Wall clock time and date at job start Tue Mar 31 2020 15:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46700 * 2 1 4 4 H 1.09005 * 109.47311 * 304.99713 * 3 2 1 5 5 C 1.53000 * 109.47082 * 65.00160 * 3 2 1 6 6 C 1.50707 * 109.46659 * 184.99865 * 3 2 1 7 7 O 1.21275 * 120.00033 * 344.67733 * 6 3 2 8 8 N 1.34776 * 119.99514 * 164.67773 * 6 3 2 9 9 C 1.46924 * 120.63550 * 354.72669 * 8 6 3 10 10 C 1.53197 * 108.77401 * 233.60737 * 9 8 6 11 11 C 1.53036 * 109.31260 * 305.36033 * 10 9 8 12 12 C 1.53046 * 109.53574 * 61.36671 * 11 10 9 13 13 H 1.08994 * 109.49952 * 58.58899 * 12 11 10 14 14 N 1.46505 * 109.49410 * 178.68293 * 12 11 10 15 15 C 1.34780 * 120.00173 * 274.99403 * 14 12 11 16 16 O 1.21278 * 119.99579 * 0.02562 * 15 14 12 17 17 C 1.50691 * 119.99984 * 180.02562 * 15 14 12 18 18 S 1.81005 * 109.47106 * 180.02562 * 17 15 14 19 19 C 1.76200 * 99.99808 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00497 * 359.97438 * 19 18 17 21 21 C 1.38804 * 119.99328 * 179.97438 * 19 18 17 22 22 N 1.31621 * 120.00547 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99345 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47302 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47008 * 120.00268 * 23 21 19 26 26 H 1.48499 * 109.46703 * 239.99689 * 23 21 19 27 27 C 1.46933 * 120.62922 * 174.71996 * 8 6 3 28 28 H 1.09011 * 109.47285 * 60.00171 * 1 2 3 29 29 H 1.08999 * 109.47450 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47391 * 299.99931 * 1 2 3 31 31 H 1.08997 * 109.46915 * 240.00672 * 2 1 3 32 32 H 1.08997 * 109.47075 * 119.99715 * 2 1 3 33 33 H 1.08997 * 109.47255 * 53.59379 * 5 3 2 34 34 H 1.09010 * 109.46939 * 173.59212 * 5 3 2 35 35 H 1.09000 * 109.46918 * 293.58623 * 5 3 2 36 36 H 1.08998 * 109.59139 * 113.81862 * 9 8 6 37 37 H 1.09002 * 109.58487 * 353.38907 * 9 8 6 38 38 H 1.09003 * 109.49894 * 185.40917 * 10 9 8 39 39 H 1.09005 * 109.49634 * 65.31408 * 10 9 8 40 40 H 1.08999 * 109.46030 * 181.38052 * 11 10 9 41 41 H 1.08999 * 109.46368 * 301.34536 * 11 10 9 42 42 H 0.97004 * 120.00184 * 94.99988 * 14 12 11 43 43 H 1.09005 * 109.47368 * 299.99895 * 17 15 14 44 44 H 1.08996 * 109.47817 * 60.00028 * 17 15 14 45 45 H 0.97000 * 120.00221 * 179.97438 * 22 21 19 46 46 H 1.09003 * 109.58010 * 6.60698 * 27 8 6 47 47 H 1.08996 * 109.58651 * 246.18030 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8419 5 6 1.6351 2.1265 1.3074 6 6 3.5419 1.4443 -0.1238 7 8 4.1678 0.4245 0.0734 8 7 4.1894 2.5794 -0.4537 9 6 3.4404 3.7927 -0.8080 10 6 3.9306 4.2947 -2.1698 11 6 5.4484 4.4844 -2.1229 12 6 6.1232 3.1420 -1.8315 13 1 5.8509 2.4227 -2.6037 14 7 7.5775 3.3186 -1.8178 15 6 8.2731 3.2707 -2.9713 16 8 7.6949 3.0818 -4.0205 17 6 9.7690 3.4517 -2.9571 18 16 10.4067 3.3364 -4.6472 19 6 12.1253 3.5779 -4.3428 20 1 12.4783 3.7354 -3.3344 21 6 13.0255 3.5657 -5.3993 22 7 12.5955 3.3733 -6.6283 23 14 14.8475 3.8225 -5.0767 24 1 15.0701 4.0164 -3.6213 25 1 15.6048 2.6318 -5.5394 26 1 15.3160 5.0239 -5.8131 27 6 5.6579 2.6270 -0.4658 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.9731 1.5256 2.1516 34 1 2.0936 3.1143 1.3578 35 1 0.5504 2.2272 1.3440 36 1 3.6098 4.5603 -0.0530 37 1 2.3766 3.5618 -0.8651 38 1 3.4520 5.2465 -2.4006 39 1 3.6788 3.5645 -2.9389 40 1 5.7967 4.8650 -3.0830 41 1 5.7014 5.1962 -1.3370 42 1 8.0399 3.4700 -0.9786 43 1 10.0127 4.4302 -2.5432 44 1 10.2234 2.6742 -2.3432 45 1 13.2246 3.3651 -7.3666 46 1 6.0572 1.6269 -0.2970 47 1 6.0081 3.2996 0.3171 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070440168.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:23 Heat of formation + Delta-G solvation = -117.571982 kcal Electronic energy + Delta-G solvation = -25745.001486 eV Core-core repulsion = 22052.086840 eV Total energy + Delta-G solvation = -3692.914645 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.67273 -40.65796 -38.58091 -36.48765 -35.65732 -34.60052 -33.43088 -32.02599 -30.74536 -29.54088 -27.67493 -26.98769 -25.69545 -24.15238 -22.90957 -21.76453 -21.41648 -19.94129 -19.66696 -18.36977 -17.94414 -17.42951 -16.99907 -16.89638 -16.49795 -16.33144 -15.86096 -15.61359 -15.36711 -15.22885 -14.81672 -14.78152 -14.52036 -14.27852 -14.11435 -13.77160 -13.60059 -13.40912 -13.17688 -13.00163 -12.92749 -12.63605 -12.61227 -12.58054 -12.38291 -12.21572 -11.99315 -11.90429 -11.72653 -11.65038 -11.56984 -11.17300 -11.04138 -10.69151 -10.29307 -10.23521 -9.71175 -8.68697 -8.36288 -6.14534 1.23123 1.40496 1.43057 1.52870 1.56922 1.58270 1.81695 2.25524 2.37676 2.97973 3.29880 3.41048 3.62716 3.75716 3.82594 3.90659 3.92786 4.01335 4.02554 4.19974 4.27847 4.31218 4.48420 4.48499 4.52684 4.56339 4.61047 4.68255 4.74423 4.75757 4.85414 4.96051 5.01107 5.04798 5.14029 5.16131 5.21156 5.21933 5.35410 5.38362 5.40831 5.48235 5.53725 6.18670 6.32536 6.45562 7.05094 7.10249 7.20345 8.73231 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.030670 B = 0.002040 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.719056 B =13719.577896 C =13907.095831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.108 4.108 3 C -0.105 4.105 4 H 0.119 0.881 5 C -0.139 4.139 6 C 0.511 3.489 7 O -0.589 6.589 8 N -0.608 5.608 9 C 0.103 3.897 10 C -0.129 4.129 11 C -0.127 4.127 12 C 0.137 3.863 13 H 0.051 0.949 14 N -0.708 5.708 15 C 0.537 3.463 16 O -0.564 6.564 17 C -0.129 4.129 18 S -0.153 6.153 19 C -0.545 4.545 20 H 0.084 0.916 21 C 0.012 3.988 22 N -0.912 5.912 23 Si 1.000 3.000 24 H -0.256 1.256 25 H -0.275 1.275 26 H -0.273 1.273 27 C 0.113 3.887 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.043 0.957 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.114 0.886 38 H 0.107 0.893 39 H 0.052 0.948 40 H 0.044 0.956 41 H 0.091 0.909 42 H 0.418 0.582 43 H 0.114 0.886 44 H 0.108 0.892 45 H 0.271 0.729 46 H 0.073 0.927 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.758 3.634 20.416 33.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.146 4.146 3 C -0.126 4.126 4 H 0.136 0.864 5 C -0.196 4.196 6 C 0.301 3.699 7 O -0.469 6.469 8 N -0.340 5.340 9 C -0.018 4.018 10 C -0.168 4.168 11 C -0.166 4.166 12 C 0.031 3.969 13 H 0.069 0.931 14 N -0.363 5.363 15 C 0.323 3.677 16 O -0.442 6.442 17 C -0.280 4.280 18 S 0.074 5.926 19 C -0.693 4.693 20 H 0.102 0.898 21 C -0.193 4.193 22 N -0.548 5.548 23 Si 0.822 3.178 24 H -0.180 1.180 25 H -0.200 1.200 26 H -0.198 1.198 27 C -0.011 4.011 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.112 0.888 36 H 0.119 0.881 37 H 0.132 0.868 38 H 0.125 0.875 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.110 0.890 42 H 0.255 0.745 43 H 0.132 0.868 44 H 0.126 0.874 45 H 0.080 0.920 46 H 0.092 0.908 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -26.371 2.773 18.632 32.408 hybrid contribution 2.397 -0.036 0.855 2.545 sum -23.974 2.737 19.487 31.016 Atomic orbital electron populations 1.21795 0.93167 1.02385 1.03056 1.21359 0.97285 0.94380 1.01608 1.21447 0.88809 0.99503 1.02801 0.86365 1.21828 1.03700 1.00434 0.93682 1.21515 0.91753 0.81841 0.74804 1.90686 1.70178 1.33674 1.52371 1.48158 1.05928 1.12398 1.67543 1.22195 0.97338 0.85823 0.96478 1.21915 0.94237 1.03134 0.97507 1.21907 0.96286 0.96076 1.02332 1.21220 0.79467 0.98178 0.98013 0.93072 1.45675 1.07490 1.73909 1.09184 1.20073 0.88678 0.75164 0.83816 1.90691 1.71587 1.49215 1.32659 1.23368 0.94453 1.06785 1.03393 1.85597 1.06267 1.94881 1.05812 1.23241 0.92099 1.57011 0.96974 0.89836 1.26151 1.05172 0.93941 0.94006 1.70188 1.37162 1.47461 0.99996 0.84888 0.75787 0.78057 0.79096 1.17978 1.20024 1.19811 1.21633 0.81079 1.02841 0.95568 0.91661 0.92600 0.90879 0.93767 0.92760 0.93210 0.90687 0.88829 0.88106 0.86751 0.87458 0.92959 0.93735 0.89013 0.74489 0.86816 0.87355 0.91985 0.90839 0.87774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.67 71.98 0.70 -0.61 16 2 C -0.11 -1.62 4.73 30.59 0.14 -1.48 16 3 C -0.10 -1.27 1.87 -11.54 -0.02 -1.29 16 4 H 0.12 0.89 6.58 -2.38 -0.02 0.87 16 5 C -0.14 -0.98 8.54 71.98 0.61 -0.37 16 6 C 0.51 10.44 6.89 87.66 0.60 11.04 16 7 O -0.59 -18.04 15.51 -3.01 -0.05 -18.09 16 8 N -0.61 -9.91 2.97 -818.89 -2.43 -12.34 16 9 C 0.10 0.86 5.38 86.36 0.46 1.33 16 10 C -0.13 -1.64 6.08 30.67 0.19 -1.45 16 11 C -0.13 -2.41 5.46 30.62 0.17 -2.24 16 12 C 0.14 3.23 2.60 45.07 0.12 3.35 16 13 H 0.05 1.64 7.58 -2.39 -0.02 1.63 16 14 N -0.71 -18.15 5.08 -442.17 -2.25 -20.39 16 15 C 0.54 20.13 7.81 87.65 0.68 20.82 16 16 O -0.56 -26.70 15.53 -3.02 -0.05 -26.75 16 17 C -0.13 -5.14 6.16 71.23 0.44 -4.70 16 18 S -0.15 -8.59 20.57 -56.49 -1.16 -9.75 16 19 C -0.55 -31.40 9.50 67.96 0.65 -30.76 16 20 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 21 C 0.01 0.69 5.49 84.86 0.47 1.15 16 22 N -0.91 -56.50 13.22 21.65 0.29 -56.22 16 23 Si 1.00 43.94 29.55 68.60 2.03 45.97 16 24 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 25 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 26 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 27 C 0.11 2.12 5.91 86.36 0.51 2.63 16 28 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 29 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.07 0.43 6.71 -2.39 -0.02 0.42 16 31 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.05 0.98 8.09 -2.39 -0.02 0.96 16 33 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.07 0.35 7.06 -2.38 -0.02 0.33 16 35 H 0.09 0.28 6.89 -2.39 -0.02 0.26 16 36 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 37 H 0.11 0.43 5.32 -2.39 -0.01 0.42 16 38 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 40 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.42 7.49 8.60 -92.71 -0.80 6.70 16 43 H 0.11 4.00 8.14 -2.39 -0.02 3.99 16 44 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 45 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 46 H 0.07 1.80 7.00 -2.39 -0.02 1.79 16 47 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -85.59 387.49 2.26 -83.33 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 0.16 Total: 16.82 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: 5.72 Total: -2.58 kcal Atomic # 7 Polarization: -84.56 SS G_CDS: -4.39 Total: -88.95 kcal Atomic # 8 Polarization: -44.74 SS G_CDS: -0.09 Total: -44.83 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.75 kcal Total: -85.59 2.26 -83.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070440168.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.240 kcal (2) G-P(sol) polarization free energy of solvation -85.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds