Wall clock time and date at job start Tue Mar 31 2020 15:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.50701 * 109.47212 * 179.97438 * 3 2 1 5 5 O 1.21280 * 119.99781 * 0.02562 * 4 3 2 6 6 N 1.34780 * 119.99795 * 179.97438 * 4 3 2 7 7 C 1.46921 * 120.63059 * 359.72315 * 6 4 3 8 8 C 1.53629 * 108.54224 * 126.36706 * 7 6 4 9 9 C 1.53041 * 109.24036 * 54.85265 * 8 7 6 10 10 C 1.52999 * 109.45914 * 178.48863 * 9 8 7 11 11 N 1.46499 * 109.44626 * 58.52759 * 9 8 7 12 12 C 1.34775 * 120.00080 * 59.93938 * 11 9 8 13 13 O 1.21281 * 120.00145 * 359.97438 * 12 11 9 14 14 C 1.50704 * 120.00129 * 180.02562 * 12 11 9 15 15 S 1.80993 * 109.47349 * 179.97438 * 14 12 11 16 16 C 1.76198 * 100.00320 * 180.02562 * 15 14 12 17 17 H 1.08002 * 119.99625 * 359.97438 * 16 15 14 18 18 C 1.38798 * 120.00145 * 180.02562 * 16 15 14 19 19 N 1.31628 * 120.00077 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99800 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47033 * 89.99410 * 20 18 16 22 22 H 1.48503 * 109.46971 * 209.99569 * 20 18 16 23 23 H 1.48498 * 109.46903 * 329.99148 * 20 18 16 24 24 C 1.53038 * 109.54157 * 298.51402 * 9 8 7 25 25 C 1.46926 * 120.62707 * 180.02562 * 6 4 3 26 26 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 27 27 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 29 29 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 30 30 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 31 31 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 32 32 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 33 33 H 1.08998 * 109.58542 * 246.19788 * 7 6 4 34 34 H 1.08999 * 109.58977 * 6.62636 * 7 6 4 35 35 H 1.08999 * 109.63120 * 294.86485 * 8 7 6 36 36 H 1.08993 * 109.46032 * 174.74341 * 8 7 6 37 37 H 1.09001 * 109.47478 * 180.02562 * 10 9 8 38 38 H 1.08994 * 109.47568 * 300.07809 * 10 9 8 39 39 H 1.09008 * 109.47240 * 60.07244 * 10 9 8 40 40 H 0.97003 * 119.99769 * 239.93436 * 11 9 8 41 41 H 1.09004 * 109.46521 * 299.99435 * 14 12 11 42 42 H 1.08997 * 109.47087 * 59.99414 * 14 12 11 43 43 H 0.97003 * 120.00009 * 180.02562 * 19 18 16 44 44 H 1.09002 * 109.49670 * 301.41329 * 24 9 8 45 45 H 1.09002 * 109.52529 * 181.33535 * 24 9 8 46 46 H 1.09003 * 109.58886 * 353.37482 * 25 6 4 47 47 H 1.08992 * 109.58644 * 113.65764 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 8 4.1533 0.3920 0.0006 6 7 4.2209 2.6096 0.0002 7 6 3.5004 3.8900 -0.0070 8 6 4.0081 4.7428 1.1657 9 6 5.5295 4.8776 1.0697 10 6 6.0365 5.7575 2.2141 11 7 5.8849 5.4914 -0.2121 12 6 5.4277 6.7212 -0.5201 13 8 4.7217 7.3196 0.2637 14 6 5.7928 7.3524 -1.8390 15 16 5.0313 8.9902 -1.9554 16 6 5.6059 9.4825 -3.5467 17 1 6.2358 8.8202 -4.1220 18 6 5.2500 10.7219 -4.0603 19 7 4.4827 11.5293 -3.3588 20 14 5.8599 11.2440 -5.7470 21 1 4.8854 10.8126 -6.7811 22 1 6.0019 12.7217 -5.7864 23 1 7.1773 10.6129 -6.0141 24 6 6.1732 3.4926 1.1677 25 6 5.6901 2.6257 0.0003 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.6867 4.4088 -0.9472 34 1 2.4317 3.7085 0.1072 35 1 3.7440 4.2635 2.1084 36 1 3.5516 5.7315 1.1200 37 1 7.1200 5.8540 2.1458 38 1 5.5781 6.7439 2.1446 39 1 5.7725 5.3007 3.1681 40 1 6.4494 5.0126 -0.8391 41 1 6.8764 7.4495 -1.9076 42 1 5.4318 6.7254 -2.6542 43 1 4.2337 12.3953 -3.7180 44 1 5.8888 3.0251 2.1104 45 1 7.2579 3.5910 1.1232 46 1 6.0667 1.6097 0.1191 47 1 6.0510 3.0413 -0.9404 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072826599.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:57 Heat of formation + Delta-G solvation = -88.429793 kcal Electronic energy + Delta-G solvation = -26425.192908 eV Core-core repulsion = 22733.541963 eV Total energy + Delta-G solvation = -3691.650945 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.92308 -39.54889 -37.45132 -34.73980 -34.68649 -32.46191 -32.09616 -31.53019 -29.13032 -28.56549 -27.67482 -25.51220 -23.80975 -23.61168 -22.05749 -21.15021 -19.85185 -18.80758 -17.94693 -17.35691 -16.45295 -16.29368 -16.15102 -15.47874 -15.15293 -14.83312 -14.81236 -14.27194 -14.14726 -14.07666 -13.76105 -13.60956 -13.29212 -13.26678 -12.83780 -12.66143 -12.35847 -12.33248 -12.16974 -11.96896 -11.90036 -11.76700 -11.43528 -11.39405 -11.09456 -11.05649 -11.02662 -10.98397 -10.79128 -10.73785 -9.93436 -9.84302 -9.23688 -9.10507 -9.03793 -8.74567 -8.27730 -6.53333 -6.25127 -3.95539 2.42901 2.74788 2.99081 3.03935 3.19914 3.25672 3.29500 3.66522 4.17467 4.21935 4.43995 4.50416 4.60899 4.66018 4.73340 4.81995 4.97546 5.02645 5.10342 5.11589 5.18737 5.22137 5.28319 5.32906 5.44554 5.46605 5.49264 5.56712 5.63993 5.69510 5.71772 5.75201 5.84101 5.86172 5.88734 5.89845 6.00783 6.05356 6.10734 6.32577 6.34958 6.68294 7.16812 7.56505 7.69369 7.96367 8.31931 8.58258 9.20638 10.82206 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015277 B = 0.002694 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.394174 B =10391.061562 C =11240.287589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.108 4.108 3 C -0.142 4.142 4 C 0.515 3.485 5 O -0.548 6.548 6 N -0.611 5.611 7 C 0.109 3.891 8 C -0.146 4.146 9 C 0.181 3.819 10 C -0.164 4.164 11 N -0.732 5.732 12 C 0.536 3.464 13 O -0.512 6.512 14 C -0.155 4.155 15 S -0.058 6.058 16 C -0.536 4.536 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.918 3.082 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C -0.135 4.135 25 C 0.110 3.890 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.104 0.896 37 H 0.055 0.945 38 H 0.084 0.916 39 H 0.058 0.942 40 H 0.396 0.604 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.268 0.732 44 H 0.081 0.919 45 H 0.082 0.918 46 H 0.094 0.906 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.652 -20.252 8.948 22.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.146 4.146 3 C -0.182 4.182 4 C 0.304 3.696 5 O -0.425 6.425 6 N -0.345 5.345 7 C -0.014 4.014 8 C -0.185 4.185 9 C 0.094 3.906 10 C -0.222 4.222 11 N -0.387 5.387 12 C 0.322 3.678 13 O -0.387 6.387 14 C -0.306 4.306 15 S 0.169 5.831 16 C -0.684 4.684 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.503 5.503 20 Si 0.744 3.256 21 H -0.203 1.203 22 H -0.207 1.207 23 H -0.197 1.197 24 C -0.173 4.173 25 C -0.013 4.013 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.090 0.910 36 H 0.122 0.878 37 H 0.074 0.926 38 H 0.103 0.897 39 H 0.077 0.923 40 H 0.230 0.770 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.078 0.922 44 H 0.100 0.900 45 H 0.101 0.899 46 H 0.112 0.888 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.602 -19.631 10.274 22.309 hybrid contribution 1.560 -0.367 -2.342 2.837 sum -1.042 -19.998 7.932 21.539 Atomic orbital electron populations 1.21798 0.95425 1.01938 1.01933 1.21278 0.95311 0.94655 1.03404 1.21768 0.91803 1.00132 1.04456 1.20787 0.90450 0.83007 0.75368 1.90675 1.70514 1.31009 1.50344 1.48190 1.06769 1.06250 1.73258 1.21871 0.96465 0.83217 0.99810 1.22436 0.95662 1.02314 0.98074 1.20177 0.94226 0.91724 0.84444 1.22217 1.01265 1.02096 0.96596 1.46215 1.54486 1.18320 1.19643 1.20231 0.79149 0.80262 0.88126 1.90631 1.36110 1.61727 1.50223 1.23555 1.05208 1.05380 0.96456 1.85343 1.65714 1.07820 1.24251 1.22863 1.37019 1.05261 1.03263 0.90999 1.24984 0.94798 0.95394 0.98370 1.70011 1.33716 1.09299 1.37259 0.86182 0.79120 0.77851 0.82439 1.20264 1.20738 1.19712 1.22224 1.01033 0.94304 0.99777 1.21563 0.79866 1.01708 0.98120 0.92573 0.92436 0.92633 0.91325 0.91371 0.88842 0.88788 0.90758 0.89571 0.91027 0.87786 0.92602 0.89682 0.92264 0.76972 0.89390 0.89456 0.92176 0.90015 0.89949 0.88778 0.91502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 37.15 0.37 -0.62 16 2 C -0.11 -0.89 5.22 -26.74 -0.14 -1.03 16 3 C -0.14 -1.14 4.05 -27.88 -0.11 -1.26 16 4 C 0.51 5.65 7.70 -10.98 -0.08 5.57 16 5 O -0.55 -7.79 15.40 5.56 0.09 -7.71 16 6 N -0.61 -6.04 2.97 -172.48 -0.51 -6.56 16 7 C 0.11 1.05 6.11 -3.49 -0.02 1.03 16 8 C -0.15 -1.54 4.68 -26.38 -0.12 -1.66 16 9 C 0.18 1.87 0.66 -131.78 -0.09 1.78 16 10 C -0.16 -1.84 8.40 37.16 0.31 -1.53 16 11 N -0.73 -8.56 4.09 -47.57 -0.19 -8.76 16 12 C 0.54 8.84 7.27 -10.98 -0.08 8.76 16 13 O -0.51 -10.05 12.08 5.56 0.07 -9.98 16 14 C -0.16 -2.93 6.16 36.01 0.22 -2.71 16 15 S -0.06 -1.50 20.57 -107.50 -2.21 -3.71 16 16 C -0.54 -14.89 9.50 30.94 0.29 -14.60 16 17 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 18 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 19 N -0.87 -25.67 13.22 55.49 0.73 -24.93 16 20 Si 0.92 21.08 29.55 -169.99 -5.02 16.06 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 24 C -0.13 -1.11 4.96 -26.59 -0.13 -1.24 16 25 C 0.11 1.00 6.15 -3.69 -0.02 0.98 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 30 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 31 H 0.09 0.62 7.70 -51.93 -0.40 0.22 16 32 H 0.09 0.67 7.93 -51.93 -0.41 0.25 16 33 H 0.07 0.82 7.73 -51.93 -0.40 0.42 16 34 H 0.09 0.69 5.93 -51.93 -0.31 0.38 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.10 1.39 6.20 -51.93 -0.32 1.07 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 1.23 6.17 -51.93 -0.32 0.91 16 39 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 40 H 0.40 3.79 7.27 -40.82 -0.30 3.49 16 41 H 0.09 1.57 8.14 -51.91 -0.42 1.14 16 42 H 0.09 1.53 8.14 -51.92 -0.42 1.11 16 43 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.09 0.94 7.01 -51.93 -0.36 0.58 16 47 H 0.07 0.56 6.95 -51.93 -0.36 0.20 16 LS Contribution 382.09 15.07 5.76 5.76 Total: -1.00 -33.65 382.09 -8.80 -42.45 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -7.80 Total: 1.93 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: 0.30 Total: -4.55 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: 0.03 Total: -40.25 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: 0.15 Total: -17.69 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.65 -8.80 -42.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072826599.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.980 kcal (2) G-P(sol) polarization free energy of solvation -33.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds