Wall clock time and date at job start Tue Mar 31 2020 15:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52990 * 109.47420 * 2 1 4 4 H 1.09002 * 109.47337 * 305.00069 * 3 2 1 5 5 C 1.53007 * 109.47358 * 64.99742 * 3 2 1 6 6 C 1.50703 * 109.47398 * 184.99983 * 3 2 1 7 7 O 1.21283 * 119.99488 * 359.97438 * 6 3 2 8 8 N 1.34777 * 120.00290 * 180.02562 * 6 3 2 9 9 C 1.46498 * 119.99828 * 180.27728 * 8 6 3 10 10 H 1.09002 * 109.49860 * 324.72378 * 9 8 6 11 11 C 1.53043 * 109.49734 * 204.65717 * 9 8 6 12 12 C 1.53035 * 109.53902 * 178.71575 * 11 9 8 13 13 C 1.53187 * 109.34154 * 61.31532 * 12 11 9 14 14 N 1.46918 * 108.77824 * 305.38171 * 13 12 11 15 15 C 1.34778 * 120.63095 * 233.63329 * 14 13 12 16 16 O 1.21281 * 119.99846 * 179.97438 * 15 14 13 17 17 C 1.50697 * 120.00118 * 359.97044 * 15 14 13 18 18 S 1.81001 * 109.47315 * 180.02562 * 17 15 14 19 19 C 1.76201 * 100.00161 * 180.02562 * 18 17 15 20 20 H 1.08006 * 119.99773 * 0.02562 * 19 18 17 21 21 C 1.38791 * 120.00112 * 179.97438 * 19 18 17 22 22 N 1.31635 * 119.99917 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 119.99974 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47171 * 90.00198 * 23 21 19 25 25 H 1.48506 * 109.46962 * 210.00086 * 23 21 19 26 26 H 1.48495 * 109.47323 * 329.99867 * 23 21 19 27 27 C 1.46928 * 118.74131 * 53.60346 * 14 13 12 28 28 H 1.09006 * 109.47224 * 300.00532 * 1 2 3 29 29 H 1.09002 * 109.47224 * 60.00129 * 1 2 3 30 30 H 1.09001 * 109.47568 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46955 * 239.98922 * 2 1 3 32 32 H 1.09002 * 109.46740 * 120.00089 * 2 1 3 33 33 H 1.09001 * 109.46852 * 180.02562 * 5 3 2 34 34 H 1.08993 * 109.46731 * 300.00313 * 5 3 2 35 35 H 1.09003 * 109.46582 * 60.00448 * 5 3 2 36 36 H 0.97001 * 119.99727 * 359.97438 * 8 6 3 37 37 H 1.09004 * 109.45717 * 298.70715 * 11 9 8 38 38 H 1.08998 * 109.45507 * 58.65853 * 11 9 8 39 39 H 1.08999 * 109.47298 * 301.36160 * 12 11 9 40 40 H 1.09006 * 109.52362 * 181.30282 * 12 11 9 41 41 H 1.08997 * 109.58994 * 185.58843 * 13 12 11 42 42 H 1.09003 * 109.70299 * 65.24095 * 13 12 11 43 43 H 1.09001 * 109.46905 * 300.00441 * 17 15 14 44 44 H 1.08999 * 109.46834 * 59.99995 * 17 15 14 45 45 H 0.96998 * 119.99852 * 179.97438 * 22 21 19 46 46 H 1.09000 * 109.59120 * 186.60931 * 27 14 13 47 47 H 1.09003 * 109.69861 * 66.25380 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1265 1.3074 6 6 3.5419 1.4442 -0.1238 7 8 4.1450 0.3949 -0.2037 8 7 4.2150 2.6116 -0.1448 9 6 5.6746 2.6135 -0.2713 10 1 6.0870 1.7566 0.2614 11 6 6.2374 3.9053 0.3258 12 6 7.7643 3.8939 0.2230 13 6 8.1730 3.8238 -1.2516 14 7 7.5181 2.6627 -1.8692 15 6 8.2414 1.7376 -2.5307 16 8 7.6890 0.7834 -3.0358 17 6 9.7366 1.8890 -2.6427 18 16 10.4151 0.4985 -3.5820 19 6 12.1260 0.9192 -3.5586 20 1 12.4545 1.8170 -3.0560 21 6 13.0516 0.0965 -4.1851 22 7 14.3298 0.4105 -4.1671 23 14 12.4836 -1.4566 -5.0538 24 1 12.1721 -1.1449 -6.4719 25 1 13.5603 -2.4778 -4.9965 26 1 11.2670 -1.9819 -4.3836 27 6 6.0597 2.5288 -1.7516 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5140 -0.8899 32 1 1.8932 -0.5139 0.8900 33 1 1.9983 3.1543 1.3071 34 1 0.5490 2.1252 1.3969 35 1 2.0699 1.5875 2.1492 36 1 3.7327 3.4507 -0.0805 37 1 5.8433 4.7608 -0.2230 38 1 5.9439 3.9794 1.3729 39 1 8.1575 3.0254 0.7513 40 1 8.1662 4.8037 0.6692 41 1 9.2550 3.7155 -1.3262 42 1 7.8610 4.7343 -1.7632 43 1 9.9699 2.8220 -3.1558 44 1 10.1760 1.9031 -1.6453 45 1 14.9768 -0.1647 -4.6047 46 1 5.7473 1.5660 -2.1559 47 1 5.5713 3.3324 -2.3028 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070452614.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:20 Heat of formation + Delta-G solvation = -92.715350 kcal Electronic energy + Delta-G solvation = -25958.361038 eV Core-core repulsion = 22266.524257 eV Total energy + Delta-G solvation = -3691.836781 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.62805 -39.61960 -37.45478 -35.73350 -34.80543 -32.46180 -32.39938 -31.07910 -29.90870 -28.60639 -25.72571 -25.65934 -25.20635 -23.57114 -21.89399 -21.18219 -20.05690 -19.09791 -17.73363 -17.39869 -16.85702 -16.33949 -16.05915 -15.56300 -15.35091 -14.94028 -14.80423 -14.65827 -14.26004 -13.98935 -13.81264 -13.73047 -13.36126 -13.20240 -13.02523 -12.89350 -12.76522 -12.53483 -12.12379 -12.04028 -11.93365 -11.79704 -11.36083 -11.30486 -11.21215 -11.17016 -11.02225 -10.98611 -10.86382 -10.57046 -9.95082 -9.83396 -9.55130 -9.39082 -8.98246 -8.54502 -8.45827 -6.89534 -6.27181 -3.98604 2.41460 2.60514 2.88320 2.98779 3.27431 3.35651 3.54049 3.61758 4.27653 4.34767 4.36010 4.41327 4.51603 4.55699 4.64353 4.66693 4.84089 4.92098 4.99333 5.05642 5.10036 5.11595 5.12035 5.16789 5.21047 5.32985 5.40186 5.48334 5.49786 5.55816 5.59645 5.65188 5.71245 5.76411 5.77935 5.88359 5.89547 5.97184 5.99778 6.03465 6.15492 6.57152 7.21291 7.46966 7.95868 8.01033 8.42686 8.47043 9.19301 10.81937 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018697 B = 0.002558 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.173716 B =10941.840648 C =12163.712816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.108 4.108 3 C -0.110 4.110 4 H 0.097 0.903 5 C -0.145 4.145 6 C 0.513 3.487 7 O -0.526 6.526 8 N -0.727 5.727 9 C 0.131 3.869 10 H 0.093 0.907 11 C -0.124 4.124 12 C -0.132 4.132 13 C 0.104 3.896 14 N -0.617 5.617 15 C 0.533 3.467 16 O -0.513 6.513 17 C -0.120 4.120 18 S -0.143 6.143 19 C -0.520 4.520 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.881 5.881 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.106 3.894 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.399 0.601 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.094 0.906 42 H 0.069 0.931 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.270 0.730 46 H 0.097 0.903 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.241 11.466 12.767 31.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.146 4.146 3 C -0.132 4.132 4 H 0.115 0.885 5 C -0.202 4.202 6 C 0.299 3.701 7 O -0.401 6.401 8 N -0.379 5.379 9 C 0.025 3.975 10 H 0.111 0.889 11 C -0.162 4.162 12 C -0.171 4.171 13 C -0.019 4.019 14 N -0.354 5.354 15 C 0.320 3.680 16 O -0.387 6.387 17 C -0.271 4.271 18 S 0.084 5.916 19 C -0.668 4.668 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.517 5.517 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.019 4.019 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.233 0.767 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.101 0.899 41 H 0.112 0.888 42 H 0.088 0.912 43 H 0.115 0.885 44 H 0.115 0.885 45 H 0.080 0.920 46 H 0.115 0.885 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -26.417 9.209 11.897 30.401 hybrid contribution 0.539 1.070 0.196 1.214 sum -25.878 10.279 12.093 30.357 Atomic orbital electron populations 1.21842 0.95455 1.02012 1.01740 1.21357 0.95338 0.94084 1.03785 1.21366 0.91664 0.99649 1.00501 0.88493 1.21828 1.02409 1.00030 0.95956 1.20789 0.90056 0.83633 0.75610 1.90782 1.70114 1.31258 1.47952 1.46006 1.07277 1.08830 1.75773 1.21326 0.79791 0.99742 0.96643 0.88878 1.21788 0.96362 0.96672 1.01416 1.21893 0.94920 1.03459 0.96842 1.21790 0.99048 0.88455 0.92639 1.47994 1.06683 1.24724 1.55950 1.20335 0.89001 0.81409 0.77213 1.90711 1.72218 1.30131 1.45627 1.23303 0.93333 1.05191 1.05236 1.84854 1.06638 1.29540 1.70582 1.22306 0.89179 1.13719 1.41570 0.89395 1.24706 0.94057 0.97715 0.94831 1.69940 1.00841 1.38281 1.42661 0.86739 0.80532 0.83204 0.81432 1.19219 1.19945 1.15871 1.21835 0.80658 1.03927 0.95457 0.92521 0.92705 0.92390 0.90909 0.91265 0.92276 0.91135 0.92013 0.76661 0.91158 0.90980 0.90835 0.89901 0.88811 0.91223 0.88532 0.88467 0.91965 0.88464 0.91839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.67 37.16 0.36 -0.54 16 2 C -0.11 -0.88 4.75 -26.74 -0.13 -1.01 16 3 C -0.11 -0.77 2.72 -91.77 -0.25 -1.02 16 4 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 5 C -0.14 -0.70 8.84 37.16 0.33 -0.37 16 6 C 0.51 5.41 7.12 -10.98 -0.08 5.33 16 7 O -0.53 -8.34 15.59 5.55 0.09 -8.25 16 8 N -0.73 -5.87 4.97 -53.69 -0.27 -6.14 16 9 C 0.13 1.32 2.60 -67.81 -0.18 1.15 16 10 H 0.09 1.25 7.58 -51.93 -0.39 0.86 16 11 C -0.12 -0.86 5.36 -26.69 -0.14 -1.00 16 12 C -0.13 -1.04 6.08 -26.62 -0.16 -1.20 16 13 C 0.10 1.04 6.34 -3.72 -0.02 1.02 16 14 N -0.62 -8.70 2.97 -172.77 -0.51 -9.21 16 15 C 0.53 10.17 7.72 -10.99 -0.08 10.08 16 16 O -0.51 -11.94 15.27 5.56 0.08 -11.86 16 17 C -0.12 -2.40 4.50 36.00 0.16 -2.24 16 18 S -0.14 -3.72 18.55 -107.50 -1.99 -5.71 16 19 C -0.52 -15.14 10.04 30.94 0.31 -14.82 16 20 H 0.09 2.64 8.03 -52.48 -0.42 2.22 16 21 C 0.10 2.83 5.50 -17.43 -0.10 2.73 16 22 N -0.88 -26.75 13.97 55.49 0.78 -25.97 16 23 Si 0.86 22.19 27.74 -169.99 -4.71 17.47 16 24 H -0.27 -6.84 7.11 56.52 0.40 -6.43 16 25 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.23 -6.12 6.74 56.52 0.38 -5.74 16 27 C 0.11 1.35 6.01 -3.71 -0.02 1.33 16 28 H 0.06 0.27 6.57 -51.93 -0.34 -0.07 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.73 7.96 -51.93 -0.41 0.32 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.20 7.56 -51.93 -0.39 -0.20 16 34 H 0.07 0.26 6.56 -51.93 -0.34 -0.08 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.40 1.86 8.02 -40.82 -0.33 1.54 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.09 0.98 5.93 -51.93 -0.31 0.67 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.10 1.77 7.94 -51.92 -0.41 1.36 16 44 H 0.10 1.80 7.69 -51.92 -0.40 1.40 16 45 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 46 H 0.10 1.62 7.00 -51.93 -0.36 1.26 16 47 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 385.99 15.07 5.82 5.82 Total: -1.00 -37.04 385.99 -8.65 -45.69 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -7.92 Total: -1.29 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: 0.00 Total: -0.56 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: -0.01 Total: -41.32 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: 0.17 Total: -20.11 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.71 Total: 17.47 kcal Atomic # 16 Polarization: -3.72 SS G_CDS: -1.99 Total: -5.71 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -37.04 -8.65 -45.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070452614.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.023 kcal (2) G-P(sol) polarization free energy of solvation -37.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds