Wall clock time and date at job start Tue Mar 31 2020 15:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47118 * 2 1 4 4 C 1.50702 * 109.47159 * 179.97438 * 3 2 1 5 5 O 1.21283 * 120.00262 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99928 * 179.72352 * 4 3 2 7 7 C 1.44582 * 118.64445 * 0.28047 * 6 4 3 8 8 C 1.54860 * 109.60235 * 89.24652 * 7 6 4 9 9 C 1.47104 * 110.32234 * 71.26681 * 8 7 6 10 10 C 1.52566 * 114.32603 * 297.19982 * 9 8 7 11 11 H 1.09005 * 109.49110 * 325.04766 * 10 9 8 12 12 N 1.46497 * 109.49084 * 204.97784 * 10 9 8 13 13 C 1.34774 * 120.00232 * 155.00442 * 12 10 9 14 14 O 1.21286 * 120.00037 * 359.97438 * 13 12 10 15 15 C 1.50702 * 120.00198 * 179.97438 * 13 12 10 16 16 S 1.80997 * 109.47054 * 179.97438 * 15 13 12 17 17 C 1.76206 * 99.99883 * 180.02562 * 16 15 13 18 18 H 1.07995 * 119.99732 * 359.97438 * 17 16 15 19 19 C 1.38796 * 119.99833 * 180.02562 * 17 16 15 20 20 N 1.31630 * 120.00287 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99786 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47418 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47426 * 119.99986 * 21 19 17 24 24 H 1.48498 * 109.47370 * 239.99656 * 21 19 17 25 25 C 1.50886 * 109.36035 * 85.01020 * 10 9 8 26 26 C 1.47605 * 118.64625 * 180.02562 * 6 4 3 27 27 H 1.09001 * 109.47062 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46965 * 299.99512 * 1 2 3 29 29 H 1.09003 * 109.47184 * 60.00331 * 1 2 3 30 30 H 1.09004 * 109.47131 * 240.00065 * 2 1 3 31 31 H 1.09000 * 109.47504 * 120.00369 * 2 1 3 32 32 H 1.09004 * 109.47066 * 60.00025 * 3 2 1 33 33 H 1.08994 * 109.47405 * 299.99855 * 3 2 1 34 34 H 1.08998 * 109.45001 * 209.28844 * 7 6 4 35 35 H 1.08996 * 109.44911 * 329.20982 * 7 6 4 36 36 H 1.08996 * 109.33265 * 191.52593 * 8 7 6 37 37 H 1.09002 * 109.32774 * 311.00787 * 8 7 6 38 38 H 1.09001 * 108.51077 * 58.45284 * 9 8 7 39 39 H 1.09001 * 108.51245 * 175.94887 * 9 8 7 40 40 H 0.97000 * 119.99849 * 334.99303 * 12 10 9 41 41 H 1.08995 * 109.46881 * 299.99793 * 15 13 12 42 42 H 1.08998 * 109.46774 * 59.99478 * 15 13 12 43 43 H 0.96997 * 120.00160 * 180.02562 * 20 19 17 44 44 H 1.09004 * 109.36346 * 28.29942 * 25 10 9 45 45 H 1.08995 * 109.36975 * 148.04760 * 25 10 9 46 46 H 1.09008 * 108.94606 * 342.84263 * 26 6 4 47 47 H 1.08993 * 108.94987 * 101.46461 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4425 0.0006 5 8 4.1534 0.3922 0.0006 6 7 4.2208 2.6097 -0.0049 7 6 3.4685 3.8443 -0.0051 8 6 3.1873 4.2817 1.4536 9 6 4.4262 4.7487 2.0947 10 6 5.5087 3.6812 2.2225 11 1 5.0443 2.7127 2.4082 12 7 6.3988 4.0186 3.3361 13 6 7.0886 3.0469 3.9656 14 8 6.9722 1.8930 3.6106 15 6 8.0047 3.3940 5.1108 16 16 8.7805 1.8852 5.7415 17 6 9.7669 2.5654 7.0334 18 1 9.7547 3.6293 7.2190 19 6 10.5603 1.7341 7.8118 20 7 10.5756 0.4376 7.5852 21 14 11.6066 2.4553 9.1809 22 1 11.4120 3.9267 9.2300 23 1 11.2018 1.8595 10.4795 24 1 13.0373 2.1531 8.9222 25 6 6.3048 3.6204 0.9423 26 6 5.6965 2.5748 -0.0047 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 4.0432 4.6194 -0.5121 35 1 2.5237 3.6935 -0.5273 36 1 2.4548 5.0888 1.4535 37 1 2.7882 3.4358 2.0133 38 1 4.8257 5.5788 1.5121 39 1 4.1828 5.1158 3.0918 40 1 6.4918 4.9414 3.6202 41 1 8.7758 4.0817 4.7636 42 1 7.4286 3.8660 5.9067 43 1 11.1298 -0.1434 8.1294 44 1 6.2910 4.5985 0.4613 45 1 7.3343 3.3439 1.1696 46 1 6.0270 1.5831 0.3042 47 1 6.0552 2.7665 -1.0159 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001065876433.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:46 Heat of formation + Delta-G solvation = -115.543319 kcal Electronic energy + Delta-G solvation = -26144.879092 eV Core-core repulsion = 22452.052416 eV Total energy + Delta-G solvation = -3692.826676 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.66213 -40.63334 -38.67614 -36.08397 -35.42050 -34.60762 -33.89338 -33.14670 -30.67119 -28.89994 -27.73181 -27.37923 -25.90295 -23.60432 -22.16709 -21.79205 -21.55101 -19.83098 -19.75301 -18.21401 -17.79896 -17.47620 -17.46430 -16.90485 -16.78429 -16.38935 -16.01452 -15.52486 -15.45155 -15.18212 -14.72984 -14.68415 -14.52262 -14.19715 -13.94575 -13.79648 -13.58219 -13.36959 -13.18199 -12.93098 -12.88239 -12.81017 -12.63599 -12.61787 -12.34962 -12.01132 -11.93085 -11.77195 -11.65287 -11.64094 -11.53316 -11.17934 -10.93048 -10.77871 -10.28656 -10.20075 -9.60753 -8.70087 -8.36527 -6.15540 1.25170 1.40254 1.45722 1.56870 1.59759 1.62464 2.03346 2.23722 2.27103 2.97572 3.30118 3.52215 3.69225 3.82650 3.91284 3.98251 4.00256 4.06364 4.11250 4.18097 4.26528 4.31275 4.43619 4.47474 4.56797 4.60067 4.69179 4.72179 4.74125 4.81622 4.87899 4.92942 5.00633 5.11524 5.14341 5.23073 5.24628 5.26698 5.39086 5.39852 5.44645 5.53653 5.64932 6.18067 6.42618 6.52354 7.04387 7.21466 7.26786 8.73114 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019451 B = 0.002424 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.139423 B =11550.308569 C =12234.820046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 C -0.128 4.128 4 C 0.492 3.508 5 O -0.598 6.598 6 N -0.603 5.603 7 C 0.098 3.902 8 C -0.134 4.134 9 C -0.120 4.120 10 C 0.148 3.852 11 H 0.044 0.956 12 N -0.709 5.709 13 C 0.530 3.470 14 O -0.568 6.568 15 C -0.127 4.127 16 S -0.160 6.160 17 C -0.543 4.543 18 H 0.084 0.916 19 C 0.010 3.990 20 N -0.913 5.913 21 Si 1.002 2.998 22 H -0.254 1.254 23 H -0.274 1.274 24 H -0.274 1.274 25 C -0.131 4.131 26 C 0.117 3.883 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.051 0.949 31 H 0.038 0.962 32 H 0.113 0.887 33 H 0.129 0.871 34 H 0.104 0.896 35 H 0.111 0.889 36 H 0.119 0.881 37 H 0.048 0.952 38 H 0.098 0.902 39 H 0.075 0.925 40 H 0.417 0.583 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.271 0.729 44 H 0.109 0.891 45 H 0.054 0.946 46 H 0.041 0.959 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.605 17.035 -18.155 32.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.153 4.153 3 C -0.167 4.167 4 C 0.282 3.718 5 O -0.479 6.479 6 N -0.335 5.335 7 C -0.024 4.024 8 C -0.173 4.173 9 C -0.158 4.158 10 C 0.043 3.957 11 H 0.062 0.938 12 N -0.363 5.363 13 C 0.316 3.684 14 O -0.446 6.446 15 C -0.278 4.278 16 S 0.067 5.933 17 C -0.691 4.691 18 H 0.103 0.897 19 C -0.195 4.195 20 N -0.550 5.550 21 Si 0.824 3.176 22 H -0.178 1.178 23 H -0.199 1.199 24 H -0.199 1.199 25 C -0.171 4.171 26 C -0.007 4.007 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.131 0.869 33 H 0.146 0.854 34 H 0.122 0.878 35 H 0.129 0.871 36 H 0.137 0.863 37 H 0.067 0.933 38 H 0.116 0.884 39 H 0.093 0.907 40 H 0.255 0.745 41 H 0.129 0.871 42 H 0.128 0.872 43 H 0.080 0.920 44 H 0.128 0.872 45 H 0.073 0.927 46 H 0.060 0.940 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -21.422 14.482 -18.721 31.923 hybrid contribution 1.452 0.979 1.584 2.361 sum -19.970 15.461 -17.137 30.521 Atomic orbital electron populations 1.21735 0.93055 1.02334 1.03027 1.21294 0.97221 0.95386 1.01406 1.21830 0.88519 0.99771 1.06621 1.21768 0.92260 0.83091 0.74650 1.90709 1.71838 1.33579 1.51787 1.47892 1.05932 1.07226 1.72457 1.22068 0.97826 0.85188 0.97323 1.21293 0.97585 1.02634 0.95756 1.20718 0.94575 0.97246 1.03223 1.20504 0.90604 0.99544 0.85042 0.93796 1.45903 1.45273 1.10415 1.34672 1.20148 0.80130 0.85316 0.82794 1.90734 1.65314 1.21891 1.66623 1.23359 1.01468 1.03570 0.99387 1.85713 1.55360 1.10299 1.41887 1.23227 1.30183 0.96687 1.19001 0.89743 1.26194 0.97850 0.94986 1.00429 1.70206 1.39512 1.04829 1.40430 0.84859 0.77241 0.78899 0.76642 1.17799 1.19935 1.19931 1.22088 0.98951 1.00730 0.95281 1.21543 0.79932 0.99301 0.99874 0.92737 0.91701 0.90818 0.92987 0.94323 0.86868 0.85357 0.87785 0.87132 0.86314 0.93273 0.88359 0.90671 0.74519 0.87074 0.87196 0.92014 0.87240 0.92741 0.94014 0.90026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.91 71.98 0.71 -0.95 16 2 C -0.11 -2.11 5.22 30.59 0.16 -1.95 16 3 C -0.13 -1.83 4.20 29.85 0.13 -1.70 16 4 C 0.49 12.03 7.62 87.66 0.67 12.70 16 5 O -0.60 -22.17 15.26 -3.04 -0.05 -22.22 16 6 N -0.60 -11.26 2.25 -818.80 -1.84 -13.10 16 7 C 0.10 0.73 5.17 87.37 0.45 1.18 16 8 C -0.13 -1.01 5.62 29.40 0.17 -0.85 16 9 C -0.12 -1.29 4.69 28.62 0.13 -1.16 16 10 C 0.15 3.28 2.06 44.16 0.09 3.37 16 11 H 0.04 1.41 6.91 -2.38 -0.02 1.40 16 12 N -0.71 -17.75 4.93 -446.50 -2.20 -19.96 16 13 C 0.53 20.35 7.67 87.66 0.67 21.02 16 14 O -0.57 -28.28 15.52 -3.05 -0.05 -28.33 16 15 C -0.13 -5.13 6.16 71.24 0.44 -4.69 16 16 S -0.16 -9.18 20.57 -56.49 -1.16 -10.34 16 17 C -0.54 -31.57 9.50 67.95 0.65 -30.93 16 18 H 0.08 4.53 7.80 -2.91 -0.02 4.51 16 19 C 0.01 0.57 5.49 84.86 0.47 1.04 16 20 N -0.91 -57.50 13.22 21.65 0.29 -57.21 16 21 Si 1.00 44.25 29.55 68.60 2.03 46.28 16 22 H -0.25 -10.40 7.11 99.48 0.71 -9.69 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 24 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 25 C -0.13 -2.72 5.38 30.12 0.16 -2.56 16 26 C 0.12 2.75 6.07 86.38 0.52 3.27 16 27 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.05 1.10 8.10 -2.38 -0.02 1.08 16 31 H 0.04 0.94 8.10 -2.39 -0.02 0.92 16 32 H 0.11 1.18 7.11 -2.38 -0.02 1.17 16 33 H 0.13 0.88 7.30 -2.39 -0.02 0.87 16 34 H 0.10 0.37 8.07 -2.39 -0.02 0.35 16 35 H 0.11 0.24 6.25 -2.39 -0.01 0.23 16 36 H 0.12 0.13 8.14 -2.39 -0.02 0.11 16 37 H 0.05 0.60 7.30 -2.39 -0.02 0.58 16 38 H 0.10 0.53 7.36 -2.39 -0.02 0.51 16 39 H 0.07 0.79 8.04 -2.39 -0.02 0.77 16 40 H 0.42 7.03 8.60 -92.71 -0.80 6.23 16 41 H 0.11 4.00 8.14 -2.40 -0.02 3.98 16 42 H 0.11 3.98 8.14 -2.40 -0.02 3.96 16 43 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 44 H 0.11 1.34 7.32 -2.39 -0.02 1.32 16 45 H 0.05 1.48 7.85 -2.39 -0.02 1.46 16 46 H 0.04 1.44 6.96 -2.38 -0.02 1.43 16 47 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -92.20 385.76 2.60 -89.61 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: 0.16 Total: 17.47 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: 5.42 Total: -2.21 kcal Atomic # 7 Polarization: -86.51 SS G_CDS: -3.76 Total: -90.27 kcal Atomic # 8 Polarization: -50.45 SS G_CDS: -0.09 Total: -50.54 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Atomic # 16 Polarization: -9.18 SS G_CDS: -1.16 Total: -10.34 kcal Total: -92.20 2.60 -89.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001065876433.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.936 kcal (2) G-P(sol) polarization free energy of solvation -92.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds