Wall clock time and date at job start Tue Mar 31 2020 15:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47303 * 2 1 4 4 C 1.50697 * 109.47099 * 120.00290 * 2 1 3 5 5 O 1.21279 * 120.00081 * 340.27858 * 4 2 1 6 6 N 1.34784 * 120.00290 * 160.28591 * 4 2 1 7 7 C 1.46938 * 120.59986 * 355.74420 * 6 4 2 8 8 C 1.53195 * 108.77073 * 233.58042 * 7 6 4 9 9 C 1.53043 * 109.33841 * 305.41747 * 8 7 6 10 10 C 1.52997 * 109.46253 * 181.37084 * 9 8 7 11 11 N 1.46498 * 109.45657 * 301.34152 * 9 8 7 12 12 C 1.34783 * 120.00169 * 180.02562 * 11 9 8 13 13 O 1.21283 * 119.99351 * 359.97438 * 12 11 9 14 14 C 1.50697 * 120.00244 * 180.02562 * 12 11 9 15 15 S 1.81006 * 109.46973 * 179.97438 * 14 12 11 16 16 C 1.76199 * 99.99679 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00391 * 0.02562 * 16 15 14 18 18 C 1.38804 * 119.99906 * 180.02562 * 16 15 14 19 19 N 1.31626 * 119.99562 * 359.97438 * 18 16 15 20 20 Si 1.86792 * 120.00136 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47222 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47374 * 119.99707 * 20 18 16 23 23 H 1.48497 * 109.47111 * 240.00036 * 20 18 16 24 24 C 1.53036 * 109.53901 * 61.34546 * 9 8 7 25 25 C 1.46919 * 120.63428 * 175.77110 * 6 4 2 26 26 H 1.09000 * 109.46934 * 299.99808 * 1 2 3 27 27 H 1.08999 * 109.47284 * 59.99773 * 1 2 3 28 28 H 1.09002 * 109.47161 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47582 * 240.00116 * 2 1 3 30 30 H 1.09003 * 109.47281 * 302.70163 * 3 2 1 31 31 H 1.08999 * 109.46957 * 62.70482 * 3 2 1 32 32 H 1.09000 * 109.47175 * 182.70495 * 3 2 1 33 33 H 1.08990 * 109.56207 * 113.81013 * 7 6 4 34 34 H 1.09002 * 109.61830 * 353.38039 * 7 6 4 35 35 H 1.08997 * 109.49956 * 185.44740 * 8 7 6 36 36 H 1.09003 * 109.50133 * 65.37973 * 8 7 6 37 37 H 1.09004 * 109.46837 * 59.99310 * 10 9 8 38 38 H 1.08996 * 109.47082 * 180.02562 * 10 9 8 39 39 H 1.09008 * 109.46715 * 299.99820 * 10 9 8 40 40 H 0.97004 * 120.00376 * 359.97438 * 11 9 8 41 41 H 1.08997 * 109.47131 * 299.99643 * 14 12 11 42 42 H 1.08997 * 109.47068 * 60.00106 * 14 12 11 43 43 H 0.97008 * 119.99631 * 179.97438 * 19 18 16 44 44 H 1.09004 * 109.49915 * 58.59164 * 24 9 8 45 45 H 1.09007 * 109.49876 * 178.64928 * 24 9 8 46 46 H 1.09002 * 109.58782 * 6.59812 * 25 6 4 47 47 H 1.09000 * 109.70405 * 246.24369 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 1.3023 -0.8542 2.1881 6 7 3.2929 -1.1860 1.2666 7 6 4.1583 -1.1021 0.0821 8 6 4.7008 -2.4999 -0.2321 9 6 5.3892 -3.0676 1.0112 10 6 5.9620 -4.4496 0.6905 11 7 6.4745 -2.1724 1.4198 12 6 7.2254 -2.4720 2.4982 13 8 7.0023 -3.4826 3.1305 14 6 8.3414 -1.5508 2.9188 15 16 9.1560 -2.2221 4.3893 16 6 10.3810 -0.9834 4.6527 17 1 10.4435 -0.1354 3.9868 18 6 11.2658 -1.0974 5.7160 19 7 11.1894 -2.1306 6.5279 20 14 12.5641 0.2162 5.9957 21 1 12.4398 1.2652 4.9520 22 1 12.3710 0.8256 7.3361 23 1 13.9140 -0.3982 5.9210 24 6 4.3728 -3.1884 2.1489 25 6 3.8271 -1.7984 2.4906 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6377 1.9702 -0.8648 31 1 1.7168 1.9421 0.9132 32 1 3.1289 1.4429 -0.0485 33 1 4.9882 -0.4249 0.2837 34 1 3.5820 -0.7345 -0.7669 35 1 5.4198 -2.4360 -1.0489 36 1 3.8777 -3.1529 -0.5223 37 1 6.6869 -4.3635 -0.1190 38 1 6.4519 -4.8543 1.5761 39 1 5.1546 -5.1157 0.3860 40 1 6.6531 -1.3643 0.9138 41 1 9.0660 -1.4646 2.1091 42 1 7.9332 -0.5664 3.1475 43 1 11.8080 -2.2105 7.2708 44 1 3.5523 -3.8347 1.8367 45 1 4.8581 -3.6152 3.0267 46 1 3.0320 -1.8897 3.2306 47 1 4.6298 -1.1792 2.8912 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072878290.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:01 Heat of formation + Delta-G solvation = -106.982646 kcal Electronic energy + Delta-G solvation = -26738.812706 eV Core-core repulsion = 23046.357249 eV Total energy + Delta-G solvation = -3692.455457 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.92683 -40.69252 -38.56225 -35.81640 -35.36984 -34.58387 -33.25557 -32.16214 -30.19542 -29.35490 -28.01272 -27.65287 -25.41356 -24.54483 -23.19669 -22.28899 -20.64974 -19.87157 -19.57804 -18.50792 -17.81386 -16.97160 -16.88674 -16.86225 -16.43408 -16.34726 -15.81203 -15.25243 -15.05336 -14.92479 -14.83696 -14.70655 -14.53344 -14.35994 -13.78141 -13.66164 -13.46389 -13.17194 -13.14901 -13.04184 -12.93594 -12.90348 -12.76248 -12.68737 -12.57187 -12.23925 -12.10149 -11.98522 -11.81848 -11.69068 -11.58512 -11.15980 -10.73856 -10.51147 -10.24766 -10.10832 -9.64450 -8.64677 -8.34959 -6.11730 1.28206 1.40599 1.47920 1.58354 1.60331 1.70220 1.95867 2.26137 2.33653 2.99413 3.33043 3.45186 3.57687 3.77969 3.84821 3.96415 3.99683 4.04807 4.09951 4.22985 4.28804 4.33638 4.43147 4.52740 4.58617 4.67429 4.75343 4.76945 4.78772 4.82047 4.88863 4.91823 4.93880 5.02235 5.05250 5.11835 5.14094 5.32750 5.33435 5.38762 5.41983 5.51825 5.65059 6.19790 6.40918 6.62072 7.06849 7.15734 7.35485 8.74295 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017950 B = 0.002742 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.492049 B =10208.662884 C =10923.669132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.108 4.108 3 C -0.141 4.141 4 C 0.508 3.492 5 O -0.595 6.595 6 N -0.605 5.605 7 C 0.096 3.904 8 C -0.127 4.127 9 C 0.180 3.820 10 C -0.160 4.160 11 N -0.705 5.705 12 C 0.537 3.463 13 O -0.551 6.551 14 C -0.131 4.131 15 S -0.150 6.150 16 C -0.544 4.544 17 H 0.082 0.918 18 C 0.012 3.988 19 N -0.912 5.912 20 Si 0.998 3.002 21 H -0.256 1.256 22 H -0.276 1.276 23 H -0.274 1.274 24 C -0.138 4.138 25 C 0.121 3.879 26 H 0.041 0.959 27 H 0.090 0.910 28 H 0.048 0.952 29 H 0.128 0.872 30 H 0.093 0.907 31 H 0.039 0.961 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.126 0.874 35 H 0.116 0.884 36 H 0.095 0.905 37 H 0.069 0.931 38 H 0.042 0.958 39 H 0.077 0.923 40 H 0.413 0.587 41 H 0.108 0.892 42 H 0.103 0.897 43 H 0.270 0.730 44 H 0.077 0.923 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.079 5.950 -23.817 29.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.129 4.129 3 C -0.198 4.198 4 C 0.298 3.702 5 O -0.475 6.475 6 N -0.337 5.337 7 C -0.026 4.026 8 C -0.165 4.165 9 C 0.095 3.905 10 C -0.218 4.218 11 N -0.360 5.360 12 C 0.323 3.677 13 O -0.428 6.428 14 C -0.282 4.282 15 S 0.077 5.923 16 C -0.692 4.692 17 H 0.100 0.900 18 C -0.193 4.193 19 N -0.548 5.548 20 Si 0.819 3.181 21 H -0.179 1.179 22 H -0.201 1.201 23 H -0.199 1.199 24 C -0.177 4.177 25 C -0.002 4.002 26 H 0.060 0.940 27 H 0.109 0.891 28 H 0.067 0.933 29 H 0.145 0.855 30 H 0.112 0.888 31 H 0.058 0.942 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.144 0.856 35 H 0.134 0.866 36 H 0.113 0.887 37 H 0.088 0.912 38 H 0.061 0.939 39 H 0.096 0.904 40 H 0.251 0.749 41 H 0.126 0.874 42 H 0.121 0.879 43 H 0.079 0.921 44 H 0.095 0.905 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.775 4.117 -22.151 28.698 hybrid contribution 1.250 1.635 0.393 2.096 sum -16.525 5.752 -21.758 27.921 Atomic orbital electron populations 1.21656 0.92919 1.02055 1.02593 1.21417 0.97939 0.98037 0.95471 1.21785 1.02147 0.92788 1.03084 1.21573 0.80697 0.77775 0.90126 1.90671 1.56893 1.59860 1.40108 1.48236 1.13040 1.58835 1.13595 1.22198 0.95048 0.97672 0.87661 1.22242 1.01699 0.96709 0.95860 1.20344 0.85516 0.90394 0.94292 1.22161 1.01820 0.95993 1.01856 1.45909 1.33357 1.27383 1.29371 1.19912 0.82057 0.85411 0.80365 1.90656 1.69736 1.27893 1.54564 1.23390 0.99599 1.02421 1.02790 1.85567 1.39404 1.34956 1.32336 1.23230 1.18810 1.10075 1.17058 0.90028 1.26120 0.99874 0.98785 0.94491 1.70192 1.37891 1.30530 1.16213 0.84922 0.77033 0.77625 0.78478 1.17948 1.20126 1.19927 1.22219 0.98590 0.96556 1.00324 1.21271 0.97681 0.93831 0.87446 0.93966 0.89144 0.93319 0.85453 0.88789 0.94156 0.90913 0.89877 0.85629 0.86579 0.88664 0.91196 0.93883 0.90424 0.74902 0.87399 0.87891 0.92074 0.90484 0.91771 0.91849 0.92521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.78 8.66 71.98 0.62 -1.16 16 2 C -0.11 -1.26 2.41 -11.54 -0.03 -1.28 16 3 C -0.14 -1.28 9.05 71.98 0.65 -0.63 16 4 C 0.51 10.82 6.85 87.66 0.60 11.42 16 5 O -0.59 -18.98 15.45 -3.03 -0.05 -19.03 16 6 N -0.60 -11.04 2.97 -818.90 -2.43 -13.47 16 7 C 0.10 0.83 5.44 86.36 0.47 1.30 16 8 C -0.13 -1.14 4.96 30.67 0.15 -0.99 16 9 C 0.18 3.40 0.66 3.63 0.00 3.40 16 10 C -0.16 -3.39 8.40 71.98 0.60 -2.78 16 11 N -0.71 -15.14 4.10 -422.80 -1.73 -16.87 16 12 C 0.54 18.17 7.27 87.66 0.64 18.81 16 13 O -0.55 -23.55 12.08 -3.04 -0.04 -23.58 16 14 C -0.13 -4.95 6.16 71.24 0.44 -4.51 16 15 S -0.15 -8.18 20.57 -56.49 -1.16 -9.35 16 16 C -0.54 -30.80 9.50 67.96 0.65 -30.15 16 17 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 18 C 0.01 0.68 5.49 84.86 0.47 1.14 16 19 N -0.91 -56.05 13.22 21.65 0.29 -55.76 16 20 Si 1.00 43.52 29.55 68.60 2.03 45.55 16 21 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 22 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 23 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 24 C -0.14 -3.40 4.67 30.67 0.14 -3.26 16 25 C 0.12 3.07 6.18 86.36 0.53 3.60 16 26 H 0.04 0.76 7.90 -2.39 -0.02 0.74 16 27 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.13 0.61 6.36 -2.38 -0.02 0.60 16 30 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.07 0.51 7.43 -2.39 -0.02 0.49 16 33 H 0.08 0.58 6.94 -2.39 -0.02 0.56 16 34 H 0.13 0.28 5.30 -2.39 -0.01 0.27 16 35 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 38 H 0.04 1.31 6.17 -2.39 -0.01 1.29 16 39 H 0.08 1.33 8.14 -2.38 -0.02 1.32 16 40 H 0.41 5.93 7.27 -92.71 -0.67 5.26 16 41 H 0.11 3.65 8.14 -2.40 -0.02 3.63 16 42 H 0.10 3.57 8.14 -2.40 -0.02 3.55 16 43 H 0.27 15.41 8.31 -92.70 -0.77 14.64 16 44 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.06 2.12 6.20 -2.38 -0.01 2.10 16 46 H 0.06 1.95 7.00 -2.39 -0.02 1.93 16 47 H 0.06 1.56 7.74 -2.39 -0.02 1.55 16 Total: -1.00 -83.65 378.94 3.13 -80.52 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 0.29 Total: 17.08 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: 5.94 Total: -5.08 kcal Atomic # 7 Polarization: -82.22 SS G_CDS: -3.88 Total: -86.11 kcal Atomic # 8 Polarization: -42.53 SS G_CDS: -0.08 Total: -42.61 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: -8.18 SS G_CDS: -1.16 Total: -9.35 kcal Total: -83.65 3.13 -80.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072878290.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.465 kcal (2) G-P(sol) polarization free energy of solvation -83.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds