Wall clock time and date at job start Tue Mar 31 2020 15:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47141 * 2 1 4 4 H 1.09004 * 109.47066 * 54.99931 * 3 2 1 5 5 C 1.53000 * 109.47166 * 294.99927 * 3 2 1 6 6 C 1.50702 * 109.47159 * 174.99728 * 3 2 1 7 7 O 1.21283 * 120.00262 * 0.02562 * 6 3 2 8 8 N 1.34777 * 119.99928 * 179.72352 * 6 3 2 9 9 C 1.46499 * 120.00199 * 180.27479 * 8 6 3 10 10 H 1.09007 * 109.49691 * 325.00710 * 9 8 6 11 11 C 1.53035 * 109.50210 * 204.93909 * 9 8 6 12 12 C 1.53037 * 109.54060 * 178.71500 * 11 9 8 13 13 C 1.53197 * 109.33898 * 61.31844 * 12 11 9 14 14 N 1.46924 * 108.77385 * 305.38205 * 13 12 11 15 15 C 1.34777 * 120.62978 * 233.63178 * 14 13 12 16 16 O 1.21277 * 120.00311 * 179.97438 * 15 14 13 17 17 C 1.50702 * 119.99793 * 359.97372 * 15 14 13 18 18 S 1.81004 * 109.47128 * 179.97438 * 17 15 14 19 19 C 1.76197 * 99.99981 * 179.97438 * 18 17 15 20 20 H 1.08000 * 120.00372 * 0.02562 * 19 18 17 21 21 C 1.38800 * 120.00113 * 180.02562 * 19 18 17 22 22 N 1.31638 * 119.99727 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00233 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46974 * 59.99765 * 23 21 19 25 25 H 1.48502 * 109.47132 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47205 * 299.99883 * 23 21 19 27 27 C 1.46929 * 118.74001 * 53.60395 * 14 13 12 28 28 H 1.09001 * 109.47091 * 60.00619 * 1 2 3 29 29 H 1.09001 * 109.47039 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47103 * 299.99907 * 1 2 3 31 31 H 1.09005 * 109.47761 * 239.99871 * 2 1 3 32 32 H 1.09000 * 109.47436 * 120.00075 * 2 1 3 33 33 H 1.08994 * 109.47175 * 59.99981 * 5 3 2 34 34 H 1.09001 * 109.46739 * 179.97438 * 5 3 2 35 35 H 1.08996 * 109.46783 * 299.99412 * 5 3 2 36 36 H 0.97000 * 120.00317 * 0.28382 * 8 6 3 37 37 H 1.09003 * 109.46153 * 298.70406 * 11 9 8 38 38 H 1.08998 * 109.46093 * 58.65887 * 11 9 8 39 39 H 1.08996 * 109.47311 * 301.36639 * 12 11 9 40 40 H 1.09003 * 109.49898 * 181.28029 * 12 11 9 41 41 H 1.09003 * 109.58989 * 185.59158 * 13 12 11 42 42 H 1.09006 * 109.70440 * 65.23475 * 13 12 11 43 43 H 1.08998 * 109.47681 * 300.00337 * 17 15 14 44 44 H 1.08997 * 109.47090 * 60.00253 * 17 15 14 45 45 H 0.96994 * 119.99739 * 180.02562 * 22 21 19 46 46 H 1.09001 * 109.58387 * 186.60619 * 27 14 13 47 47 H 1.09003 * 109.70163 * 66.25682 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5419 1.4443 0.1239 7 8 4.1451 0.3951 0.2038 8 7 4.2153 2.6116 0.1398 9 6 5.6758 2.6132 0.2541 10 1 5.9914 1.7908 0.8962 11 6 6.1394 3.9404 0.8589 12 6 7.6625 3.9304 1.0085 13 6 8.3069 3.7765 -0.3728 14 7 7.7563 2.5782 -1.0206 15 6 8.5737 1.6197 -1.4996 16 8 8.1070 0.6350 -2.0319 17 6 10.0678 1.7716 -1.3740 18 16 10.8844 0.3314 -2.1055 19 6 12.5703 0.7619 -1.8284 20 1 12.8164 1.6897 -1.3333 21 6 13.5822 -0.0912 -2.2464 22 7 13.2823 -1.2223 -2.8494 23 14 15.3696 0.3649 -1.9520 24 1 15.6079 0.5170 -0.4942 25 1 16.2483 -0.7057 -2.4877 26 1 15.6733 1.6456 -2.6395 27 6 6.2977 2.4444 -1.1356 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 0.5490 2.1252 -1.3969 34 1 1.9982 3.1543 -1.3071 35 1 2.0699 1.5875 -2.1491 36 1 3.7330 3.4508 0.0756 37 1 5.8447 4.7605 0.2042 38 1 5.6788 4.0740 1.8377 39 1 7.9598 3.0960 1.6436 40 1 7.9898 4.8668 1.4603 41 1 9.3860 3.6693 -0.2627 42 1 8.0870 4.6542 -0.9808 43 1 10.3865 2.6742 -1.8953 44 1 10.3381 1.8459 -0.3206 45 1 13.9894 -1.8186 -3.1412 46 1 6.0512 1.4581 -1.5289 47 1 5.9099 3.2121 -1.8053 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070452613.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:13 Heat of formation + Delta-G solvation = -119.811438 kcal Electronic energy + Delta-G solvation = -25946.871050 eV Core-core repulsion = 22253.859294 eV Total energy + Delta-G solvation = -3693.011756 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.59032 -40.73456 -38.56581 -36.41470 -35.80786 -34.59857 -33.36720 -32.04925 -30.79589 -29.59816 -27.70986 -26.31094 -26.18351 -24.37047 -22.64695 -22.10479 -20.83791 -20.34409 -19.50749 -18.32058 -18.10014 -17.26789 -17.11630 -16.89013 -16.57997 -16.40001 -15.87734 -15.64948 -15.37451 -15.07564 -14.91641 -14.50969 -14.44293 -14.35081 -14.22586 -13.80707 -13.54434 -13.49975 -13.18863 -12.99623 -12.86829 -12.67988 -12.63946 -12.57564 -12.52487 -12.10776 -12.01187 -11.75739 -11.74634 -11.63635 -11.61177 -11.13795 -11.01589 -10.74141 -10.40803 -10.28205 -9.63676 -8.70907 -8.35270 -6.15209 1.21315 1.42142 1.43797 1.49639 1.54410 1.62214 1.91123 2.25894 2.30953 2.98549 3.22547 3.55723 3.66242 3.73675 3.83845 3.86613 3.94695 3.98220 4.05688 4.17026 4.22293 4.38777 4.39996 4.51664 4.52280 4.55015 4.59028 4.71958 4.74853 4.77589 4.90343 4.96977 5.01965 5.03865 5.12112 5.12481 5.19083 5.26746 5.36740 5.38535 5.39895 5.48620 5.57452 6.18305 6.23146 6.54288 7.04970 7.09178 7.27490 8.74005 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020901 B = 0.002410 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.314269 B =11617.820420 C =12552.344886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 C -0.100 4.100 4 H 0.129 0.871 5 C -0.143 4.143 6 C 0.505 3.495 7 O -0.591 6.591 8 N -0.706 5.706 9 C 0.137 3.863 10 H 0.050 0.950 11 C -0.113 4.113 12 C -0.128 4.128 13 C 0.093 3.907 14 N -0.605 5.605 15 C 0.527 3.473 16 O -0.571 6.571 17 C -0.118 4.118 18 S -0.161 6.161 19 C -0.544 4.544 20 H 0.086 0.914 21 C 0.010 3.990 22 N -0.913 5.913 23 Si 1.002 2.998 24 H -0.261 1.261 25 H -0.280 1.280 26 H -0.259 1.259 27 C 0.106 3.894 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.043 0.957 32 H 0.048 0.952 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.040 0.960 36 H 0.422 0.578 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.051 0.949 40 H 0.119 0.881 41 H 0.090 0.910 42 H 0.102 0.898 43 H 0.113 0.887 44 H 0.108 0.892 45 H 0.271 0.729 46 H 0.045 0.955 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.682 20.086 10.082 33.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.149 4.149 3 C -0.121 4.121 4 H 0.147 0.853 5 C -0.200 4.200 6 C 0.293 3.707 7 O -0.471 6.471 8 N -0.359 5.359 9 C 0.031 3.969 10 H 0.069 0.931 11 C -0.151 4.151 12 C -0.167 4.167 13 C -0.028 4.028 14 N -0.340 5.340 15 C 0.315 3.685 16 O -0.450 6.450 17 C -0.269 4.269 18 S 0.066 5.934 19 C -0.692 4.692 20 H 0.104 0.896 21 C -0.194 4.194 22 N -0.550 5.550 23 Si 0.823 3.177 24 H -0.185 1.185 25 H -0.205 1.205 26 H -0.183 1.183 27 C -0.018 4.018 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.110 0.890 34 H 0.101 0.899 35 H 0.059 0.941 36 H 0.260 0.740 37 H 0.121 0.879 38 H 0.110 0.890 39 H 0.070 0.930 40 H 0.137 0.863 41 H 0.108 0.892 42 H 0.120 0.880 43 H 0.131 0.869 44 H 0.126 0.874 45 H 0.080 0.920 46 H 0.064 0.936 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -24.903 17.766 9.282 31.968 hybrid contribution 1.610 0.508 0.374 1.729 sum -23.293 18.275 9.656 31.141 Atomic orbital electron populations 1.21796 0.93030 1.02323 1.03133 1.21354 0.97351 0.94805 1.01415 1.21394 0.88656 0.99243 1.02839 0.85334 1.21861 1.03659 1.00678 0.93820 1.21603 0.91711 0.83193 0.74212 1.90771 1.71714 1.33705 1.50873 1.45817 1.06263 1.09299 1.74569 1.21138 0.80345 1.00417 0.95032 0.93118 1.21784 0.95977 0.94490 1.02828 1.21915 0.94840 1.04268 0.95662 1.22219 0.99683 0.86384 0.94516 1.48056 1.05804 1.21189 1.58914 1.20314 0.88672 0.82126 0.77374 1.90694 1.77600 1.31732 1.44959 1.23337 0.93641 1.04165 1.05765 1.85734 1.03524 1.26485 1.77676 1.23155 0.90933 1.09735 1.45334 0.89592 1.26211 1.05163 0.94162 0.93891 1.70202 1.35309 1.11309 1.38154 0.84952 0.75195 0.78302 0.79213 1.18539 1.20500 1.18337 1.21904 0.79376 1.02184 0.98311 0.91073 0.92775 0.91163 0.93847 0.93357 0.89041 0.89928 0.94084 0.73956 0.87919 0.88971 0.92968 0.86267 0.89205 0.87980 0.86866 0.87373 0.92009 0.93630 0.88829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.67 71.98 0.70 -0.90 16 2 C -0.11 -1.99 4.75 30.59 0.15 -1.84 16 3 C -0.10 -1.36 2.73 -11.54 -0.03 -1.39 16 4 H 0.13 0.94 8.14 -2.38 -0.02 0.92 16 5 C -0.14 -1.31 8.84 71.98 0.64 -0.67 16 6 C 0.50 11.30 7.12 87.66 0.62 11.93 16 7 O -0.59 -21.20 15.58 -3.04 -0.05 -21.25 16 8 N -0.71 -10.90 4.97 -442.17 -2.20 -13.09 16 9 C 0.14 2.80 2.60 45.07 0.12 2.91 16 10 H 0.05 1.50 7.58 -2.38 -0.02 1.48 16 11 C -0.11 -1.17 5.36 30.62 0.16 -1.01 16 12 C -0.13 -1.63 6.08 30.67 0.19 -1.44 16 13 C 0.09 1.66 6.34 86.36 0.55 2.21 16 14 N -0.61 -17.65 2.97 -818.88 -2.43 -20.09 16 15 C 0.53 21.97 7.72 87.66 0.68 22.65 16 16 O -0.57 -30.21 15.27 -3.02 -0.05 -30.25 16 17 C -0.12 -4.98 4.50 71.24 0.32 -4.66 16 18 S -0.16 -9.43 20.57 -56.49 -1.16 -10.59 16 19 C -0.54 -31.73 9.50 67.95 0.65 -31.09 16 20 H 0.09 4.58 7.80 -2.91 -0.02 4.56 16 21 C 0.01 0.59 5.49 84.86 0.47 1.06 16 22 N -0.91 -57.69 13.22 21.65 0.29 -57.40 16 23 Si 1.00 44.18 29.55 68.60 2.03 46.21 16 24 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 25 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 26 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 27 C 0.11 2.85 6.01 86.36 0.52 3.37 16 28 H 0.07 0.59 6.57 -2.39 -0.02 0.58 16 29 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.05 1.06 7.96 -2.39 -0.02 1.04 16 33 H 0.09 0.50 6.56 -2.39 -0.02 0.48 16 34 H 0.08 0.38 7.56 -2.39 -0.02 0.36 16 35 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.42 2.60 8.01 -92.71 -0.74 1.86 16 37 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.09 1.69 5.93 -2.39 -0.01 1.67 16 42 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 43 H 0.11 4.20 7.94 -2.40 -0.02 4.18 16 44 H 0.11 4.12 7.69 -2.40 -0.02 4.10 16 45 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 46 H 0.04 1.73 7.00 -2.39 -0.02 1.71 16 47 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -92.55 388.66 2.36 -90.19 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 0.22 Total: 15.15 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: 5.71 Total: 1.13 kcal Atomic # 7 Polarization: -86.24 SS G_CDS: -4.34 Total: -90.59 kcal Atomic # 8 Polarization: -51.41 SS G_CDS: -0.09 Total: -51.50 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: -9.43 SS G_CDS: -1.16 Total: -10.59 kcal Total: -92.55 2.36 -90.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070452613.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.617 kcal (2) G-P(sol) polarization free energy of solvation -92.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds