Wall clock time and date at job start Tue Mar 31 2020 15:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52990 * 109.47420 * 2 1 4 4 H 1.09002 * 109.47337 * 305.00069 * 3 2 1 5 5 C 1.53007 * 109.47358 * 64.99742 * 3 2 1 6 6 C 1.50703 * 109.47398 * 184.99983 * 3 2 1 7 7 O 1.21283 * 119.99488 * 359.97438 * 6 3 2 8 8 N 1.34777 * 120.00290 * 180.02562 * 6 3 2 9 9 C 1.46498 * 119.99828 * 180.27728 * 8 6 3 10 10 H 1.09002 * 109.49860 * 324.72378 * 9 8 6 11 11 C 1.53043 * 109.49734 * 204.65717 * 9 8 6 12 12 C 1.53035 * 109.53902 * 178.71575 * 11 9 8 13 13 C 1.53187 * 109.34154 * 61.31532 * 12 11 9 14 14 N 1.46918 * 108.77824 * 305.38171 * 13 12 11 15 15 C 1.34778 * 120.63095 * 233.63329 * 14 13 12 16 16 O 1.21281 * 119.99846 * 179.97438 * 15 14 13 17 17 C 1.50697 * 120.00118 * 359.97044 * 15 14 13 18 18 S 1.81001 * 109.47315 * 180.02562 * 17 15 14 19 19 C 1.76201 * 100.00161 * 180.02562 * 18 17 15 20 20 H 1.08006 * 119.99773 * 0.02562 * 19 18 17 21 21 C 1.38791 * 120.00112 * 179.97438 * 19 18 17 22 22 N 1.31635 * 119.99917 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 119.99974 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47171 * 90.00198 * 23 21 19 25 25 H 1.48506 * 109.46962 * 210.00086 * 23 21 19 26 26 H 1.48495 * 109.47323 * 329.99867 * 23 21 19 27 27 C 1.46928 * 118.74131 * 53.60346 * 14 13 12 28 28 H 1.09006 * 109.47224 * 300.00532 * 1 2 3 29 29 H 1.09002 * 109.47224 * 60.00129 * 1 2 3 30 30 H 1.09001 * 109.47568 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46955 * 239.98922 * 2 1 3 32 32 H 1.09002 * 109.46740 * 120.00089 * 2 1 3 33 33 H 1.09001 * 109.46852 * 180.02562 * 5 3 2 34 34 H 1.08993 * 109.46731 * 300.00313 * 5 3 2 35 35 H 1.09003 * 109.46582 * 60.00448 * 5 3 2 36 36 H 0.97001 * 119.99727 * 359.97438 * 8 6 3 37 37 H 1.09004 * 109.45717 * 298.70715 * 11 9 8 38 38 H 1.08998 * 109.45507 * 58.65853 * 11 9 8 39 39 H 1.08999 * 109.47298 * 301.36160 * 12 11 9 40 40 H 1.09006 * 109.52362 * 181.30282 * 12 11 9 41 41 H 1.08997 * 109.58994 * 185.58843 * 13 12 11 42 42 H 1.09003 * 109.70299 * 65.24095 * 13 12 11 43 43 H 1.09001 * 109.46905 * 300.00441 * 17 15 14 44 44 H 1.08999 * 109.46834 * 59.99995 * 17 15 14 45 45 H 0.96998 * 119.99852 * 179.97438 * 22 21 19 46 46 H 1.09000 * 109.59120 * 186.60931 * 27 14 13 47 47 H 1.09003 * 109.69861 * 66.25380 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1265 1.3074 6 6 3.5419 1.4442 -0.1238 7 8 4.1450 0.3949 -0.2037 8 7 4.2150 2.6116 -0.1448 9 6 5.6746 2.6135 -0.2713 10 1 6.0870 1.7566 0.2614 11 6 6.2374 3.9053 0.3258 12 6 7.7643 3.8939 0.2230 13 6 8.1730 3.8238 -1.2516 14 7 7.5181 2.6627 -1.8692 15 6 8.2414 1.7376 -2.5307 16 8 7.6890 0.7834 -3.0358 17 6 9.7366 1.8890 -2.6427 18 16 10.4151 0.4985 -3.5820 19 6 12.1260 0.9192 -3.5586 20 1 12.4545 1.8170 -3.0560 21 6 13.0516 0.0965 -4.1851 22 7 14.3298 0.4105 -4.1671 23 14 12.4836 -1.4566 -5.0538 24 1 12.1721 -1.1449 -6.4719 25 1 13.5603 -2.4778 -4.9965 26 1 11.2670 -1.9819 -4.3836 27 6 6.0597 2.5288 -1.7516 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5140 -0.8899 32 1 1.8932 -0.5139 0.8900 33 1 1.9983 3.1543 1.3071 34 1 0.5490 2.1252 1.3969 35 1 2.0699 1.5875 2.1492 36 1 3.7327 3.4507 -0.0805 37 1 5.8433 4.7608 -0.2230 38 1 5.9439 3.9794 1.3729 39 1 8.1575 3.0254 0.7513 40 1 8.1662 4.8037 0.6692 41 1 9.2550 3.7155 -1.3262 42 1 7.8610 4.7343 -1.7632 43 1 9.9699 2.8220 -3.1558 44 1 10.1760 1.9031 -1.6453 45 1 14.9768 -0.1647 -4.6047 46 1 5.7473 1.5660 -2.1559 47 1 5.5713 3.3324 -2.3028 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070452614.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:19 Heat of formation + Delta-G solvation = -119.197868 kcal Electronic energy + Delta-G solvation = -25959.509406 eV Core-core repulsion = 22266.524257 eV Total energy + Delta-G solvation = -3692.985149 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.60871 -40.75782 -38.58896 -36.41540 -35.81799 -34.69201 -33.38480 -32.09093 -30.82351 -29.60844 -27.88605 -26.29152 -26.25181 -24.37969 -22.64533 -22.11791 -20.90493 -20.35010 -19.52731 -18.37829 -18.07451 -17.28561 -17.26436 -17.04213 -16.63386 -16.37670 -15.78280 -15.65184 -15.39908 -15.04053 -14.98131 -14.87898 -14.46248 -14.43290 -14.22302 -13.77421 -13.60978 -13.54963 -13.37930 -13.04560 -12.98753 -12.76113 -12.67989 -12.56410 -12.46906 -12.08934 -12.02230 -11.89270 -11.74023 -11.67230 -11.60023 -11.19357 -11.06532 -10.75864 -10.53663 -10.40649 -9.66111 -9.03839 -8.53692 -6.24872 0.93206 1.28255 1.40204 1.45798 1.50306 1.61752 1.87862 2.22657 2.28961 2.66202 2.84379 3.45363 3.64449 3.72593 3.81153 3.84590 3.93695 3.97924 4.04625 4.15043 4.17064 4.34693 4.39470 4.50667 4.52611 4.53778 4.59113 4.72268 4.74081 4.77514 4.89214 4.98198 5.02057 5.04123 5.11527 5.12150 5.19096 5.26163 5.35866 5.37977 5.48517 5.55420 5.69191 6.09211 6.18738 6.53925 6.91801 7.02832 7.26903 8.58432 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018697 B = 0.002558 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.173716 B =10941.840648 C =12163.712816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.110 4.110 3 C -0.103 4.103 4 H 0.122 0.878 5 C -0.140 4.140 6 C 0.506 3.494 7 O -0.590 6.590 8 N -0.707 5.707 9 C 0.137 3.863 10 H 0.052 0.948 11 C -0.113 4.113 12 C -0.129 4.129 13 C 0.092 3.908 14 N -0.603 5.603 15 C 0.529 3.471 16 O -0.568 6.568 17 C -0.101 4.101 18 S -0.186 6.186 19 C -0.525 4.525 20 H 0.066 0.934 21 C 0.048 3.952 22 N -0.913 5.913 23 Si 0.911 3.089 24 H -0.262 1.262 25 H -0.257 1.257 26 H -0.243 1.243 27 C 0.106 3.894 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.042 0.958 32 H 0.050 0.950 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.047 0.953 36 H 0.422 0.578 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.052 0.948 40 H 0.117 0.883 41 H 0.089 0.911 42 H 0.103 0.897 43 H 0.117 0.883 44 H 0.112 0.888 45 H 0.277 0.723 46 H 0.049 0.951 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.547 14.706 13.900 34.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.148 4.148 3 C -0.124 4.124 4 H 0.140 0.860 5 C -0.197 4.197 6 C 0.294 3.706 7 O -0.470 6.470 8 N -0.360 5.360 9 C 0.031 3.969 10 H 0.070 0.930 11 C -0.151 4.151 12 C -0.167 4.167 13 C -0.029 4.029 14 N -0.338 5.338 15 C 0.316 3.684 16 O -0.447 6.447 17 C -0.252 4.252 18 S 0.041 5.959 19 C -0.672 4.672 20 H 0.085 0.915 21 C -0.158 4.158 22 N -0.551 5.551 23 Si 0.733 3.267 24 H -0.186 1.186 25 H -0.181 1.181 26 H -0.167 1.167 27 C -0.018 4.018 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.066 0.934 36 H 0.260 0.740 37 H 0.120 0.880 38 H 0.110 0.890 39 H 0.071 0.929 40 H 0.136 0.864 41 H 0.107 0.893 42 H 0.121 0.879 43 H 0.135 0.865 44 H 0.130 0.870 45 H 0.087 0.913 46 H 0.068 0.932 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -28.747 12.554 13.074 33.984 hybrid contribution 1.196 0.197 -0.072 1.214 sum -27.551 12.750 13.003 33.026 Atomic orbital electron populations 1.21802 0.93165 1.02318 1.03078 1.21344 0.97254 0.94786 1.01464 1.21407 0.88736 0.99273 1.02972 0.86022 1.21842 1.03584 1.00669 0.93626 1.21565 0.91639 0.83201 0.74198 1.90765 1.71612 1.33690 1.50919 1.45823 1.06510 1.09293 1.74344 1.21137 0.80947 1.00489 0.94355 0.92997 1.21782 0.95374 0.95188 1.02765 1.21910 0.95734 1.04264 0.94833 1.22221 0.98678 0.87620 0.94361 1.48025 1.07257 1.24431 1.54060 1.20192 0.88667 0.81799 0.77708 1.90693 1.72880 1.32591 1.48487 1.23250 0.94029 1.02890 1.04995 1.84873 1.05065 1.33593 1.72376 1.22405 0.90859 1.12936 1.41018 0.91541 1.25498 0.94223 1.00486 0.95567 1.70003 1.01775 1.39679 1.43678 0.85914 0.80160 0.80206 0.80386 1.18618 1.18126 1.16673 1.21933 0.79759 1.02483 0.97635 0.90746 0.91642 0.92744 0.93907 0.93130 0.89955 0.89265 0.93404 0.73983 0.87956 0.89024 0.92889 0.86443 0.89304 0.87898 0.86474 0.86951 0.91319 0.93248 0.88734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.67 71.98 0.70 -0.82 16 2 C -0.11 -1.86 4.75 30.59 0.15 -1.71 16 3 C -0.10 -1.30 2.72 -11.54 -0.03 -1.33 16 4 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 5 C -0.14 -0.93 8.84 71.98 0.64 -0.30 16 6 C 0.51 10.69 7.12 87.66 0.62 11.32 16 7 O -0.59 -20.23 15.59 -3.04 -0.05 -20.28 16 8 N -0.71 -10.08 4.97 -442.15 -2.20 -12.28 16 9 C 0.14 2.61 2.60 45.07 0.12 2.73 16 10 H 0.05 1.45 7.58 -2.39 -0.02 1.43 16 11 C -0.11 -1.09 5.36 30.62 0.16 -0.93 16 12 C -0.13 -1.57 6.08 30.67 0.19 -1.38 16 13 C 0.09 1.57 6.34 86.36 0.55 2.12 16 14 N -0.60 -16.47 2.97 -818.93 -2.43 -18.90 16 15 C 0.53 20.50 7.72 87.66 0.68 21.18 16 16 O -0.57 -27.70 15.27 -3.03 -0.05 -27.75 16 17 C -0.10 -4.03 4.50 71.23 0.32 -3.71 16 18 S -0.19 -9.87 18.55 -56.49 -1.05 -10.92 16 19 C -0.52 -31.09 10.04 67.95 0.68 -30.41 16 20 H 0.07 4.09 8.03 -2.91 -0.02 4.07 16 21 C 0.05 2.86 5.50 84.85 0.47 3.33 16 22 N -0.91 -56.06 13.97 21.65 0.30 -55.76 16 23 Si 0.91 46.39 27.74 68.60 1.90 48.29 16 24 H -0.26 -12.96 7.11 99.48 0.71 -12.25 16 25 H -0.26 -12.21 7.11 99.48 0.71 -11.51 16 26 H -0.24 -12.58 6.74 99.48 0.67 -11.91 16 27 C 0.11 2.64 6.01 86.36 0.52 3.16 16 28 H 0.07 0.52 6.57 -2.38 -0.02 0.50 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.04 0.95 7.96 -2.39 -0.02 0.94 16 32 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.08 0.18 7.56 -2.39 -0.02 0.17 16 34 H 0.09 0.31 6.56 -2.39 -0.02 0.30 16 35 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.42 2.22 8.02 -92.71 -0.74 1.47 16 37 H 0.10 0.44 8.14 -2.38 -0.02 0.42 16 38 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.12 0.74 8.14 -2.38 -0.02 0.72 16 41 H 0.09 1.63 5.93 -2.39 -0.01 1.62 16 42 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.12 4.19 7.94 -2.40 -0.02 4.17 16 44 H 0.11 4.14 7.69 -2.40 -0.02 4.12 16 45 H 0.28 15.74 8.31 -92.71 -0.77 14.97 16 46 H 0.05 1.75 7.00 -2.39 -0.02 1.73 16 47 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -87.83 385.99 2.36 -85.47 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: 0.18 Total: 8.89 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: 5.75 Total: 3.23 kcal Atomic # 7 Polarization: -82.61 SS G_CDS: -4.33 Total: -86.94 kcal Atomic # 8 Polarization: -47.93 SS G_CDS: -0.09 Total: -48.02 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 1.90 Total: 48.29 kcal Atomic # 16 Polarization: -9.87 SS G_CDS: -1.05 Total: -10.92 kcal Total: -87.83 2.36 -85.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070452614.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.727 kcal (2) G-P(sol) polarization free energy of solvation -87.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds