.595070 eV Total energy + Delta-G solvation = -3691.566738 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.73060 -39.70088 -37.52797 -35.11061 -34.77387 -32.84014 -32.44067 -31.99538 -29.25601 -27.46409 -26.65459 -25.58402 -25.23145 -23.41133 -21.97362 -20.90165 -20.01759 -18.85486 -17.73200 -17.46052 -16.86643 -16.47543 -15.95716 -15.61765 -15.44696 -14.82054 -14.59888 -14.57442 -14.08690 -14.03010 -13.83170 -13.42635 -13.39167 -13.01872 -12.77159 -12.66166 -12.60420 -12.43228 -12.27025 -11.79595 -11.67133 -11.52315 -11.48016 -11.40858 -11.15521 -11.07631 -11.05651 -11.02582 -10.86122 -10.74672 -9.90296 -9.81083 -9.33544 -9.31748 -9.08085 -8.48518 -8.23106 -6.51544 -6.23049 -3.93682 2.43697 2.90289 2.96822 3.07389 3.20753 3.24972 3.28812 3.58930 4.18746 4.29033 4.37690 4.51618 4.59498 4.61841 4.72143 4.89169 4.97032 5.00728 5.07443 5.11988 5.17125 5.25530 5.35643 5.37149 5.44336 5.46606 5.49275 5.54237 5.57789 5.60498 5.72311 5.78748 5.79628 5.84906 5.90317 5.92777 5.99234 6.01960 6.10281 6.16225 6.33339 6.79390 7.27805 7.51122 7.57971 8.01929 8.33539 8.57929 9.22181 10.84340 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020380 B = 0.002484 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.587478 B =11271.270916 C =11575.937451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.116 4.116 3 C -0.132 4.132 4 C 0.516 3.484 5 O -0.541 6.541 6 N -0.730 5.730 7 C 0.151 3.849 8 H 0.082 0.918 9 C -0.125 4.125 10 C -0.128 4.128 11 C 0.106 3.894 12 N -0.614 5.614 13 C 0.528 3.472 14 O -0.514 6.514 15 C -0.151 4.151 16 S -0.062 6.062 17 C -0.535 4.535 18 H 0.072 0.928 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.125 3.875 26 C -0.146 4.146 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.095 0.905 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.399 0.601 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.268 0.732 44 H 0.072 0.928 45 H 0.087 0.913 46 H 0.076 0.924 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.228 13.802 -14.905 24.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.137 4.137 3 C -0.190 4.190 4 C 0.302 3.698 5 O -0.418 6.418 6 N -0.381 5.381 7 C 0.047 3.953 8 H 0.100 0.900 9 C -0.163 4.163 10 C -0.166 4.166 11 C -0.017 4.017 12 N -0.350 5.350 13 C 0.316 3.684 14 O -0.388 6.388 15 C -0.302 4.302 16 S 0.164 5.836 17 C -0.683 4.683 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.197 1.197 25 C 0.001 3.999 26 C -0.186 4.186 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.113 0.887 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.233 0.767 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.083 0.917 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.091 0.909 45 H 0.106 0.894 46 H 0.094 0.906 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 13.249 15.257 -13.616 24.366 hybrid contribution 0.818 -2.330 -0.986 2.659 sum 14.067 12.927 -14.601 24.046 Atomic orbital electron populations 1.21798 0.92748 1.02673 1.03074 1.21322 0.97700 0.98096 0.96622 1.21606 1.01684 0.93575 1.02135 1.20720 0.79767 0.81736 0.87581 1.90693 1.38016 1.65788 1.47296 1.46358 1.53868 1.12464 1.25400 1.20022 0.98851 0.91832 0.84598 0.89987 1.21383 1.00911 0.94278 0.99779 1.21679 0.97889 1.01359 0.95721 1.22007 0.90299 0.94041 0.95397 1.47749 1.16416 1.06347 1.64509 1.20388 0.81205 0.90246 0.76543 1.90697 1.39906 1.63707 1.44485 1.23582 1.07576 0.94002 1.05010 1.85419 1.09730 1.06357 1.82060 1.22850 1.04636 0.91457 1.49336 0.90982 1.24994 0.94540 0.99512 0.94561 1.70019 1.04565 1.35995 1.39681 0.86175 0.77606 0.83133 0.78625 1.20265 1.20761 1.19714 1.21211 1.01167 0.80065 0.97489 1.21588 1.00124 1.01710 0.95143 0.91365 0.92046 0.91899 0.88682 0.92036 0.92101 0.91886 0.76674 0.90541 0.91052 0.91257 0.90046 0.91652 0.89362 0.89365 0.89330 0.92186 0.90913 0.89446 0.90575 0.90995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.09 37.16 0.34 -0.56 16 2 C -0.12 -0.83 3.26 -91.77 -0.30 -1.13 16 3 C -0.13 -0.99 8.48 37.16 0.32 -0.67 16 4 C 0.52 5.27 7.00 -10.98 -0.08 5.19 16 5 O -0.54 -7.59 15.48 5.55 0.09 -7.51 16 6 N -0.73 -6.42 4.77 -56.81 -0.27 -6.70 16 7 C 0.15 1.50 1.96 -70.98 -0.14 1.36 16 8 H 0.08 0.91 6.65 -51.93 -0.35 0.56 16 9 C -0.13 -1.08 5.00 -28.02 -0.14 -1.22 16 10 C -0.13 -1.01 5.71 -27.30 -0.16 -1.16 16 11 C 0.11 1.07 5.95 -2.94 -0.02 1.06 16 12 N -0.61 -8.34 2.24 -172.54 -0.39 -8.73 16 13 C 0.53 9.77 7.63 -10.99 -0.08 9.69 16 14 O -0.51 -11.55 15.30 5.56 0.09 -11.46 16 15 C -0.15 -2.99 4.48 36.01 0.16 -2.83 16 16 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 17 C -0.53 -15.02 9.50 30.94 0.29 -14.72 16 18 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 19 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 20 N -0.87 -25.99 13.22 55.49 0.73 -25.25 16 21 Si 0.92 21.17 29.55 -169.99 -5.02 16.14 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 25 C 0.13 1.57 5.38 -4.09 -0.02 1.55 16 26 C -0.15 -1.75 5.19 -28.58 -0.15 -1.90 16 27 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.34 7.56 -51.93 -0.39 -0.05 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.51 8.10 -51.93 -0.42 0.08 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 34 H 0.40 2.66 8.02 -40.82 -0.33 2.33 16 35 H 0.08 0.80 7.48 -51.93 -0.39 0.41 16 36 H 0.07 0.51 8.05 -51.93 -0.42 0.10 16 37 H 0.07 0.52 7.31 -51.93 -0.38 0.14 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.09 0.93 5.82 -51.93 -0.30 0.63 16 41 H 0.09 1.60 7.41 -51.91 -0.38 1.21 16 42 H 0.09 1.63 8.03 -51.92 -0.42 1.22 16 43 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.07 0.77 8.06 -51.93 -0.42 0.35 16 45 H 0.09 1.27 7.30 -51.93 -0.38 0.89 16 46 H 0.08 0.98 7.95 -51.93 -0.41 0.57 16 47 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 385.52 15.07 5.81 5.81 Total: -1.00 -35.36 385.52 -9.16 -44.52 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -7.91 Total: 0.46 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -0.07 Total: -3.39 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: 0.08 Total: -40.67 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: 0.17 Total: -18.97 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.36 -9.16 -44.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001065847637.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.972 kcal (2) G-P(sol) polarization free energy of solvation -35.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds