Wall clock time and date at job start Tue Mar 31 2020 15:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47268 * 2 1 4 4 C 1.50703 * 109.46838 * 119.99574 * 2 1 3 5 5 O 1.21272 * 119.99952 * 0.02562 * 4 2 1 6 6 N 1.34780 * 119.99685 * 179.97438 * 4 2 1 7 7 C 1.47598 * 118.64844 * 359.97438 * 6 4 2 8 8 C 1.53946 * 112.14674 * 222.15361 * 7 6 4 9 9 C 1.50882 * 110.09335 * 40.56079 * 8 7 6 10 10 C 1.52568 * 109.36123 * 268.11716 * 9 8 7 11 11 H 1.09004 * 108.39099 * 323.85114 * 10 9 8 12 12 N 1.46495 * 108.51672 * 206.26625 * 10 9 8 13 13 C 1.34779 * 120.00299 * 150.23324 * 12 10 9 14 14 O 1.21283 * 119.99753 * 359.97438 * 13 12 10 15 15 C 1.50701 * 119.99843 * 180.02562 * 13 12 10 16 16 S 1.81001 * 109.46896 * 179.97438 * 15 13 12 17 17 C 1.76192 * 100.00053 * 179.97438 * 16 15 13 18 18 H 1.08000 * 120.00436 * 0.02562 * 17 16 15 19 19 C 1.38805 * 119.99929 * 179.97438 * 17 16 15 20 20 N 1.31634 * 119.99846 * 179.72260 * 19 17 16 21 21 Si 1.86795 * 120.00110 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47088 * 89.99559 * 21 19 17 23 23 H 1.48505 * 109.47015 * 209.99475 * 21 19 17 24 24 H 1.48498 * 109.47362 * 329.99901 * 21 19 17 25 25 C 1.47096 * 114.32603 * 85.00912 * 10 9 8 26 26 C 1.44583 * 118.64090 * 180.02562 * 6 4 2 27 27 H 1.08998 * 109.47201 * 300.00743 * 1 2 3 28 28 H 1.09009 * 109.46636 * 59.99967 * 1 2 3 29 29 H 1.08991 * 109.47057 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47553 * 239.99470 * 2 1 3 31 31 H 1.09001 * 109.47178 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47239 * 299.99459 * 3 2 1 33 33 H 1.08998 * 109.47358 * 59.99996 * 3 2 1 34 34 H 1.09001 * 108.94512 * 342.84177 * 7 6 4 35 35 H 1.09001 * 108.94749 * 101.46283 * 7 6 4 36 36 H 1.08997 * 109.37038 * 160.75528 * 8 7 6 37 37 H 1.09000 * 109.36317 * 280.50181 * 8 7 6 38 38 H 1.08995 * 109.49058 * 148.15463 * 9 8 7 39 39 H 1.08997 * 109.49015 * 28.08307 * 9 8 7 40 40 H 0.97004 * 119.99811 * 330.23871 * 12 10 9 41 41 H 1.08998 * 109.46989 * 60.00366 * 15 13 12 42 42 H 1.08996 * 109.47123 * 299.99392 * 15 13 12 43 43 H 0.97000 * 120.00210 * 180.02562 * 20 19 17 44 44 H 1.09004 * 109.32503 * 57.46402 * 25 10 9 45 45 H 1.09004 * 109.32793 * 177.11056 * 25 10 9 46 46 H 1.09004 * 109.44808 * 329.21244 * 26 6 4 47 47 H 1.08996 * 109.45118 * 209.29569 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7103 1.2306 5 8 1.2441 -1.1715 2.0286 6 7 3.3574 -0.8339 1.4436 7 6 4.2898 -0.2629 0.4521 8 6 5.4753 -1.2013 0.1626 9 6 4.9980 -2.6305 0.0841 10 6 5.1065 -3.2764 1.4620 11 1 5.9994 -2.8901 1.9536 12 7 5.2626 -4.7225 1.2870 13 6 5.9499 -5.4411 2.1967 14 8 6.4396 -4.8906 3.1601 15 6 6.1109 -6.9286 2.0163 16 16 7.0756 -7.6023 3.3917 17 6 7.1077 -9.3045 2.9381 18 1 6.6147 -9.6321 2.0347 19 6 7.7675 -10.2244 3.7412 20 7 7.7869 -11.4970 3.4052 21 14 8.6209 -9.6578 5.3033 22 1 7.6673 -9.7229 6.4398 23 1 9.7826 -10.5404 5.5807 24 1 9.0912 -8.2598 5.1313 25 6 3.9496 -3.0341 2.3376 26 6 3.8068 -1.5214 2.6334 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 3.7495 -0.0784 -0.4765 35 1 4.6727 0.6847 0.8310 36 1 5.9351 -0.9211 -0.7851 37 1 6.2110 -1.1113 0.9619 38 1 5.6153 -3.1815 -0.6254 39 1 3.9593 -2.6494 -0.2456 40 1 4.8713 -5.1627 0.5163 41 1 6.6291 -7.1268 1.0781 42 1 5.1286 -7.4005 1.9956 43 1 8.2476 -12.1399 3.9666 44 1 3.0446 -3.3927 1.8471 45 1 4.0884 -3.5713 3.2758 46 1 3.0806 -1.3755 3.4331 47 1 4.7717 -1.1194 2.9423 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001065876943.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:57 Heat of formation + Delta-G solvation = -78.340047 kcal Electronic energy + Delta-G solvation = -26244.818511 eV Core-core repulsion = 22553.605090 eV Total energy + Delta-G solvation = -3691.213421 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.06515 -39.59225 -37.70160 -35.47952 -34.77454 -33.02053 -32.43696 -31.93214 -29.20051 -27.67385 -27.07701 -25.65319 -25.39181 -23.72762 -21.56271 -20.95080 -20.44160 -19.03267 -17.91128 -17.63000 -16.81737 -16.44515 -16.26558 -15.66547 -15.16324 -15.01307 -14.96202 -14.77091 -14.30473 -13.99595 -13.91638 -13.57381 -13.42016 -13.15108 -12.83728 -12.78429 -12.68048 -12.60303 -12.21203 -12.10886 -11.86600 -11.75746 -11.61442 -11.46552 -11.26634 -11.20746 -11.08456 -11.00654 -10.89406 -10.57447 -9.91267 -9.85416 -9.51537 -9.13806 -8.99926 -8.83417 -8.50008 -6.91469 -6.28742 -4.00349 2.33756 2.66416 2.76850 2.98117 3.30075 3.34388 3.50451 3.65033 4.01753 4.16467 4.33271 4.39856 4.44923 4.51039 4.60469 4.65839 4.74222 4.79351 4.96754 4.98764 5.10263 5.12565 5.16356 5.20647 5.24459 5.27739 5.39070 5.41390 5.42450 5.45157 5.51863 5.58444 5.70469 5.76199 5.79307 5.83884 5.87346 5.93792 6.01808 6.15382 6.35377 6.58643 7.01211 7.62220 7.90301 7.94348 8.41864 8.49926 9.17408 10.80505 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.029825 B = 0.002256 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.599684 B =12409.997514 C =12541.405247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.116 4.116 3 C -0.158 4.158 4 C 0.512 3.488 5 O -0.535 6.535 6 N -0.605 5.605 7 C 0.102 3.898 8 C -0.133 4.133 9 C -0.123 4.123 10 C 0.149 3.851 11 H 0.084 0.916 12 N -0.737 5.737 13 C 0.531 3.469 14 O -0.520 6.520 15 C -0.125 4.125 16 S -0.142 6.142 17 C -0.521 4.521 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.880 5.880 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C -0.144 4.144 26 C 0.120 3.880 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.096 0.904 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.398 0.602 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.271 0.729 44 H 0.067 0.933 45 H 0.083 0.917 46 H 0.087 0.913 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.974 27.748 -12.168 31.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.137 4.137 3 C -0.215 4.215 4 C 0.300 3.700 5 O -0.411 6.411 6 N -0.338 5.338 7 C -0.020 4.020 8 C -0.171 4.171 9 C -0.161 4.161 10 C 0.045 3.955 11 H 0.102 0.898 12 N -0.391 5.391 13 C 0.317 3.683 14 O -0.395 6.395 15 C -0.275 4.275 16 S 0.085 5.915 17 C -0.669 4.669 18 H 0.106 0.894 19 C -0.114 4.114 20 N -0.517 5.517 21 Si 0.682 3.318 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.159 1.159 25 C -0.184 4.184 26 C -0.004 4.004 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.114 0.886 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.232 0.768 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.102 0.898 46 H 0.105 0.895 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.482 28.228 -10.066 31.433 hybrid contribution -0.273 -1.082 -0.895 1.431 sum -9.754 27.146 -10.961 30.858 Atomic orbital electron populations 1.21607 0.92433 1.02908 1.02065 1.21311 0.98408 0.97314 0.96710 1.22116 1.02227 0.94172 1.03032 1.20802 0.82015 0.79479 0.87754 1.90711 1.54870 1.48550 1.46988 1.47775 1.05823 1.56857 1.23391 1.22295 0.91295 0.96102 0.92307 1.21746 0.97554 0.94599 1.03233 1.21365 1.02333 0.95794 0.96649 1.19916 0.99392 0.80698 0.95514 0.89836 1.46244 1.57229 1.08105 1.27490 1.20287 0.77031 0.88842 0.82121 1.90688 1.47182 1.72029 1.29577 1.23287 1.05270 0.93668 1.05297 1.84769 1.68593 1.07671 1.30512 1.22320 1.40941 0.89879 1.13742 0.89413 1.24724 0.94875 0.94053 0.97727 1.69942 1.41876 1.01279 1.38602 0.86723 0.80217 0.81267 0.83570 1.19210 1.19956 1.15941 1.21579 0.98793 0.96576 1.01424 1.21349 1.00770 0.91137 0.87126 0.91945 0.92087 0.91928 0.88599 0.91006 0.91401 0.92065 0.89287 0.91293 0.89869 0.90774 0.90608 0.91288 0.76842 0.88549 0.88574 0.91950 0.91419 0.89844 0.89468 0.90350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.92 8.48 37.16 0.32 -0.61 16 2 C -0.12 -0.73 2.43 -91.77 -0.22 -0.96 16 3 C -0.16 -0.69 8.70 37.16 0.32 -0.37 16 4 C 0.51 4.96 7.02 -10.98 -0.08 4.88 16 5 O -0.54 -7.47 15.42 5.56 0.09 -7.38 16 6 N -0.61 -4.88 2.24 -172.58 -0.39 -5.27 16 7 C 0.10 0.50 4.43 -2.95 -0.01 0.49 16 8 C -0.13 -0.71 5.71 -27.30 -0.16 -0.86 16 9 C -0.12 -0.90 5.00 -28.02 -0.14 -1.04 16 10 C 0.15 1.60 1.96 -70.99 -0.14 1.46 16 11 H 0.08 1.04 6.64 -51.93 -0.35 0.70 16 12 N -0.74 -9.22 4.88 -56.81 -0.28 -9.50 16 13 C 0.53 9.30 7.69 -10.98 -0.08 9.22 16 14 O -0.52 -10.97 15.37 5.55 0.09 -10.88 16 15 C -0.12 -2.41 6.16 36.01 0.22 -2.19 16 16 S -0.14 -3.61 18.55 -107.50 -1.99 -5.60 16 17 C -0.52 -15.10 10.04 30.94 0.31 -14.79 16 18 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 19 C 0.09 2.79 5.50 -17.43 -0.10 2.69 16 20 N -0.88 -26.70 13.97 55.49 0.78 -25.92 16 21 Si 0.86 21.92 27.74 -169.99 -4.71 17.20 16 22 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.24 -6.00 6.74 56.52 0.38 -5.61 16 25 C -0.14 -1.65 5.19 -28.62 -0.15 -1.80 16 26 C 0.12 1.17 5.37 -4.12 -0.02 1.15 16 27 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 28 H 0.06 0.30 8.14 -51.92 -0.42 -0.12 16 29 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 30 H 0.10 0.46 7.41 -51.93 -0.38 0.07 16 31 H 0.07 0.23 4.60 -51.93 -0.24 0.00 16 32 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.09 0.29 4.87 -51.93 -0.25 0.04 16 35 H 0.07 0.26 7.56 -51.93 -0.39 -0.13 16 36 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.07 0.46 7.30 -51.93 -0.38 0.08 16 38 H 0.08 0.53 8.05 -51.93 -0.42 0.11 16 39 H 0.07 0.50 7.48 -51.93 -0.39 0.11 16 40 H 0.40 3.96 8.61 -40.82 -0.35 3.61 16 41 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 42 H 0.10 1.76 8.14 -51.92 -0.42 1.33 16 43 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 44 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.08 1.17 7.95 -51.93 -0.41 0.76 16 46 H 0.09 0.99 7.30 -51.93 -0.38 0.61 16 47 H 0.08 0.68 8.06 -51.93 -0.42 0.26 16 LS Contribution 378.18 15.07 5.70 5.70 Total: -1.00 -35.88 378.18 -8.40 -44.27 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -7.74 Total: 0.10 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: 0.07 Total: -2.72 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: 0.11 Total: -40.69 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: 0.17 Total: -18.27 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.71 Total: 17.20 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.60 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.88 -8.40 -44.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001065876943.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.069 kcal (2) G-P(sol) polarization free energy of solvation -35.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds