Wall clock time and date at job start Tue Mar 31 2020 15:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.50701 * 109.47212 * 179.97438 * 3 2 1 5 5 O 1.21280 * 119.99781 * 0.02562 * 4 3 2 6 6 N 1.34780 * 119.99795 * 179.97438 * 4 3 2 7 7 C 1.46921 * 120.63059 * 359.72315 * 6 4 3 8 8 C 1.53629 * 108.54224 * 126.36706 * 7 6 4 9 9 C 1.53041 * 109.24036 * 54.85265 * 8 7 6 10 10 C 1.52999 * 109.45914 * 178.48863 * 9 8 7 11 11 N 1.46499 * 109.44626 * 58.52759 * 9 8 7 12 12 C 1.34775 * 120.00080 * 59.93938 * 11 9 8 13 13 O 1.21281 * 120.00145 * 359.97438 * 12 11 9 14 14 C 1.50704 * 120.00129 * 180.02562 * 12 11 9 15 15 S 1.80993 * 109.47349 * 179.97438 * 14 12 11 16 16 C 1.76198 * 100.00320 * 180.02562 * 15 14 12 17 17 H 1.08002 * 119.99625 * 359.97438 * 16 15 14 18 18 C 1.38798 * 120.00145 * 180.02562 * 16 15 14 19 19 N 1.31628 * 120.00077 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99800 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47033 * 89.99410 * 20 18 16 22 22 H 1.48503 * 109.46971 * 209.99569 * 20 18 16 23 23 H 1.48498 * 109.46903 * 329.99148 * 20 18 16 24 24 C 1.53038 * 109.54157 * 298.51402 * 9 8 7 25 25 C 1.46926 * 120.62707 * 180.02562 * 6 4 3 26 26 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 27 27 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 29 29 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 30 30 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 31 31 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 32 32 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 33 33 H 1.08998 * 109.58542 * 246.19788 * 7 6 4 34 34 H 1.08999 * 109.58977 * 6.62636 * 7 6 4 35 35 H 1.08999 * 109.63120 * 294.86485 * 8 7 6 36 36 H 1.08993 * 109.46032 * 174.74341 * 8 7 6 37 37 H 1.09001 * 109.47478 * 180.02562 * 10 9 8 38 38 H 1.08994 * 109.47568 * 300.07809 * 10 9 8 39 39 H 1.09008 * 109.47240 * 60.07244 * 10 9 8 40 40 H 0.97003 * 119.99769 * 239.93436 * 11 9 8 41 41 H 1.09004 * 109.46521 * 299.99435 * 14 12 11 42 42 H 1.08997 * 109.47087 * 59.99414 * 14 12 11 43 43 H 0.97003 * 120.00009 * 180.02562 * 19 18 16 44 44 H 1.09002 * 109.49670 * 301.41329 * 24 9 8 45 45 H 1.09002 * 109.52529 * 181.33535 * 24 9 8 46 46 H 1.09003 * 109.58886 * 353.37482 * 25 6 4 47 47 H 1.08992 * 109.58644 * 113.65764 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 8 4.1533 0.3920 0.0006 6 7 4.2209 2.6096 0.0002 7 6 3.5004 3.8900 -0.0070 8 6 4.0081 4.7428 1.1657 9 6 5.5295 4.8776 1.0697 10 6 6.0365 5.7575 2.2141 11 7 5.8849 5.4914 -0.2121 12 6 5.4277 6.7212 -0.5201 13 8 4.7217 7.3196 0.2637 14 6 5.7928 7.3524 -1.8390 15 16 5.0313 8.9902 -1.9554 16 6 5.6059 9.4825 -3.5467 17 1 6.2358 8.8202 -4.1220 18 6 5.2500 10.7219 -4.0603 19 7 4.4827 11.5293 -3.3588 20 14 5.8599 11.2440 -5.7470 21 1 4.8854 10.8126 -6.7811 22 1 6.0019 12.7217 -5.7864 23 1 7.1773 10.6129 -6.0141 24 6 6.1732 3.4926 1.1677 25 6 5.6901 2.6257 0.0003 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.6867 4.4088 -0.9472 34 1 2.4317 3.7085 0.1072 35 1 3.7440 4.2635 2.1084 36 1 3.5516 5.7315 1.1200 37 1 7.1200 5.8540 2.1458 38 1 5.5781 6.7439 2.1446 39 1 5.7725 5.3007 3.1681 40 1 6.4494 5.0126 -0.8391 41 1 6.8764 7.4495 -1.9076 42 1 5.4318 6.7254 -2.6542 43 1 4.2337 12.3953 -3.7180 44 1 5.8888 3.0251 2.1104 45 1 7.2579 3.5910 1.1232 46 1 6.0667 1.6097 0.1191 47 1 6.0510 3.0413 -0.9404 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072826599.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:56 Heat of formation + Delta-G solvation = -109.849596 kcal Electronic energy + Delta-G solvation = -26426.121740 eV Core-core repulsion = 22733.541963 eV Total energy + Delta-G solvation = -3692.579778 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.85952 -40.58859 -38.52191 -35.70940 -35.35393 -34.57223 -33.25563 -32.29845 -30.23545 -29.67256 -28.37236 -27.63604 -24.56948 -24.45030 -22.84311 -22.15916 -20.80394 -19.85090 -19.69925 -18.25285 -17.77594 -17.13508 -16.95486 -16.86838 -16.51272 -16.40463 -15.79712 -15.53394 -15.12918 -15.00141 -14.76536 -14.63854 -14.45020 -14.32592 -14.02070 -13.67011 -13.54232 -13.15454 -13.10216 -12.93807 -12.89972 -12.82530 -12.68562 -12.61337 -12.57614 -12.21273 -12.04368 -11.86610 -11.70385 -11.64733 -11.62526 -11.13388 -10.79548 -10.54577 -10.24218 -10.10103 -9.63793 -8.62445 -8.33928 -6.10029 1.29069 1.41943 1.48128 1.58408 1.60126 1.71251 1.97770 2.26877 2.34729 3.00311 3.33780 3.46402 3.64859 3.73049 3.87121 3.97444 4.01000 4.06226 4.10022 4.25896 4.31813 4.36994 4.45127 4.55083 4.58687 4.66235 4.68868 4.72610 4.76488 4.79485 4.82971 4.88631 4.98971 4.99151 5.08912 5.16583 5.22127 5.26728 5.37623 5.42987 5.44313 5.55007 5.65269 6.20633 6.35626 6.60578 7.08144 7.13895 7.34566 8.74889 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015277 B = 0.002694 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.394174 B =10391.061562 C =11240.287589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.106 4.106 3 C -0.139 4.139 4 C 0.510 3.490 5 O -0.585 6.585 6 N -0.608 5.608 7 C 0.113 3.887 8 C -0.143 4.143 9 C 0.179 3.821 10 C -0.160 4.160 11 N -0.708 5.708 12 C 0.541 3.459 13 O -0.547 6.547 14 C -0.133 4.133 15 S -0.141 6.141 16 C -0.547 4.547 17 H 0.079 0.921 18 C 0.015 3.985 19 N -0.910 5.910 20 Si 0.994 3.006 21 H -0.268 1.268 22 H -0.278 1.278 23 H -0.260 1.260 24 C -0.121 4.121 25 C 0.106 3.894 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.112 0.888 32 H 0.107 0.893 33 H 0.061 0.939 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.049 0.951 39 H 0.078 0.922 40 H 0.410 0.590 41 H 0.102 0.898 42 H 0.104 0.896 43 H 0.271 0.729 44 H 0.089 0.911 45 H 0.101 0.899 46 H 0.087 0.913 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.953 -21.730 8.426 23.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.145 4.145 3 C -0.179 4.179 4 C 0.301 3.699 5 O -0.465 6.465 6 N -0.340 5.340 7 C -0.009 4.009 8 C -0.182 4.182 9 C 0.094 3.906 10 C -0.218 4.218 11 N -0.363 5.363 12 C 0.326 3.674 13 O -0.424 6.424 14 C -0.285 4.285 15 S 0.086 5.914 16 C -0.695 4.695 17 H 0.098 0.902 18 C -0.190 4.190 19 N -0.546 5.546 20 Si 0.816 3.184 21 H -0.193 1.193 22 H -0.204 1.204 23 H -0.184 1.184 24 C -0.159 4.159 25 C -0.017 4.017 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.130 0.870 32 H 0.125 0.875 33 H 0.080 0.920 34 H 0.123 0.877 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.097 0.903 40 H 0.247 0.753 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.080 0.920 44 H 0.107 0.893 45 H 0.120 0.880 46 H 0.105 0.895 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.880 -21.139 9.755 23.357 hybrid contribution 1.368 -0.006 -2.097 2.504 sum -0.513 -21.146 7.657 22.495 Atomic orbital electron populations 1.21769 0.93905 1.02414 1.02591 1.21238 0.96553 0.94558 1.02111 1.21825 0.89765 1.00354 1.05922 1.21285 0.91567 0.82571 0.74521 1.90660 1.71450 1.32250 1.52177 1.48234 1.07174 1.06035 1.72568 1.21836 0.97620 0.82742 0.98716 1.22364 0.95499 1.01049 0.99269 1.20342 0.94530 0.92644 0.83130 1.22161 1.01293 1.00465 0.97916 1.45974 1.53327 1.16548 1.20441 1.19822 0.79175 0.81428 0.86936 1.90644 1.37854 1.63005 1.50875 1.23407 1.05258 1.01077 0.98722 1.85462 1.67565 1.13693 1.24634 1.23203 1.36945 1.05743 1.03581 0.90249 1.26062 0.94807 0.95391 1.02751 1.70168 1.35224 1.09812 1.39436 0.85015 0.79002 0.77436 0.76927 1.19346 1.20355 1.18403 1.22140 1.01939 0.92131 0.99740 1.21656 0.79531 1.01570 0.98915 0.92063 0.92139 0.91767 0.92844 0.92518 0.86963 0.87472 0.92025 0.87675 0.89464 0.90633 0.92027 0.93193 0.90322 0.75304 0.87946 0.87794 0.92035 0.89252 0.88035 0.89480 0.90656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 71.98 0.71 -0.95 16 2 C -0.11 -1.63 5.22 30.59 0.16 -1.47 16 3 C -0.14 -1.98 4.05 29.85 0.12 -1.86 16 4 C 0.51 10.45 7.70 87.66 0.67 11.13 16 5 O -0.58 -16.26 15.40 -3.03 -0.05 -16.30 16 6 N -0.61 -10.81 2.97 -818.00 -2.43 -13.23 16 7 C 0.11 1.98 6.11 86.51 0.53 2.51 16 8 C -0.14 -2.80 4.68 30.82 0.14 -2.66 16 9 C 0.18 3.36 0.66 3.63 0.00 3.36 16 10 C -0.16 -3.37 8.40 71.98 0.60 -2.76 16 11 N -0.71 -15.29 4.09 -422.80 -1.73 -17.02 16 12 C 0.54 17.52 7.27 87.66 0.64 18.15 16 13 O -0.55 -21.84 12.08 -3.03 -0.04 -21.88 16 14 C -0.13 -4.94 6.16 71.24 0.44 -4.50 16 15 S -0.14 -7.47 20.57 -56.49 -1.16 -8.63 16 16 C -0.55 -30.52 9.50 67.95 0.65 -29.87 16 17 H 0.08 4.14 7.80 -2.91 -0.02 4.12 16 18 C 0.01 0.83 5.49 84.86 0.47 1.29 16 19 N -0.91 -54.87 13.22 21.65 0.29 -54.59 16 20 Si 0.99 42.98 29.55 68.60 2.03 45.01 16 21 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 22 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 23 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 24 C -0.12 -1.64 4.96 30.68 0.15 -1.48 16 25 C 0.11 1.68 6.15 86.38 0.53 2.21 16 26 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.05 0.97 8.10 -2.39 -0.02 0.95 16 30 H 0.06 0.99 8.10 -2.39 -0.02 0.97 16 31 H 0.11 1.19 7.70 -2.39 -0.02 1.17 16 32 H 0.11 1.27 7.93 -2.39 -0.02 1.25 16 33 H 0.06 1.26 7.73 -2.39 -0.02 1.24 16 34 H 0.11 1.43 5.93 -2.39 -0.01 1.42 16 35 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.08 2.01 6.20 -2.39 -0.01 1.99 16 37 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.05 1.44 6.17 -2.39 -0.01 1.43 16 39 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 40 H 0.41 6.71 7.27 -92.71 -0.67 6.03 16 41 H 0.10 3.50 8.14 -2.39 -0.02 3.48 16 42 H 0.10 3.50 8.14 -2.40 -0.02 3.48 16 43 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 44 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.09 1.59 7.01 -2.39 -0.02 1.57 16 47 H 0.08 1.07 6.95 -2.39 -0.02 1.05 16 Total: -1.00 -75.47 382.09 3.02 -72.45 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 0.29 Total: 21.10 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: 5.82 Total: -6.90 kcal Atomic # 7 Polarization: -80.97 SS G_CDS: -3.87 Total: -84.84 kcal Atomic # 8 Polarization: -38.10 SS G_CDS: -0.08 Total: -38.18 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 16 Polarization: -7.47 SS G_CDS: -1.16 Total: -8.63 kcal Total: -75.47 3.02 -72.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072826599.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.398 kcal (2) G-P(sol) polarization free energy of solvation -75.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds