Wall clock time and date at job start Tue Mar 31 2020 15:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47303 * 2 1 4 4 C 1.50697 * 109.47099 * 120.00290 * 2 1 3 5 5 O 1.21279 * 120.00081 * 340.27858 * 4 2 1 6 6 N 1.34784 * 120.00290 * 160.28591 * 4 2 1 7 7 C 1.46938 * 120.59986 * 355.74420 * 6 4 2 8 8 C 1.53195 * 108.77073 * 233.58042 * 7 6 4 9 9 C 1.53043 * 109.33841 * 305.41747 * 8 7 6 10 10 C 1.52997 * 109.46253 * 181.37084 * 9 8 7 11 11 N 1.46498 * 109.45657 * 301.34152 * 9 8 7 12 12 C 1.34783 * 120.00169 * 180.02562 * 11 9 8 13 13 O 1.21283 * 119.99351 * 359.97438 * 12 11 9 14 14 C 1.50697 * 120.00244 * 180.02562 * 12 11 9 15 15 S 1.81006 * 109.46973 * 179.97438 * 14 12 11 16 16 C 1.76199 * 99.99679 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00391 * 0.02562 * 16 15 14 18 18 C 1.38804 * 119.99906 * 180.02562 * 16 15 14 19 19 N 1.31626 * 119.99562 * 359.97438 * 18 16 15 20 20 Si 1.86792 * 120.00136 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47222 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47374 * 119.99707 * 20 18 16 23 23 H 1.48497 * 109.47111 * 240.00036 * 20 18 16 24 24 C 1.53036 * 109.53901 * 61.34546 * 9 8 7 25 25 C 1.46919 * 120.63428 * 175.77110 * 6 4 2 26 26 H 1.09000 * 109.46934 * 299.99808 * 1 2 3 27 27 H 1.08999 * 109.47284 * 59.99773 * 1 2 3 28 28 H 1.09002 * 109.47161 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47582 * 240.00116 * 2 1 3 30 30 H 1.09003 * 109.47281 * 302.70163 * 3 2 1 31 31 H 1.08999 * 109.46957 * 62.70482 * 3 2 1 32 32 H 1.09000 * 109.47175 * 182.70495 * 3 2 1 33 33 H 1.08990 * 109.56207 * 113.81013 * 7 6 4 34 34 H 1.09002 * 109.61830 * 353.38039 * 7 6 4 35 35 H 1.08997 * 109.49956 * 185.44740 * 8 7 6 36 36 H 1.09003 * 109.50133 * 65.37973 * 8 7 6 37 37 H 1.09004 * 109.46837 * 59.99310 * 10 9 8 38 38 H 1.08996 * 109.47082 * 180.02562 * 10 9 8 39 39 H 1.09008 * 109.46715 * 299.99820 * 10 9 8 40 40 H 0.97004 * 120.00376 * 359.97438 * 11 9 8 41 41 H 1.08997 * 109.47131 * 299.99643 * 14 12 11 42 42 H 1.08997 * 109.47068 * 60.00106 * 14 12 11 43 43 H 0.97008 * 119.99631 * 179.97438 * 19 18 16 44 44 H 1.09004 * 109.49915 * 58.59164 * 24 9 8 45 45 H 1.09007 * 109.49876 * 178.64928 * 24 9 8 46 46 H 1.09002 * 109.58782 * 6.59812 * 25 6 4 47 47 H 1.09000 * 109.70405 * 246.24369 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 1.3023 -0.8542 2.1881 6 7 3.2929 -1.1860 1.2666 7 6 4.1583 -1.1021 0.0821 8 6 4.7008 -2.4999 -0.2321 9 6 5.3892 -3.0676 1.0112 10 6 5.9620 -4.4496 0.6905 11 7 6.4745 -2.1724 1.4198 12 6 7.2254 -2.4720 2.4982 13 8 7.0023 -3.4826 3.1305 14 6 8.3414 -1.5508 2.9188 15 16 9.1560 -2.2221 4.3893 16 6 10.3810 -0.9834 4.6527 17 1 10.4435 -0.1354 3.9868 18 6 11.2658 -1.0974 5.7160 19 7 11.1894 -2.1306 6.5279 20 14 12.5641 0.2162 5.9957 21 1 12.4398 1.2652 4.9520 22 1 12.3710 0.8256 7.3361 23 1 13.9140 -0.3982 5.9210 24 6 4.3728 -3.1884 2.1489 25 6 3.8271 -1.7984 2.4906 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6377 1.9702 -0.8648 31 1 1.7168 1.9421 0.9132 32 1 3.1289 1.4429 -0.0485 33 1 4.9882 -0.4249 0.2837 34 1 3.5820 -0.7345 -0.7669 35 1 5.4198 -2.4360 -1.0489 36 1 3.8777 -3.1529 -0.5223 37 1 6.6869 -4.3635 -0.1190 38 1 6.4519 -4.8543 1.5761 39 1 5.1546 -5.1157 0.3860 40 1 6.6531 -1.3643 0.9138 41 1 9.0660 -1.4646 2.1091 42 1 7.9332 -0.5664 3.1475 43 1 11.8080 -2.2105 7.2708 44 1 3.5523 -3.8347 1.8367 45 1 4.8581 -3.6152 3.0267 46 1 3.0320 -1.8897 3.2306 47 1 4.6298 -1.1792 2.8912 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072878290.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:03 Heat of formation + Delta-G solvation = -83.053671 kcal Electronic energy + Delta-G solvation = -26737.775068 eV Core-core repulsion = 23046.357249 eV Total energy + Delta-G solvation = -3691.417819 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.99561 -39.62848 -37.46757 -34.96055 -34.55346 -32.44605 -32.07147 -31.36848 -28.88714 -28.36736 -27.49209 -25.49872 -24.58406 -23.82361 -22.36490 -21.17252 -19.66634 -18.72679 -17.98999 -17.62656 -16.45060 -16.12336 -15.87267 -15.43356 -15.15349 -14.82112 -14.43523 -14.27031 -14.22878 -14.01974 -13.78312 -13.76078 -13.26388 -12.97679 -12.78268 -12.65281 -12.59030 -12.37317 -12.24429 -12.06276 -11.94270 -11.72279 -11.53400 -11.48692 -11.29236 -11.08789 -11.04122 -10.94201 -10.76713 -10.69196 -9.83698 -9.81528 -9.21154 -9.09533 -9.01141 -8.72849 -8.24989 -6.51321 -6.23571 -3.93769 2.43282 2.74610 3.00473 3.06635 3.20225 3.26878 3.31077 3.67697 4.12847 4.18716 4.26928 4.45055 4.54472 4.61226 4.68277 4.84228 4.90424 4.94056 5.10268 5.11918 5.20217 5.25353 5.27285 5.35380 5.43314 5.46252 5.48766 5.54626 5.59850 5.66044 5.72652 5.75906 5.80088 5.85111 5.88486 5.93861 5.96590 6.09534 6.12172 6.35007 6.40155 6.70423 7.18755 7.58163 7.70569 7.98741 8.33584 8.60841 9.22143 10.83842 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017950 B = 0.002742 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.492049 B =10208.662884 C =10923.669132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.116 4.116 3 C -0.143 4.143 4 C 0.517 3.483 5 O -0.541 6.541 6 N -0.609 5.609 7 C 0.104 3.896 8 C -0.137 4.137 9 C 0.181 3.819 10 C -0.164 4.164 11 N -0.732 5.732 12 C 0.535 3.465 13 O -0.511 6.511 14 C -0.155 4.155 15 S -0.058 6.058 16 C -0.535 4.535 17 H 0.072 0.928 18 C 0.073 3.927 19 N -0.867 5.867 20 Si 0.918 3.082 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.280 1.280 24 C -0.144 4.144 25 C 0.114 3.886 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.092 0.908 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.055 0.945 38 H 0.084 0.916 39 H 0.058 0.942 40 H 0.395 0.605 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.268 0.732 44 H 0.069 0.931 45 H 0.102 0.898 46 H 0.091 0.909 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.199 3.707 -19.530 26.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.137 4.137 3 C -0.200 4.200 4 C 0.305 3.695 5 O -0.417 6.417 6 N -0.343 5.343 7 C -0.020 4.020 8 C -0.176 4.176 9 C 0.095 3.905 10 C -0.222 4.222 11 N -0.387 5.387 12 C 0.322 3.678 13 O -0.385 6.385 14 C -0.305 4.305 15 S 0.168 5.832 16 C -0.683 4.683 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.183 4.183 25 C -0.008 4.008 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.110 0.890 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.108 0.892 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.074 0.926 38 H 0.103 0.897 39 H 0.077 0.923 40 H 0.229 0.771 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.078 0.922 44 H 0.088 0.912 45 H 0.121 0.879 46 H 0.110 0.890 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -17.895 1.844 -17.786 25.298 hybrid contribution 1.397 2.373 -0.888 2.893 sum -16.498 4.217 -18.674 25.272 Atomic orbital electron populations 1.21639 0.92518 1.02597 1.02424 1.21337 0.98292 0.97508 0.96588 1.21761 1.01378 0.93811 1.03074 1.20702 0.80965 0.78329 0.89455 1.90692 1.55369 1.57816 1.37849 1.48158 1.12805 1.59796 1.13503 1.21813 0.94643 0.97353 0.88148 1.22239 1.01010 0.96784 0.97546 1.20173 0.86557 0.90524 0.93282 1.22217 1.01120 0.95460 1.03364 1.46187 1.34441 1.26774 1.31274 1.20232 0.81983 0.86326 0.79274 1.90639 1.68687 1.26315 1.52884 1.23546 0.98942 1.01894 1.06150 1.85383 1.37879 1.32838 1.27071 1.22900 1.18721 1.09980 1.16728 0.90958 1.24992 0.97366 0.96342 0.94916 1.70026 1.36604 1.28182 1.15430 0.86123 0.80469 0.80682 0.78258 1.19643 1.20561 1.20573 1.22346 0.98143 0.96909 1.00905 1.21582 0.99071 0.93673 0.86429 0.91501 0.92006 0.92358 0.88971 0.91300 0.91874 0.92029 0.91112 0.89210 0.89799 0.89908 0.92619 0.89678 0.92269 0.77088 0.89400 0.89471 0.92234 0.91191 0.87920 0.89049 0.91184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.01 8.66 37.15 0.32 -0.69 16 2 C -0.12 -0.86 2.41 -91.77 -0.22 -1.08 16 3 C -0.14 -0.89 9.05 37.16 0.34 -0.56 16 4 C 0.52 5.80 6.85 -10.98 -0.08 5.72 16 5 O -0.54 -8.31 15.45 5.56 0.09 -8.22 16 6 N -0.61 -6.11 2.97 -172.77 -0.51 -6.63 16 7 C 0.10 0.69 5.44 -3.70 -0.02 0.67 16 8 C -0.14 -0.95 4.96 -26.61 -0.13 -1.08 16 9 C 0.18 1.89 0.66 -131.78 -0.09 1.80 16 10 C -0.16 -1.85 8.40 37.16 0.31 -1.54 16 11 N -0.73 -8.58 4.10 -47.57 -0.20 -8.78 16 12 C 0.54 9.07 7.27 -10.98 -0.08 8.99 16 13 O -0.51 -10.41 12.08 5.56 0.07 -10.34 16 14 C -0.15 -2.96 6.16 36.00 0.22 -2.74 16 15 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 16 C -0.54 -15.02 9.50 30.94 0.29 -14.73 16 17 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 18 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 19 N -0.87 -25.95 13.22 55.49 0.73 -25.22 16 20 Si 0.92 21.26 29.55 -169.99 -5.02 16.23 16 21 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 C -0.14 -1.75 4.67 -26.62 -0.12 -1.87 16 25 C 0.11 1.42 6.18 -3.72 -0.02 1.39 16 26 H 0.07 0.61 7.90 -51.93 -0.41 0.19 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.09 0.49 6.36 -51.93 -0.33 0.16 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.35 7.43 -51.93 -0.39 -0.03 16 33 H 0.07 0.43 6.94 -51.93 -0.36 0.07 16 34 H 0.09 0.40 5.30 -51.93 -0.28 0.12 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 1.26 6.17 -51.93 -0.32 0.94 16 39 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 40 H 0.39 3.59 7.27 -40.82 -0.30 3.29 16 41 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 42 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 43 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.10 1.56 6.20 -51.92 -0.32 1.24 16 46 H 0.09 1.29 7.00 -51.93 -0.36 0.92 16 47 H 0.07 0.94 7.74 -51.93 -0.40 0.54 16 LS Contribution 378.94 15.07 5.71 5.71 Total: -1.00 -34.91 378.94 -8.38 -43.29 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -7.66 Total: 1.44 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: 0.63 Total: -3.74 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 0.03 Total: -40.62 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: 0.15 Total: -18.57 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.91 -8.38 -43.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072878290.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.765 kcal (2) G-P(sol) polarization free energy of solvation -34.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds