Wall clock time and date at job start Tue Mar 31 2020 15:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47141 * 2 1 4 4 H 1.09004 * 109.47066 * 54.99931 * 3 2 1 5 5 C 1.53000 * 109.47166 * 294.99927 * 3 2 1 6 6 C 1.50702 * 109.47159 * 174.99728 * 3 2 1 7 7 O 1.21283 * 120.00262 * 0.02562 * 6 3 2 8 8 N 1.34777 * 119.99928 * 179.72352 * 6 3 2 9 9 C 1.46499 * 120.00199 * 180.27479 * 8 6 3 10 10 H 1.09007 * 109.49691 * 325.00710 * 9 8 6 11 11 C 1.53035 * 109.50210 * 204.93909 * 9 8 6 12 12 C 1.53037 * 109.54060 * 178.71500 * 11 9 8 13 13 C 1.53197 * 109.33898 * 61.31844 * 12 11 9 14 14 N 1.46924 * 108.77385 * 305.38205 * 13 12 11 15 15 C 1.34777 * 120.62978 * 233.63178 * 14 13 12 16 16 O 1.21277 * 120.00311 * 179.97438 * 15 14 13 17 17 C 1.50702 * 119.99793 * 359.97372 * 15 14 13 18 18 S 1.81004 * 109.47128 * 179.97438 * 17 15 14 19 19 C 1.76197 * 99.99981 * 179.97438 * 18 17 15 20 20 H 1.08000 * 120.00372 * 0.02562 * 19 18 17 21 21 C 1.38800 * 120.00113 * 180.02562 * 19 18 17 22 22 N 1.31638 * 119.99727 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00233 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46974 * 59.99765 * 23 21 19 25 25 H 1.48502 * 109.47132 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47205 * 299.99883 * 23 21 19 27 27 C 1.46929 * 118.74001 * 53.60395 * 14 13 12 28 28 H 1.09001 * 109.47091 * 60.00619 * 1 2 3 29 29 H 1.09001 * 109.47039 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47103 * 299.99907 * 1 2 3 31 31 H 1.09005 * 109.47761 * 239.99871 * 2 1 3 32 32 H 1.09000 * 109.47436 * 120.00075 * 2 1 3 33 33 H 1.08994 * 109.47175 * 59.99981 * 5 3 2 34 34 H 1.09001 * 109.46739 * 179.97438 * 5 3 2 35 35 H 1.08996 * 109.46783 * 299.99412 * 5 3 2 36 36 H 0.97000 * 120.00317 * 0.28382 * 8 6 3 37 37 H 1.09003 * 109.46153 * 298.70406 * 11 9 8 38 38 H 1.08998 * 109.46093 * 58.65887 * 11 9 8 39 39 H 1.08996 * 109.47311 * 301.36639 * 12 11 9 40 40 H 1.09003 * 109.49898 * 181.28029 * 12 11 9 41 41 H 1.09003 * 109.58989 * 185.59158 * 13 12 11 42 42 H 1.09006 * 109.70440 * 65.23475 * 13 12 11 43 43 H 1.08998 * 109.47681 * 300.00337 * 17 15 14 44 44 H 1.08997 * 109.47090 * 60.00253 * 17 15 14 45 45 H 0.96994 * 119.99739 * 180.02562 * 22 21 19 46 46 H 1.09001 * 109.58387 * 186.60619 * 27 14 13 47 47 H 1.09003 * 109.70163 * 66.25682 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5419 1.4443 0.1239 7 8 4.1451 0.3951 0.2038 8 7 4.2153 2.6116 0.1398 9 6 5.6758 2.6132 0.2541 10 1 5.9914 1.7908 0.8962 11 6 6.1394 3.9404 0.8589 12 6 7.6625 3.9304 1.0085 13 6 8.3069 3.7765 -0.3728 14 7 7.7563 2.5782 -1.0206 15 6 8.5737 1.6197 -1.4996 16 8 8.1070 0.6350 -2.0319 17 6 10.0678 1.7716 -1.3740 18 16 10.8844 0.3314 -2.1055 19 6 12.5703 0.7619 -1.8284 20 1 12.8164 1.6897 -1.3333 21 6 13.5822 -0.0912 -2.2464 22 7 13.2823 -1.2223 -2.8494 23 14 15.3696 0.3649 -1.9520 24 1 15.6079 0.5170 -0.4942 25 1 16.2483 -0.7057 -2.4877 26 1 15.6733 1.6456 -2.6395 27 6 6.2977 2.4444 -1.1356 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 0.5490 2.1252 -1.3969 34 1 1.9982 3.1543 -1.3071 35 1 2.0699 1.5875 -2.1491 36 1 3.7330 3.4508 0.0756 37 1 5.8447 4.7605 0.2042 38 1 5.6788 4.0740 1.8377 39 1 7.9598 3.0960 1.6436 40 1 7.9898 4.8668 1.4603 41 1 9.3860 3.6693 -0.2627 42 1 8.0870 4.6542 -0.9808 43 1 10.3865 2.6742 -1.8953 44 1 10.3381 1.8459 -0.3206 45 1 13.9894 -1.8186 -3.1412 46 1 6.0512 1.4581 -1.5289 47 1 5.9099 3.2121 -1.8053 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070452613.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:14 Heat of formation + Delta-G solvation = -92.714797 kcal Electronic energy + Delta-G solvation = -25945.696051 eV Core-core repulsion = 22253.859294 eV Total energy + Delta-G solvation = -3691.836757 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.56835 -39.53131 -37.36626 -35.68473 -34.74207 -32.42049 -32.35708 -30.99879 -29.83699 -28.50602 -25.67302 -25.57038 -25.07051 -23.51488 -21.85854 -21.12265 -19.96986 -19.03310 -17.70990 -17.36737 -16.76516 -16.27602 -15.91465 -15.55025 -15.21968 -14.89979 -14.78334 -14.49473 -14.19919 -13.95957 -13.83946 -13.72424 -13.27222 -13.09706 -13.05124 -12.76373 -12.53689 -12.47668 -12.03954 -11.92396 -11.89709 -11.74389 -11.29638 -11.24560 -11.13083 -11.02233 -11.01674 -10.98156 -10.81665 -10.73550 -9.88990 -9.79556 -9.49325 -9.27843 -9.03644 -8.45768 -8.19190 -6.47207 -6.18773 -3.89455 2.45684 2.72238 3.07775 3.11960 3.24886 3.28412 3.31334 3.63670 4.22360 4.32264 4.39650 4.47377 4.56389 4.60616 4.68762 4.83615 4.95961 5.00441 5.03898 5.11973 5.15751 5.15904 5.21149 5.24963 5.32487 5.44422 5.52615 5.53801 5.56484 5.64280 5.67231 5.69887 5.75469 5.80372 5.89657 5.93377 5.97914 6.01814 6.07516 6.13026 6.20912 6.66127 7.25945 7.57510 7.61531 8.05810 8.37261 8.60442 9.25933 10.88589 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020901 B = 0.002410 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.314269 B =11617.820420 C =12552.344886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.108 4.108 3 C -0.109 4.109 4 H 0.095 0.905 5 C -0.146 4.146 6 C 0.512 3.488 7 O -0.526 6.526 8 N -0.727 5.727 9 C 0.130 3.870 10 H 0.093 0.907 11 C -0.124 4.124 12 C -0.132 4.132 13 C 0.105 3.895 14 N -0.619 5.619 15 C 0.534 3.466 16 O -0.511 6.511 17 C -0.149 4.149 18 S -0.060 6.060 19 C -0.535 4.535 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.106 3.894 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.399 0.601 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.093 0.907 42 H 0.068 0.932 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.269 0.731 46 H 0.097 0.903 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.884 15.067 8.500 29.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.146 4.146 3 C -0.131 4.131 4 H 0.113 0.887 5 C -0.204 4.204 6 C 0.298 3.702 7 O -0.400 6.400 8 N -0.379 5.379 9 C 0.025 3.975 10 H 0.111 0.889 11 C -0.162 4.162 12 C -0.171 4.171 13 C -0.018 4.018 14 N -0.356 5.356 15 C 0.322 3.678 16 O -0.384 6.384 17 C -0.300 4.300 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.200 1.200 27 C -0.018 4.018 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.233 0.767 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.111 0.889 42 H 0.086 0.914 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.079 0.921 46 H 0.115 0.885 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -24.055 12.629 7.666 28.229 hybrid contribution 1.484 2.009 0.836 2.634 sum -22.570 14.638 8.502 28.213 Atomic orbital electron populations 1.21839 0.95482 1.01993 1.01704 1.21363 0.95302 0.94107 1.03826 1.21353 0.91652 0.99604 1.00458 0.88661 1.21838 1.02381 1.00083 0.96059 1.20795 0.90048 0.83643 0.75667 1.90787 1.70171 1.31210 1.47854 1.46004 1.07091 1.08824 1.75978 1.21329 0.79318 0.99313 0.97558 0.88888 1.21785 0.96701 0.96387 1.01349 1.21896 0.94364 1.03205 0.97644 1.21757 0.99639 0.87616 0.92797 1.48032 1.05560 1.21305 1.60674 1.20368 0.88521 0.81729 0.77196 1.90713 1.76885 1.29027 1.41799 1.23547 0.93676 1.07391 1.05357 1.85463 1.01241 1.20716 1.75950 1.22816 0.91212 1.09135 1.45208 0.91002 1.24998 0.99530 0.94508 0.94582 1.70015 1.33558 1.09833 1.36836 0.86225 0.82395 0.78196 0.78680 1.19948 1.20823 1.19953 1.21811 0.80076 1.04012 0.95929 0.92455 0.92399 0.92818 0.91072 0.91062 0.91143 0.92278 0.91793 0.76704 0.91197 0.91051 0.90867 0.90034 0.88913 0.91401 0.89264 0.89242 0.92134 0.88460 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.67 37.16 0.36 -0.57 16 2 C -0.11 -0.92 4.75 -26.73 -0.13 -1.05 16 3 C -0.11 -0.81 2.73 -91.77 -0.25 -1.06 16 4 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 5 C -0.15 -0.83 8.84 37.16 0.33 -0.50 16 6 C 0.51 5.63 7.12 -10.98 -0.08 5.55 16 7 O -0.53 -8.58 15.58 5.55 0.09 -8.50 16 8 N -0.73 -6.18 4.97 -53.69 -0.27 -6.45 16 9 C 0.13 1.39 2.60 -67.82 -0.18 1.21 16 10 H 0.09 1.30 7.58 -51.93 -0.39 0.91 16 11 C -0.12 -0.91 5.36 -26.69 -0.14 -1.05 16 12 C -0.13 -1.09 6.08 -26.61 -0.16 -1.25 16 13 C 0.11 1.11 6.34 -3.71 -0.02 1.09 16 14 N -0.62 -9.16 2.97 -172.76 -0.51 -9.68 16 15 C 0.53 10.72 7.72 -10.98 -0.08 10.63 16 16 O -0.51 -12.51 15.27 5.56 0.08 -12.43 16 17 C -0.15 -3.11 4.50 36.01 0.16 -2.95 16 18 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 19 C -0.54 -15.43 9.50 30.94 0.29 -15.13 16 20 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 21 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 22 N -0.87 -26.55 13.22 55.49 0.73 -25.81 16 23 Si 0.92 21.59 29.55 -169.99 -5.02 16.57 16 24 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 27 C 0.11 1.42 6.01 -3.71 -0.02 1.40 16 28 H 0.06 0.30 6.57 -51.93 -0.34 -0.04 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.71 7.96 -51.93 -0.41 0.29 16 33 H 0.07 0.31 6.56 -51.93 -0.34 -0.03 16 34 H 0.06 0.25 7.56 -51.93 -0.39 -0.14 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.40 2.02 8.01 -40.82 -0.33 1.69 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.09 1.01 5.93 -51.93 -0.31 0.70 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.09 1.70 7.94 -51.92 -0.41 1.29 16 44 H 0.09 1.72 7.69 -51.92 -0.40 1.32 16 45 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 46 H 0.10 1.70 7.00 -51.93 -0.36 1.33 16 47 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 388.66 15.07 5.86 5.86 Total: -1.00 -37.52 388.66 -9.16 -46.68 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -7.89 Total: -0.67 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -0.02 Total: -1.67 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: -0.05 Total: -41.94 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: 0.17 Total: -20.92 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.52 -9.16 -46.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070452613.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.037 kcal (2) G-P(sol) polarization free energy of solvation -37.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds