Wall clock time and date at job start Tue Mar 31 2020 15:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47166 * 2 1 4 4 C 1.50702 * 109.47245 * 120.00147 * 2 1 3 5 5 O 1.21283 * 120.00262 * 240.00295 * 4 2 1 6 6 N 1.34777 * 119.99928 * 59.72201 * 4 2 1 7 7 C 1.46499 * 120.00199 * 180.27479 * 6 4 2 8 8 H 1.09004 * 108.44728 * 327.31683 * 7 6 4 9 9 C 1.52567 * 108.51543 * 209.76828 * 7 6 4 10 10 C 1.50880 * 109.35606 * 153.73481 * 9 7 6 11 11 C 1.53946 * 110.09615 * 91.88965 * 10 9 7 12 12 N 1.47608 * 112.14282 * 319.43281 * 11 10 9 13 13 C 1.34770 * 118.64847 * 137.84739 * 12 11 10 14 14 O 1.21276 * 120.00310 * 180.02562 * 13 12 11 15 15 C 1.50704 * 119.99572 * 0.02562 * 13 12 11 16 16 S 1.81004 * 109.46858 * 180.02562 * 15 13 12 17 17 C 1.76199 * 99.99915 * 180.02562 * 16 15 13 18 18 H 1.08002 * 119.99994 * 359.97438 * 17 16 15 19 19 C 1.38798 * 120.00329 * 180.02562 * 17 16 15 20 20 N 1.31638 * 119.99805 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00472 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47183 * 90.00042 * 21 19 17 23 23 H 1.48501 * 109.47472 * 210.00030 * 21 19 17 24 24 H 1.48497 * 109.47255 * 330.00087 * 21 19 17 25 25 C 1.44581 * 122.70670 * 317.86802 * 12 11 10 26 26 C 1.47101 * 108.51234 * 85.00095 * 7 6 4 27 27 H 1.08994 * 109.47175 * 59.99981 * 1 2 3 28 28 H 1.09001 * 109.46739 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46783 * 299.99412 * 1 2 3 30 30 H 1.09004 * 109.47131 * 240.00036 * 2 1 3 31 31 H 1.09000 * 109.47234 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47089 * 300.00072 * 3 2 1 33 33 H 1.09004 * 109.47066 * 59.99996 * 3 2 1 34 34 H 0.97000 * 120.00317 * 0.28382 * 6 4 2 35 35 H 1.08994 * 109.49246 * 273.70159 * 9 7 6 36 36 H 1.08995 * 109.48699 * 33.77299 * 9 7 6 37 37 H 1.09004 * 109.37127 * 331.69105 * 10 9 7 38 38 H 1.09003 * 109.26125 * 212.01300 * 10 9 7 39 39 H 1.08998 * 108.94863 * 198.74762 * 11 10 9 40 40 H 1.08994 * 108.88232 * 80.06856 * 11 10 9 41 41 H 1.09002 * 109.47234 * 300.00014 * 15 13 12 42 42 H 1.08997 * 109.47229 * 60.00236 * 15 13 12 43 43 H 0.96993 * 120.00127 * 179.97438 * 20 19 17 44 44 H 1.08996 * 109.45565 * 330.68600 * 25 12 11 45 45 H 1.08997 * 109.44542 * 210.76124 * 25 12 11 46 46 H 1.09000 * 109.32665 * 304.32644 * 26 7 6 47 47 H 1.08999 * 109.32294 * 63.96838 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7296 -0.1211 2.0289 6 7 1.7022 -1.9991 1.4465 7 6 2.1855 -2.6880 2.6457 8 1 3.1674 -2.2890 2.9005 9 6 2.3375 -4.1717 2.3240 10 6 3.3836 -4.7749 3.2286 11 6 2.7217 -5.3442 4.4966 12 7 1.6543 -4.4635 5.0102 13 6 0.5067 -5.0231 5.4417 14 8 -0.3868 -4.3227 5.8682 15 6 0.3337 -6.5195 5.3941 16 16 -1.3007 -6.9585 6.0363 17 6 -1.2340 -8.7114 5.8698 18 1 -0.3499 -9.1822 5.4659 19 6 -2.3180 -9.4870 6.2568 20 7 -3.3962 -8.9131 6.7477 21 14 -2.2477 -11.3452 6.0797 22 1 -1.6950 -11.9404 7.3229 23 1 -3.6159 -11.8723 5.8444 24 1 -1.3761 -11.7004 4.9310 25 6 1.7889 -3.0252 5.0692 26 6 1.2623 -2.3998 3.7540 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.1446 -2.4706 0.8080 35 1 1.3850 -4.6774 2.4816 36 1 2.6442 -4.2888 1.2847 37 1 4.1041 -4.0071 3.5105 38 1 3.8983 -5.5764 2.6986 39 1 3.4818 -5.4662 5.2683 40 1 2.2944 -6.3195 4.2639 41 1 0.4230 -6.8630 4.3635 42 1 1.1032 -6.9937 6.0032 43 1 -4.1539 -9.4550 7.0178 44 1 2.8390 -2.7640 5.2003 45 1 1.2120 -2.6409 5.9103 46 1 1.1732 -1.3205 3.8779 47 1 0.2823 -2.8187 3.5253 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001065847637.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:42 Heat of formation + Delta-G solvation = -109.876322 kcal Electronic energy + Delta-G solvation = -26310.176006 eV Core-core repulsion = 22617.595070 eV Total energy + Delta-G solvation = -3692.580937 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.70517 -40.79158 -38.63717 -36.15832 -35.45559 -34.57537 -33.73431 -33.02325 -30.66872 -28.07177 -27.75468 -27.47829 -26.20885 -24.23746 -22.98317 -21.72850 -20.77124 -20.31097 -19.36219 -18.30258 -18.10081 -17.54933 -17.06547 -16.87289 -16.66338 -16.37142 -15.96745 -15.43887 -15.29259 -14.94661 -14.91969 -14.55260 -14.51951 -14.28874 -13.78852 -13.69722 -13.55388 -13.21725 -13.18493 -13.14460 -12.88775 -12.88066 -12.63476 -12.47573 -12.41000 -12.07584 -12.05319 -11.98752 -11.84897 -11.73451 -11.63135 -11.13425 -10.83702 -10.71818 -10.24239 -10.16545 -9.64249 -8.66438 -8.33658 -6.11906 1.27290 1.43148 1.47508 1.57142 1.58219 1.65342 2.12351 2.21250 2.28503 3.00547 3.25172 3.51067 3.63651 3.73321 3.88427 3.98211 4.01831 4.05233 4.07157 4.14069 4.25171 4.32779 4.39853 4.45580 4.49918 4.59817 4.65550 4.73685 4.75017 4.86708 4.91698 4.92656 4.96976 5.02024 5.08341 5.13819 5.20618 5.28230 5.30782 5.32316 5.42709 5.52518 5.68208 6.20595 6.25792 6.55918 7.07595 7.17595 7.26347 8.75538 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020380 B = 0.002484 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.587478 B =11271.270916 C =11575.937451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.110 4.110 3 C -0.132 4.132 4 C 0.510 3.490 5 O -0.584 6.584 6 N -0.721 5.721 7 C 0.154 3.846 8 H 0.078 0.922 9 C -0.120 4.120 10 C -0.121 4.121 11 C 0.095 3.905 12 N -0.596 5.596 13 C 0.527 3.473 14 O -0.565 6.565 15 C -0.122 4.122 16 S -0.157 6.157 17 C -0.542 4.542 18 H 0.084 0.916 19 C 0.012 3.988 20 N -0.912 5.912 21 Si 0.998 3.002 22 H -0.269 1.269 23 H -0.279 1.279 24 H -0.256 1.256 25 C 0.124 3.876 26 C -0.133 4.133 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.043 0.957 30 H 0.123 0.877 31 H 0.051 0.949 32 H 0.084 0.916 33 H 0.042 0.958 34 H 0.411 0.589 35 H 0.058 0.942 36 H 0.094 0.906 37 H 0.078 0.922 38 H 0.109 0.891 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.110 0.890 42 H 0.107 0.893 43 H 0.270 0.730 44 H 0.102 0.898 45 H 0.062 0.938 46 H 0.062 0.938 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.678 12.275 -17.339 27.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.132 4.132 3 C -0.189 4.189 4 C 0.298 3.702 5 O -0.464 6.464 6 N -0.372 5.372 7 C 0.049 3.951 8 H 0.096 0.904 9 C -0.158 4.158 10 C -0.159 4.159 11 C -0.026 4.026 12 N -0.329 5.329 13 C 0.315 3.685 14 O -0.444 6.444 15 C -0.273 4.273 16 S 0.071 5.929 17 C -0.690 4.690 18 H 0.102 0.898 19 C -0.193 4.193 20 N -0.549 5.549 21 Si 0.820 3.180 22 H -0.194 1.194 23 H -0.204 1.204 24 H -0.179 1.179 25 C 0.000 4.000 26 C -0.173 4.173 27 H 0.106 0.894 28 H 0.087 0.913 29 H 0.063 0.937 30 H 0.141 0.859 31 H 0.070 0.930 32 H 0.103 0.897 33 H 0.061 0.939 34 H 0.248 0.752 35 H 0.077 0.923 36 H 0.112 0.888 37 H 0.097 0.903 38 H 0.127 0.873 39 H 0.104 0.896 40 H 0.107 0.893 41 H 0.128 0.872 42 H 0.125 0.875 43 H 0.079 0.921 44 H 0.120 0.880 45 H 0.081 0.919 46 H 0.081 0.919 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 15.742 13.721 -16.094 26.364 hybrid contribution 0.145 -1.738 -0.252 1.762 sum 15.887 11.983 -16.345 25.752 Atomic orbital electron populations 1.21803 0.91966 1.03180 1.03129 1.21369 0.98159 0.97650 0.95973 1.21609 1.01054 0.93986 1.02296 1.21338 0.78981 0.81843 0.88041 1.90672 1.40099 1.66709 1.48961 1.46298 1.53553 1.12245 1.25134 1.19935 0.97746 0.93122 0.84256 0.90403 1.21361 1.00437 0.92585 1.01447 1.21688 0.97486 1.02403 0.94303 1.22377 0.89611 0.93364 0.97285 1.47721 1.15506 1.07052 1.62665 1.20236 0.82086 0.89524 0.76697 1.90683 1.42090 1.64374 1.47232 1.23397 1.02866 0.95197 1.05863 1.85642 1.16282 1.07586 1.83423 1.23183 1.05218 0.91387 1.49227 0.89781 1.26141 0.93933 1.05308 0.93881 1.70193 1.05536 1.38194 1.40973 0.84954 0.77925 0.75860 0.79249 1.19415 1.20440 1.17947 1.21281 1.02415 0.79317 0.96953 1.21441 0.99481 1.00503 0.95871 0.89428 0.91339 0.93740 0.85937 0.93015 0.89747 0.93883 0.75217 0.92334 0.88777 0.90294 0.87303 0.89623 0.89339 0.87213 0.87504 0.92063 0.87986 0.91939 0.91944 0.93390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.09 71.98 0.65 -0.91 16 2 C -0.11 -1.40 3.26 -11.54 -0.04 -1.43 16 3 C -0.13 -1.85 8.48 71.98 0.61 -1.24 16 4 C 0.51 10.00 7.00 87.66 0.61 10.62 16 5 O -0.58 -16.46 15.48 -3.04 -0.05 -16.51 16 6 N -0.72 -11.72 4.77 -452.03 -2.16 -13.88 16 7 C 0.15 2.84 1.96 43.01 0.08 2.92 16 8 H 0.08 1.58 6.65 -2.38 -0.02 1.56 16 9 C -0.12 -1.74 5.00 29.76 0.15 -1.59 16 10 C -0.12 -1.43 5.71 30.22 0.17 -1.25 16 11 C 0.09 1.64 5.95 86.49 0.51 2.15 16 12 N -0.60 -15.56 2.24 -818.20 -1.83 -17.39 16 13 C 0.53 19.63 7.63 87.66 0.67 20.30 16 14 O -0.57 -26.61 15.30 -3.02 -0.05 -26.66 16 15 C -0.12 -4.77 4.48 71.24 0.32 -4.45 16 16 S -0.16 -8.66 20.57 -56.49 -1.16 -9.82 16 17 C -0.54 -30.53 9.50 67.95 0.65 -29.88 16 18 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 19 C 0.01 0.67 5.49 84.86 0.47 1.14 16 20 N -0.91 -55.90 13.22 21.65 0.29 -55.61 16 21 Si 1.00 42.99 29.55 68.60 2.03 45.02 16 22 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 23 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 24 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 25 C 0.12 3.10 5.38 87.37 0.47 3.57 16 26 C -0.13 -3.24 5.19 29.40 0.15 -3.09 16 27 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.07 0.65 7.56 -2.39 -0.02 0.63 16 29 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.12 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.05 0.82 8.10 -2.39 -0.02 0.80 16 32 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.04 0.76 8.10 -2.38 -0.02 0.75 16 34 H 0.41 4.67 8.02 -92.71 -0.74 3.93 16 35 H 0.06 1.10 7.48 -2.39 -0.02 1.08 16 36 H 0.09 0.98 8.05 -2.39 -0.02 0.96 16 37 H 0.08 0.86 7.31 -2.38 -0.02 0.84 16 38 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.09 1.56 5.82 -2.39 -0.01 1.55 16 41 H 0.11 3.80 7.41 -2.39 -0.02 3.78 16 42 H 0.11 3.78 8.03 -2.40 -0.02 3.76 16 43 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 44 H 0.10 1.98 8.06 -2.39 -0.02 1.96 16 45 H 0.06 1.90 7.30 -2.39 -0.02 1.88 16 46 H 0.06 1.69 7.95 -2.39 -0.02 1.67 16 47 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -81.41 385.52 2.77 -78.65 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: 0.21 Total: 19.34 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: 5.48 Total: -3.14 kcal Atomic # 7 Polarization: -83.18 SS G_CDS: -3.70 Total: -86.88 kcal Atomic # 8 Polarization: -43.08 SS G_CDS: -0.09 Total: -43.17 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Atomic # 16 Polarization: -8.66 SS G_CDS: -1.16 Total: -9.82 kcal Total: -81.41 2.77 -78.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001065847637.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.228 kcal (2) G-P(sol) polarization free energy of solvation -81.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds