Wall clock time and date at job start Tue Mar 31 2020 15:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47118 * 2 1 4 4 C 1.50702 * 109.47159 * 179.97438 * 3 2 1 5 5 O 1.21283 * 120.00262 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99928 * 179.72352 * 4 3 2 7 7 C 1.44582 * 118.64445 * 0.28047 * 6 4 3 8 8 C 1.54860 * 109.60235 * 89.24652 * 7 6 4 9 9 C 1.47104 * 110.32234 * 71.26681 * 8 7 6 10 10 C 1.52566 * 114.32603 * 297.19982 * 9 8 7 11 11 H 1.09005 * 109.49110 * 325.04766 * 10 9 8 12 12 N 1.46497 * 109.49084 * 204.97784 * 10 9 8 13 13 C 1.34774 * 120.00232 * 155.00442 * 12 10 9 14 14 O 1.21286 * 120.00037 * 359.97438 * 13 12 10 15 15 C 1.50702 * 120.00198 * 179.97438 * 13 12 10 16 16 S 1.80997 * 109.47054 * 179.97438 * 15 13 12 17 17 C 1.76206 * 99.99883 * 180.02562 * 16 15 13 18 18 H 1.07995 * 119.99732 * 359.97438 * 17 16 15 19 19 C 1.38796 * 119.99833 * 180.02562 * 17 16 15 20 20 N 1.31630 * 120.00287 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99786 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47418 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47426 * 119.99986 * 21 19 17 24 24 H 1.48498 * 109.47370 * 239.99656 * 21 19 17 25 25 C 1.50886 * 109.36035 * 85.01020 * 10 9 8 26 26 C 1.47605 * 118.64625 * 180.02562 * 6 4 3 27 27 H 1.09001 * 109.47062 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46965 * 299.99512 * 1 2 3 29 29 H 1.09003 * 109.47184 * 60.00331 * 1 2 3 30 30 H 1.09004 * 109.47131 * 240.00065 * 2 1 3 31 31 H 1.09000 * 109.47504 * 120.00369 * 2 1 3 32 32 H 1.09004 * 109.47066 * 60.00025 * 3 2 1 33 33 H 1.08994 * 109.47405 * 299.99855 * 3 2 1 34 34 H 1.08998 * 109.45001 * 209.28844 * 7 6 4 35 35 H 1.08996 * 109.44911 * 329.20982 * 7 6 4 36 36 H 1.08996 * 109.33265 * 191.52593 * 8 7 6 37 37 H 1.09002 * 109.32774 * 311.00787 * 8 7 6 38 38 H 1.09001 * 108.51077 * 58.45284 * 9 8 7 39 39 H 1.09001 * 108.51245 * 175.94887 * 9 8 7 40 40 H 0.97000 * 119.99849 * 334.99303 * 12 10 9 41 41 H 1.08995 * 109.46881 * 299.99793 * 15 13 12 42 42 H 1.08998 * 109.46774 * 59.99478 * 15 13 12 43 43 H 0.96997 * 120.00160 * 180.02562 * 20 19 17 44 44 H 1.09004 * 109.36346 * 28.29942 * 25 10 9 45 45 H 1.08995 * 109.36975 * 148.04760 * 25 10 9 46 46 H 1.09008 * 108.94606 * 342.84263 * 26 6 4 47 47 H 1.08993 * 108.94987 * 101.46461 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4425 0.0006 5 8 4.1534 0.3922 0.0006 6 7 4.2208 2.6097 -0.0049 7 6 3.4685 3.8443 -0.0051 8 6 3.1873 4.2817 1.4536 9 6 4.4262 4.7487 2.0947 10 6 5.5087 3.6812 2.2225 11 1 5.0443 2.7127 2.4082 12 7 6.3988 4.0186 3.3361 13 6 7.0886 3.0469 3.9656 14 8 6.9722 1.8930 3.6106 15 6 8.0047 3.3940 5.1108 16 16 8.7805 1.8852 5.7415 17 6 9.7669 2.5654 7.0334 18 1 9.7547 3.6293 7.2190 19 6 10.5603 1.7341 7.8118 20 7 10.5756 0.4376 7.5852 21 14 11.6066 2.4553 9.1809 22 1 11.4120 3.9267 9.2300 23 1 11.2018 1.8595 10.4795 24 1 13.0373 2.1531 8.9222 25 6 6.3048 3.6204 0.9423 26 6 5.6965 2.5748 -0.0047 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 4.0432 4.6194 -0.5121 35 1 2.5237 3.6935 -0.5273 36 1 2.4548 5.0888 1.4535 37 1 2.7882 3.4358 2.0133 38 1 4.8257 5.5788 1.5121 39 1 4.1828 5.1158 3.0918 40 1 6.4918 4.9414 3.6202 41 1 8.7758 4.0817 4.7636 42 1 7.4286 3.8660 5.9067 43 1 11.1298 -0.1434 8.1294 44 1 6.2910 4.5985 0.4613 45 1 7.3343 3.3439 1.1696 46 1 6.0270 1.5831 0.3042 47 1 6.0552 2.7665 -1.0159 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001065876433.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:48 Heat of formation + Delta-G solvation = -89.078112 kcal Electronic energy + Delta-G solvation = -26143.731475 eV Core-core repulsion = 22452.052416 eV Total energy + Delta-G solvation = -3691.679059 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.77027 -39.33457 -37.63708 -34.98507 -34.71682 -33.12876 -32.41819 -32.01354 -29.24469 -28.11901 -26.72050 -25.52491 -24.99643 -22.87457 -21.40513 -20.83992 -20.28238 -18.96796 -17.81450 -17.34629 -16.71413 -16.43674 -16.25631 -15.90046 -15.01989 -14.79969 -14.72099 -14.63087 -14.39318 -14.05899 -13.92375 -13.44708 -13.34280 -13.15610 -12.89542 -12.79788 -12.57624 -12.23979 -12.03558 -11.88905 -11.84465 -11.72715 -11.34447 -11.19872 -11.06703 -11.02717 -11.00310 -10.91618 -10.83883 -10.73292 -9.83772 -9.79148 -9.34977 -9.07536 -9.02155 -8.72388 -8.20825 -6.48345 -6.20414 -3.90883 2.50396 2.79593 3.03862 3.12229 3.22144 3.28692 3.33178 3.70862 4.21272 4.22191 4.39185 4.42900 4.54961 4.62231 4.73964 4.85021 4.92534 5.02519 5.10029 5.14617 5.15078 5.17763 5.21767 5.29515 5.32208 5.38232 5.47777 5.50232 5.57123 5.64896 5.67195 5.78197 5.84594 5.88396 5.90320 5.91385 6.00698 6.09305 6.14098 6.15260 6.40594 6.68872 7.19286 7.60830 7.73578 8.06429 8.36512 8.65211 9.24795 10.87034 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019451 B = 0.002424 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.139423 B =11550.308569 C =12234.820046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.139 4.139 4 C 0.506 3.494 5 O -0.532 6.532 6 N -0.610 5.610 7 C 0.108 3.892 8 C -0.136 4.136 9 C -0.126 4.126 10 C 0.151 3.849 11 H 0.089 0.911 12 N -0.737 5.737 13 C 0.530 3.470 14 O -0.512 6.512 15 C -0.153 4.153 16 S -0.060 6.060 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.140 4.140 26 C 0.115 3.885 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.396 0.604 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.268 0.732 44 H 0.066 0.934 45 H 0.085 0.915 46 H 0.096 0.904 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.723 11.993 -17.638 29.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.179 4.179 4 C 0.294 3.706 5 O -0.407 6.407 6 N -0.343 5.343 7 C -0.016 4.016 8 C -0.175 4.175 9 C -0.164 4.164 10 C 0.046 3.954 11 H 0.107 0.893 12 N -0.391 5.391 13 C 0.316 3.684 14 O -0.385 6.385 15 C -0.304 4.304 16 S 0.167 5.833 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.137 4.137 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.180 4.180 26 C -0.008 4.008 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.230 0.770 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.085 0.915 45 H 0.104 0.896 46 H 0.114 0.886 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.495 9.326 -18.186 28.244 hybrid contribution 0.929 2.498 1.513 3.065 sum -18.566 11.824 -16.673 27.613 Atomic orbital electron populations 1.21785 0.95509 1.02000 1.01616 1.21311 0.95205 0.94766 1.03763 1.21792 0.91897 1.00156 1.04046 1.20888 0.90451 0.83477 0.75782 1.90735 1.70326 1.31079 1.48604 1.47778 1.06678 1.06042 1.73850 1.21639 0.96641 0.86748 0.96616 1.21254 0.97723 1.02085 0.96434 1.20715 0.95471 0.98348 1.01904 1.20300 0.89717 0.99697 0.85714 0.89296 1.46170 1.47006 1.10541 1.35424 1.20335 0.79936 0.85248 0.82891 1.90734 1.63364 1.19392 1.65042 1.23532 1.00899 1.07561 0.98380 1.85454 1.53704 1.03665 1.40507 1.22905 1.30170 0.96157 1.19084 0.90916 1.25001 0.96466 0.94688 0.97514 1.70030 1.38323 1.02989 1.38887 0.86115 0.79578 0.79033 0.80744 1.19646 1.20573 1.20567 1.22157 1.01097 0.99104 0.95593 1.21718 0.78225 1.01888 0.98920 0.92386 0.92669 0.92837 0.91293 0.91027 0.88903 0.89087 0.90167 0.90079 0.90158 0.91332 0.91537 0.91244 0.77017 0.89309 0.89349 0.92231 0.91534 0.89649 0.88568 0.91915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 37.15 0.37 -0.61 16 2 C -0.11 -1.00 5.22 -26.74 -0.14 -1.14 16 3 C -0.14 -1.08 4.20 -27.88 -0.12 -1.20 16 4 C 0.51 5.96 7.62 -10.98 -0.08 5.88 16 5 O -0.53 -8.85 15.26 5.55 0.08 -8.76 16 6 N -0.61 -5.94 2.25 -172.73 -0.39 -6.32 16 7 C 0.11 0.63 5.17 -4.09 -0.02 0.61 16 8 C -0.14 -0.81 5.62 -28.58 -0.16 -0.97 16 9 C -0.13 -0.94 4.69 -29.78 -0.14 -1.08 16 10 C 0.15 1.75 2.06 -69.22 -0.14 1.60 16 11 H 0.09 1.36 6.91 -51.93 -0.36 1.00 16 12 N -0.74 -9.69 4.93 -55.06 -0.27 -9.96 16 13 C 0.53 9.96 7.67 -10.99 -0.08 9.87 16 14 O -0.51 -11.91 15.52 5.55 0.09 -11.82 16 15 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 16 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 17 C -0.53 -15.38 9.50 30.94 0.29 -15.09 16 18 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 19 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.47 13.22 55.49 0.73 -25.74 16 21 Si 0.92 21.59 29.55 -169.99 -5.02 16.56 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 C -0.14 -1.51 5.38 -27.47 -0.15 -1.66 16 26 C 0.11 1.30 6.07 -3.11 -0.02 1.28 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 31 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 32 H 0.09 0.60 7.11 -51.93 -0.37 0.23 16 33 H 0.09 0.49 7.30 -51.93 -0.38 0.11 16 34 H 0.08 0.38 8.07 -51.93 -0.42 -0.03 16 35 H 0.08 0.32 6.25 -51.93 -0.32 -0.01 16 36 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.07 0.51 7.30 -51.93 -0.38 0.13 16 38 H 0.07 0.40 7.36 -51.93 -0.38 0.01 16 39 H 0.07 0.52 8.04 -51.93 -0.42 0.10 16 40 H 0.40 3.97 8.60 -40.82 -0.35 3.62 16 41 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 42 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 43 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.07 0.54 7.32 -51.93 -0.38 0.16 16 45 H 0.08 1.12 7.85 -51.93 -0.41 0.72 16 46 H 0.10 1.46 6.96 -51.92 -0.36 1.10 16 47 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 385.76 15.07 5.81 5.81 Total: -1.00 -37.27 385.76 -9.32 -46.59 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -7.87 Total: 0.89 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -0.27 Total: -3.38 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 0.07 Total: -42.03 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: 0.17 Total: -20.58 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -37.27 -9.32 -46.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001065876433.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.492 kcal (2) G-P(sol) polarization free energy of solvation -37.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds