Wall clock time and date at job start Tue Mar 31 2020 15:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46700 * 2 1 4 4 H 1.09005 * 109.47311 * 304.99713 * 3 2 1 5 5 C 1.53000 * 109.47082 * 65.00160 * 3 2 1 6 6 C 1.50707 * 109.46659 * 184.99865 * 3 2 1 7 7 O 1.21275 * 120.00033 * 344.67733 * 6 3 2 8 8 N 1.34776 * 119.99514 * 164.67773 * 6 3 2 9 9 C 1.46924 * 120.63550 * 354.72669 * 8 6 3 10 10 C 1.53197 * 108.77401 * 233.60737 * 9 8 6 11 11 C 1.53036 * 109.31260 * 305.36033 * 10 9 8 12 12 C 1.53046 * 109.53574 * 61.36671 * 11 10 9 13 13 H 1.08994 * 109.49952 * 58.58899 * 12 11 10 14 14 N 1.46505 * 109.49410 * 178.68293 * 12 11 10 15 15 C 1.34780 * 120.00173 * 274.99403 * 14 12 11 16 16 O 1.21278 * 119.99579 * 0.02562 * 15 14 12 17 17 C 1.50691 * 119.99984 * 180.02562 * 15 14 12 18 18 S 1.81005 * 109.47106 * 180.02562 * 17 15 14 19 19 C 1.76200 * 99.99808 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00497 * 359.97438 * 19 18 17 21 21 C 1.38804 * 119.99328 * 179.97438 * 19 18 17 22 22 N 1.31621 * 120.00547 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99345 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47302 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47008 * 120.00268 * 23 21 19 26 26 H 1.48499 * 109.46703 * 239.99689 * 23 21 19 27 27 C 1.46933 * 120.62922 * 174.71996 * 8 6 3 28 28 H 1.09011 * 109.47285 * 60.00171 * 1 2 3 29 29 H 1.08999 * 109.47450 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47391 * 299.99931 * 1 2 3 31 31 H 1.08997 * 109.46915 * 240.00672 * 2 1 3 32 32 H 1.08997 * 109.47075 * 119.99715 * 2 1 3 33 33 H 1.08997 * 109.47255 * 53.59379 * 5 3 2 34 34 H 1.09010 * 109.46939 * 173.59212 * 5 3 2 35 35 H 1.09000 * 109.46918 * 293.58623 * 5 3 2 36 36 H 1.08998 * 109.59139 * 113.81862 * 9 8 6 37 37 H 1.09002 * 109.58487 * 353.38907 * 9 8 6 38 38 H 1.09003 * 109.49894 * 185.40917 * 10 9 8 39 39 H 1.09005 * 109.49634 * 65.31408 * 10 9 8 40 40 H 1.08999 * 109.46030 * 181.38052 * 11 10 9 41 41 H 1.08999 * 109.46368 * 301.34536 * 11 10 9 42 42 H 0.97004 * 120.00184 * 94.99988 * 14 12 11 43 43 H 1.09005 * 109.47368 * 299.99895 * 17 15 14 44 44 H 1.08996 * 109.47817 * 60.00028 * 17 15 14 45 45 H 0.97000 * 120.00221 * 179.97438 * 22 21 19 46 46 H 1.09003 * 109.58010 * 6.60698 * 27 8 6 47 47 H 1.08996 * 109.58651 * 246.18030 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8419 5 6 1.6351 2.1265 1.3074 6 6 3.5419 1.4443 -0.1238 7 8 4.1678 0.4245 0.0734 8 7 4.1894 2.5794 -0.4537 9 6 3.4404 3.7927 -0.8080 10 6 3.9306 4.2947 -2.1698 11 6 5.4484 4.4844 -2.1229 12 6 6.1232 3.1420 -1.8315 13 1 5.8509 2.4227 -2.6037 14 7 7.5775 3.3186 -1.8178 15 6 8.2731 3.2707 -2.9713 16 8 7.6949 3.0818 -4.0205 17 6 9.7690 3.4517 -2.9571 18 16 10.4067 3.3364 -4.6472 19 6 12.1253 3.5779 -4.3428 20 1 12.4783 3.7354 -3.3344 21 6 13.0255 3.5657 -5.3993 22 7 12.5955 3.3733 -6.6283 23 14 14.8475 3.8225 -5.0767 24 1 15.0701 4.0164 -3.6213 25 1 15.6048 2.6318 -5.5394 26 1 15.3160 5.0239 -5.8131 27 6 5.6579 2.6270 -0.4658 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.9731 1.5256 2.1516 34 1 2.0936 3.1143 1.3578 35 1 0.5504 2.2272 1.3440 36 1 3.6098 4.5603 -0.0530 37 1 2.3766 3.5618 -0.8651 38 1 3.4520 5.2465 -2.4006 39 1 3.6788 3.5645 -2.9389 40 1 5.7967 4.8650 -3.0830 41 1 5.7014 5.1962 -1.3370 42 1 8.0399 3.4700 -0.9786 43 1 10.0127 4.4302 -2.5432 44 1 10.2234 2.6742 -2.3432 45 1 13.2246 3.3651 -7.3666 46 1 6.0572 1.6269 -0.2970 47 1 6.0081 3.2996 0.3171 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070440168.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:24 Heat of formation + Delta-G solvation = -92.210709 kcal Electronic energy + Delta-G solvation = -25743.901738 eV Core-core repulsion = 22052.086840 eV Total energy + Delta-G solvation = -3691.814898 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.83845 -39.35998 -37.60274 -35.83289 -34.52449 -32.57270 -32.43020 -30.98533 -29.98124 -28.34250 -26.33178 -25.49261 -25.11030 -23.30515 -22.17950 -20.66080 -20.39103 -19.03348 -17.88353 -17.61229 -16.52356 -16.36547 -16.11614 -15.49436 -15.09763 -14.93340 -14.80616 -14.58401 -14.36263 -14.12856 -13.96459 -13.70325 -13.48130 -13.18455 -13.07026 -12.81996 -12.61428 -12.50435 -12.15007 -12.05975 -11.97783 -11.65487 -11.48597 -11.15806 -11.12018 -11.08509 -11.04977 -11.01709 -11.00355 -10.75806 -9.95639 -9.80788 -9.42077 -9.12158 -9.06801 -8.82165 -8.23492 -6.50134 -6.21935 -3.92371 2.32888 2.50088 3.06352 3.09272 3.21603 3.28770 3.33934 3.72024 4.05526 4.20174 4.32414 4.42439 4.49146 4.59156 4.62816 4.68158 4.83630 4.94922 4.97432 5.07230 5.08609 5.13396 5.14529 5.18730 5.27215 5.35209 5.39892 5.44865 5.47060 5.57178 5.61331 5.66042 5.71628 5.75032 5.85071 5.88491 5.96765 6.01201 6.09633 6.10772 6.14398 6.61651 7.04845 7.59844 7.67311 7.87983 8.35363 8.59172 9.23586 10.85546 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.030670 B = 0.002040 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.719056 B =13719.577896 C =13907.095831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.107 4.107 3 C -0.111 4.111 4 H 0.095 0.905 5 C -0.144 4.144 6 C 0.520 3.480 7 O -0.536 6.536 8 N -0.609 5.609 9 C 0.104 3.896 10 C -0.133 4.133 11 C -0.132 4.132 12 C 0.135 3.865 13 H 0.091 0.909 14 N -0.734 5.734 15 C 0.535 3.465 16 O -0.515 6.515 17 C -0.153 4.153 18 S -0.060 6.060 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.106 3.894 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.398 0.602 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.268 0.732 46 H 0.099 0.901 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.695 1.508 17.527 30.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.145 4.145 3 C -0.132 4.132 4 H 0.113 0.887 5 C -0.201 4.201 6 C 0.308 3.692 7 O -0.412 6.412 8 N -0.343 5.343 9 C -0.019 4.019 10 C -0.172 4.172 11 C -0.171 4.171 12 C 0.029 3.971 13 H 0.109 0.891 14 N -0.388 5.388 15 C 0.321 3.679 16 O -0.389 6.389 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.018 4.018 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.107 0.893 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.084 0.916 42 H 0.232 0.768 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.078 0.922 46 H 0.117 0.883 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -25.274 0.609 15.685 29.752 hybrid contribution 2.154 0.644 1.706 2.822 sum -23.120 1.253 17.391 28.957 Atomic orbital electron populations 1.21831 0.95337 1.02023 1.01835 1.21377 0.95485 0.94029 1.03603 1.21385 0.91616 0.99548 1.00647 0.88664 1.21816 1.02185 1.00413 0.95707 1.20762 0.90254 0.82397 0.75797 1.90710 1.68887 1.31711 1.49880 1.48010 1.06316 1.11609 1.68405 1.21907 0.96432 0.86638 0.96914 1.21912 0.96237 1.02183 0.96885 1.21950 0.94479 0.97313 1.03331 1.21150 0.80570 0.97607 0.97761 0.89077 1.45954 1.06757 1.76118 1.09981 1.20313 0.89181 0.75251 0.83145 1.90701 1.70999 1.46591 1.30580 1.23533 0.93524 1.04841 1.08498 1.85402 1.04881 1.94466 0.98632 1.22911 0.92018 1.57054 0.96334 0.90857 1.24999 0.99576 0.94619 0.94438 1.70023 1.35169 1.46308 0.98776 0.86113 0.82896 0.78001 0.78457 1.19614 1.20557 1.20574 1.21764 0.79981 1.03671 0.96343 0.92684 0.92390 0.92444 0.91362 0.90988 0.91881 0.92075 0.91095 0.91006 0.89302 0.90103 0.91013 0.90432 0.91569 0.76797 0.89181 0.89150 0.92233 0.88288 0.91020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.67 37.16 0.36 -0.46 16 2 C -0.11 -0.81 4.73 -26.73 -0.13 -0.94 16 3 C -0.11 -0.77 1.87 -91.77 -0.17 -0.95 16 4 H 0.10 0.51 6.58 -51.93 -0.34 0.17 16 5 C -0.14 -0.74 8.54 37.16 0.32 -0.42 16 6 C 0.52 5.46 6.89 -10.98 -0.08 5.38 16 7 O -0.54 -7.85 15.51 5.56 0.09 -7.77 16 8 N -0.61 -5.51 2.97 -172.76 -0.51 -6.02 16 9 C 0.10 0.63 5.38 -3.71 -0.02 0.61 16 10 C -0.13 -1.00 6.08 -26.61 -0.16 -1.16 16 11 C -0.13 -1.34 5.46 -26.69 -0.15 -1.48 16 12 C 0.14 1.61 2.60 -67.81 -0.18 1.43 16 13 H 0.09 1.37 7.58 -51.93 -0.39 0.98 16 14 N -0.73 -9.67 5.08 -53.69 -0.27 -9.94 16 15 C 0.53 9.90 7.81 -10.99 -0.09 9.81 16 16 O -0.52 -11.62 15.53 5.56 0.09 -11.53 16 17 C -0.15 -3.08 6.16 36.00 0.22 -2.86 16 18 S -0.06 -1.64 20.57 -107.50 -2.21 -3.86 16 19 C -0.53 -15.29 9.50 30.94 0.29 -14.99 16 20 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 21 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -26.26 13.22 55.49 0.73 -25.52 16 23 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 C 0.11 1.06 5.91 -3.71 -0.02 1.04 16 28 H 0.05 0.26 8.14 -51.92 -0.42 -0.16 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.25 6.71 -51.93 -0.35 -0.09 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.28 7.06 -51.92 -0.37 -0.09 16 35 H 0.07 0.26 6.89 -51.93 -0.36 -0.10 16 36 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.09 0.38 5.32 -51.93 -0.28 0.10 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.40 4.02 8.60 -40.82 -0.35 3.67 16 43 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 44 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 45 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 46 H 0.10 1.20 7.00 -51.93 -0.36 0.83 16 47 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 387.49 15.07 5.84 5.84 Total: -1.00 -36.29 387.49 -9.00 -45.29 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -7.84 Total: 0.03 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: 0.11 Total: -2.99 kcal Atomic # 7 Polarization: -41.43 SS G_CDS: -0.05 Total: -41.48 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: 0.17 Total: -19.30 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.29 -9.00 -45.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070440168.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.922 kcal (2) G-P(sol) polarization free energy of solvation -36.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds