Wall clock time and date at job start Tue Mar 31 2020 15:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47268 * 2 1 4 4 C 1.50703 * 109.46838 * 119.99574 * 2 1 3 5 5 O 1.21272 * 119.99952 * 0.02562 * 4 2 1 6 6 N 1.34780 * 119.99685 * 179.97438 * 4 2 1 7 7 C 1.47598 * 118.64844 * 359.97438 * 6 4 2 8 8 C 1.53946 * 112.14674 * 222.15361 * 7 6 4 9 9 C 1.50882 * 110.09335 * 40.56079 * 8 7 6 10 10 C 1.52568 * 109.36123 * 268.11716 * 9 8 7 11 11 H 1.09004 * 108.39099 * 323.85114 * 10 9 8 12 12 N 1.46495 * 108.51672 * 206.26625 * 10 9 8 13 13 C 1.34779 * 120.00299 * 150.23324 * 12 10 9 14 14 O 1.21283 * 119.99753 * 359.97438 * 13 12 10 15 15 C 1.50701 * 119.99843 * 180.02562 * 13 12 10 16 16 S 1.81001 * 109.46896 * 179.97438 * 15 13 12 17 17 C 1.76192 * 100.00053 * 179.97438 * 16 15 13 18 18 H 1.08000 * 120.00436 * 0.02562 * 17 16 15 19 19 C 1.38805 * 119.99929 * 179.97438 * 17 16 15 20 20 N 1.31634 * 119.99846 * 179.72260 * 19 17 16 21 21 Si 1.86795 * 120.00110 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47088 * 89.99559 * 21 19 17 23 23 H 1.48505 * 109.47015 * 209.99475 * 21 19 17 24 24 H 1.48498 * 109.47362 * 329.99901 * 21 19 17 25 25 C 1.47096 * 114.32603 * 85.00912 * 10 9 8 26 26 C 1.44583 * 118.64090 * 180.02562 * 6 4 2 27 27 H 1.08998 * 109.47201 * 300.00743 * 1 2 3 28 28 H 1.09009 * 109.46636 * 59.99967 * 1 2 3 29 29 H 1.08991 * 109.47057 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47553 * 239.99470 * 2 1 3 31 31 H 1.09001 * 109.47178 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47239 * 299.99459 * 3 2 1 33 33 H 1.08998 * 109.47358 * 59.99996 * 3 2 1 34 34 H 1.09001 * 108.94512 * 342.84177 * 7 6 4 35 35 H 1.09001 * 108.94749 * 101.46283 * 7 6 4 36 36 H 1.08997 * 109.37038 * 160.75528 * 8 7 6 37 37 H 1.09000 * 109.36317 * 280.50181 * 8 7 6 38 38 H 1.08995 * 109.49058 * 148.15463 * 9 8 7 39 39 H 1.08997 * 109.49015 * 28.08307 * 9 8 7 40 40 H 0.97004 * 119.99811 * 330.23871 * 12 10 9 41 41 H 1.08998 * 109.46989 * 60.00366 * 15 13 12 42 42 H 1.08996 * 109.47123 * 299.99392 * 15 13 12 43 43 H 0.97000 * 120.00210 * 180.02562 * 20 19 17 44 44 H 1.09004 * 109.32503 * 57.46402 * 25 10 9 45 45 H 1.09004 * 109.32793 * 177.11056 * 25 10 9 46 46 H 1.09004 * 109.44808 * 329.21244 * 26 6 4 47 47 H 1.08996 * 109.45118 * 209.29569 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7103 1.2306 5 8 1.2441 -1.1715 2.0286 6 7 3.3574 -0.8339 1.4436 7 6 4.2898 -0.2629 0.4521 8 6 5.4753 -1.2013 0.1626 9 6 4.9980 -2.6305 0.0841 10 6 5.1065 -3.2764 1.4620 11 1 5.9994 -2.8901 1.9536 12 7 5.2626 -4.7225 1.2870 13 6 5.9499 -5.4411 2.1967 14 8 6.4396 -4.8906 3.1601 15 6 6.1109 -6.9286 2.0163 16 16 7.0756 -7.6023 3.3917 17 6 7.1077 -9.3045 2.9381 18 1 6.6147 -9.6321 2.0347 19 6 7.7675 -10.2244 3.7412 20 7 7.7869 -11.4970 3.4052 21 14 8.6209 -9.6578 5.3033 22 1 7.6673 -9.7229 6.4398 23 1 9.7826 -10.5404 5.5807 24 1 9.0912 -8.2598 5.1313 25 6 3.9496 -3.0341 2.3376 26 6 3.8068 -1.5214 2.6334 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 3.7495 -0.0784 -0.4765 35 1 4.6727 0.6847 0.8310 36 1 5.9351 -0.9211 -0.7851 37 1 6.2110 -1.1113 0.9619 38 1 5.6153 -3.1815 -0.6254 39 1 3.9593 -2.6494 -0.2456 40 1 4.8713 -5.1627 0.5163 41 1 6.6291 -7.1268 1.0781 42 1 5.1286 -7.4005 1.9956 43 1 8.2476 -12.1399 3.9666 44 1 3.0446 -3.3927 1.8471 45 1 4.0884 -3.5713 3.2758 46 1 3.0806 -1.3755 3.4331 47 1 4.7717 -1.1194 2.9423 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001065876943.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:56 Heat of formation + Delta-G solvation = -102.995124 kcal Electronic energy + Delta-G solvation = -26245.887636 eV Core-core repulsion = 22553.605090 eV Total energy + Delta-G solvation = -3692.282545 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.83170 -40.77174 -38.64697 -36.31766 -35.49331 -34.68850 -33.72184 -32.98819 -30.58044 -28.13651 -27.95276 -27.71395 -26.14650 -24.40987 -22.26999 -21.75212 -21.67311 -19.88616 -19.66364 -18.35218 -18.00213 -17.44980 -17.30742 -17.09103 -16.53352 -16.38119 -15.78478 -15.62576 -15.38745 -15.15032 -14.96473 -14.81010 -14.58104 -14.20608 -13.85496 -13.71467 -13.43293 -13.36125 -13.29900 -13.13387 -13.03332 -12.84990 -12.71637 -12.44856 -12.39711 -12.14174 -11.99151 -11.93070 -11.86772 -11.68866 -11.58503 -11.18794 -10.96450 -10.64579 -10.55828 -10.22197 -9.63544 -9.01350 -8.53190 -6.24029 0.97298 1.30221 1.45162 1.53666 1.55866 1.63411 2.02884 2.20703 2.25082 2.69993 2.84917 3.44803 3.54028 3.78120 3.91490 3.96618 3.99308 4.06341 4.07775 4.17180 4.20776 4.26047 4.36799 4.44338 4.50454 4.56464 4.65893 4.72467 4.78021 4.88864 4.92352 4.94541 4.98201 5.04952 5.09449 5.13244 5.22841 5.30830 5.34245 5.37709 5.48842 5.64964 5.69061 6.09627 6.36951 6.45883 6.91826 7.18540 7.19893 8.59245 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.029825 B = 0.002256 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.599684 B =12409.997514 C =12541.405247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.111 4.111 3 C -0.154 4.154 4 C 0.503 3.497 5 O -0.590 6.590 6 N -0.600 5.600 7 C 0.096 3.904 8 C -0.130 4.130 9 C -0.116 4.116 10 C 0.151 3.849 11 H 0.070 0.930 12 N -0.714 5.714 13 C 0.535 3.465 14 O -0.560 6.560 15 C -0.112 4.112 16 S -0.174 6.174 17 C -0.530 4.530 18 H 0.061 0.939 19 C 0.044 3.956 20 N -0.917 5.917 21 Si 0.915 3.085 22 H -0.264 1.264 23 H -0.258 1.258 24 H -0.236 1.236 25 C -0.135 4.135 26 C 0.126 3.874 27 H 0.043 0.957 28 H 0.086 0.914 29 H 0.042 0.958 30 H 0.122 0.878 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.045 0.955 34 H 0.115 0.885 35 H 0.088 0.912 36 H 0.113 0.887 37 H 0.065 0.935 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.414 0.586 41 H 0.115 0.885 42 H 0.108 0.892 43 H 0.277 0.723 44 H 0.057 0.943 45 H 0.050 0.950 46 H 0.065 0.935 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.416 30.431 -14.422 34.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.132 4.132 3 C -0.211 4.211 4 C 0.293 3.707 5 O -0.470 6.470 6 N -0.332 5.332 7 C -0.025 4.025 8 C -0.168 4.168 9 C -0.154 4.154 10 C 0.047 3.953 11 H 0.088 0.912 12 N -0.368 5.368 13 C 0.321 3.679 14 O -0.438 6.438 15 C -0.263 4.263 16 S 0.052 5.948 17 C -0.677 4.677 18 H 0.080 0.920 19 C -0.161 4.161 20 N -0.554 5.554 21 Si 0.737 3.263 22 H -0.189 1.189 23 H -0.182 1.182 24 H -0.160 1.160 25 C -0.175 4.175 26 C 0.001 3.999 27 H 0.062 0.938 28 H 0.105 0.895 29 H 0.062 0.938 30 H 0.140 0.860 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.064 0.936 34 H 0.133 0.867 35 H 0.106 0.894 36 H 0.131 0.869 37 H 0.084 0.916 38 H 0.105 0.895 39 H 0.093 0.907 40 H 0.250 0.750 41 H 0.133 0.867 42 H 0.126 0.874 43 H 0.087 0.913 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.083 0.917 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.923 30.935 -12.390 34.498 hybrid contribution -0.553 -1.869 -0.303 1.972 sum -9.477 29.066 -12.693 33.102 Atomic orbital electron populations 1.21615 0.93304 1.01768 1.02375 1.21378 0.97701 0.98498 0.95576 1.22125 1.03221 0.92436 1.03342 1.21550 0.82016 0.78876 0.88243 1.90689 1.56322 1.50936 1.49038 1.47862 1.06099 1.56000 1.23212 1.22629 0.90886 0.96488 0.92465 1.21767 0.97448 0.93015 1.04558 1.21346 1.03109 0.97013 0.93909 1.20123 0.98155 0.79273 0.97763 0.91224 1.46095 1.55207 1.08919 1.26536 1.19948 0.77490 0.88070 0.82425 1.90678 1.49348 1.72417 1.31393 1.23284 1.04853 0.95015 1.03171 1.84682 1.70433 1.05518 1.34159 1.22462 1.40388 0.92030 1.12834 0.92030 1.25586 0.95600 0.94178 1.00745 1.70017 1.42955 1.02366 1.40106 0.85853 0.79687 0.80978 0.79763 1.18875 1.18183 1.15982 1.21441 0.98605 0.97555 0.99883 1.21139 1.00774 0.90260 0.87703 0.93820 0.89525 0.93831 0.86000 0.89359 0.89342 0.93559 0.86740 0.89379 0.86885 0.91602 0.89524 0.90737 0.74967 0.86730 0.87377 0.91345 0.92459 0.93159 0.91692 0.89001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.70 8.48 71.98 0.61 -1.09 16 2 C -0.11 -1.12 2.43 -11.54 -0.03 -1.14 16 3 C -0.15 -0.81 8.70 71.98 0.63 -0.18 16 4 C 0.50 9.30 7.02 87.66 0.62 9.91 16 5 O -0.59 -17.11 15.42 -3.00 -0.05 -17.15 16 6 N -0.60 -8.65 2.24 -818.33 -1.83 -10.48 16 7 C 0.10 0.55 4.43 86.49 0.38 0.94 16 8 C -0.13 -0.85 5.71 30.23 0.17 -0.68 16 9 C -0.12 -1.30 5.00 29.76 0.15 -1.16 16 10 C 0.15 3.03 1.96 43.01 0.08 3.11 16 11 H 0.07 1.67 6.64 -2.39 -0.02 1.65 16 12 N -0.71 -16.87 4.88 -452.05 -2.21 -19.07 16 13 C 0.54 18.41 7.69 87.66 0.67 19.08 16 14 O -0.56 -23.73 15.37 -3.04 -0.05 -23.78 16 15 C -0.11 -4.27 6.16 71.24 0.44 -3.84 16 16 S -0.17 -8.91 18.55 -56.49 -1.05 -9.95 16 17 C -0.53 -31.15 10.04 67.96 0.68 -30.47 16 18 H 0.06 3.82 8.03 -2.91 -0.02 3.79 16 19 C 0.04 2.63 5.50 84.86 0.47 3.09 16 20 N -0.92 -56.23 13.97 21.65 0.30 -55.93 16 21 Si 0.92 45.45 27.74 68.60 1.90 47.35 16 22 H -0.26 -12.86 7.11 99.48 0.71 -12.16 16 23 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 24 H -0.24 -11.66 6.74 99.48 0.67 -10.99 16 25 C -0.14 -3.14 5.19 29.37 0.15 -2.98 16 26 C 0.13 2.46 5.37 87.35 0.47 2.93 16 27 H 0.04 0.71 8.10 -2.39 -0.02 0.69 16 28 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 29 H 0.04 0.71 8.10 -2.39 -0.02 0.69 16 30 H 0.12 0.63 7.41 -2.38 -0.02 0.62 16 31 H 0.09 0.17 4.60 -2.39 -0.01 0.16 16 32 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 33 H 0.05 0.40 8.14 -2.39 -0.02 0.39 16 34 H 0.11 0.13 4.87 -2.39 -0.01 0.12 16 35 H 0.09 0.27 7.56 -2.39 -0.02 0.25 16 36 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 37 H 0.07 0.60 7.30 -2.39 -0.02 0.58 16 38 H 0.09 0.86 8.05 -2.39 -0.02 0.84 16 39 H 0.07 0.81 7.48 -2.39 -0.02 0.79 16 40 H 0.41 7.28 8.61 -92.71 -0.80 6.48 16 41 H 0.11 3.96 8.14 -2.40 -0.02 3.94 16 42 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 43 H 0.28 15.70 8.31 -92.71 -0.77 14.93 16 44 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 45 H 0.05 1.49 7.95 -2.39 -0.02 1.48 16 46 H 0.06 1.57 7.30 -2.38 -0.02 1.55 16 47 H 0.09 1.53 8.06 -2.39 -0.02 1.51 16 Total: -1.00 -81.87 378.18 2.65 -79.21 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 0.13 Total: 12.28 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: 5.50 Total: -2.47 kcal Atomic # 7 Polarization: -81.75 SS G_CDS: -3.74 Total: -85.49 kcal Atomic # 8 Polarization: -40.84 SS G_CDS: -0.09 Total: -40.93 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.90 Total: 47.35 kcal Atomic # 16 Polarization: -8.91 SS G_CDS: -1.05 Total: -9.95 kcal Total: -81.87 2.65 -79.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001065876943.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.783 kcal (2) G-P(sol) polarization free energy of solvation -81.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds