Wall clock time and date at job start Tue Mar 31 2020 15:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46925 * 2 1 4 4 C 1.50706 * 109.46830 * 179.97438 * 3 2 1 5 5 O 1.21284 * 119.99588 * 0.02562 * 4 3 2 6 6 N 1.34771 * 119.99767 * 179.97438 * 4 3 2 7 7 C 1.46506 * 119.99635 * 180.02562 * 6 4 3 8 8 H 1.09000 * 109.46085 * 325.03065 * 7 6 4 9 9 C 1.53042 * 109.45685 * 85.00523 * 7 6 4 10 10 C 1.53192 * 109.31534 * 58.65258 * 9 7 6 11 11 N 1.46925 * 108.77417 * 54.63378 * 10 9 7 12 12 C 1.34778 * 120.63346 * 126.41010 * 11 10 9 13 13 O 1.21281 * 120.00391 * 179.97438 * 12 11 10 14 14 C 1.50705 * 119.99736 * 0.02562 * 12 11 10 15 15 S 1.80995 * 109.47067 * 179.97438 * 14 12 11 16 16 C 1.76200 * 99.99952 * 180.02562 * 15 14 12 17 17 H 1.08005 * 119.99671 * 359.97438 * 16 15 14 18 18 C 1.38792 * 120.00168 * 180.02562 * 16 15 14 19 19 N 1.31630 * 120.00080 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 120.00115 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47143 * 90.00060 * 20 18 16 22 22 H 1.48495 * 109.47276 * 210.00057 * 20 18 16 23 23 H 1.48497 * 109.46800 * 330.00103 * 20 18 16 24 24 C 1.46928 * 118.73990 * 306.39385 * 11 10 9 25 25 C 1.53040 * 109.45674 * 205.06976 * 7 6 4 26 26 H 1.09004 * 109.49389 * 181.39413 * 25 7 6 27 27 C 1.52996 * 109.49760 * 61.29898 * 25 7 6 28 28 H 1.08991 * 109.47008 * 59.99299 * 1 2 3 29 29 H 1.08993 * 109.46916 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46645 * 299.99887 * 1 2 3 31 31 H 1.08999 * 109.46714 * 240.00620 * 2 1 3 32 32 H 1.08999 * 109.46872 * 120.00377 * 2 1 3 33 33 H 1.08999 * 109.46918 * 60.00745 * 3 2 1 34 34 H 1.08994 * 109.47233 * 299.99763 * 3 2 1 35 35 H 0.97000 * 120.00547 * 0.02562 * 6 4 3 36 36 H 1.09006 * 109.49579 * 178.60485 * 9 7 6 37 37 H 1.09000 * 109.49469 * 298.66578 * 9 7 6 38 38 H 1.08998 * 109.58701 * 174.41749 * 10 9 7 39 39 H 1.08999 * 109.58660 * 294.85042 * 10 9 7 40 40 H 1.09004 * 109.46786 * 299.99536 * 14 12 11 41 41 H 1.08996 * 109.46906 * 59.99282 * 14 12 11 42 42 H 0.97005 * 119.99736 * 179.97438 * 19 18 16 43 43 H 1.09002 * 109.58630 * 173.40041 * 24 11 10 44 44 H 1.09001 * 109.58659 * 293.67352 * 24 11 10 45 45 H 1.09002 * 109.47110 * 59.99897 * 27 25 7 46 46 H 1.09006 * 109.47206 * 179.97438 * 27 25 7 47 47 H 1.08993 * 109.47575 * 299.99940 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5471 1.4425 0.0006 5 8 4.1534 0.3921 0.0006 6 7 4.2209 2.6097 0.0002 7 6 5.6860 2.6096 0.0003 8 1 6.0491 1.7677 0.5896 9 6 6.1958 2.4835 -1.4372 10 6 5.6555 3.6497 -2.2707 11 7 6.0185 4.9110 -1.6102 12 6 6.6717 5.8769 -2.2861 13 8 6.9653 6.9138 -1.7298 14 6 7.0362 5.6690 -3.7335 15 16 7.8981 7.1341 -4.3551 16 6 8.1961 6.6316 -6.0174 17 1 7.8634 5.6615 -6.3561 18 6 8.8593 7.4818 -6.8912 19 7 9.0824 7.1062 -8.1329 20 14 9.4354 9.1594 -6.3052 21 1 10.8128 9.0477 -5.7616 22 1 9.4288 10.1111 -7.4451 23 1 8.5226 9.6529 -5.2430 24 6 5.6556 5.0994 -0.1990 25 6 6.1958 3.9169 0.6112 26 1 7.2855 3.9282 0.5890 27 6 5.7128 4.0266 2.0588 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5139 0.8900 33 1 1.6768 1.9563 0.8901 34 1 1.6767 1.9564 -0.8899 35 1 3.7360 3.4498 -0.0001 36 1 7.2856 2.5083 -1.4402 37 1 5.8522 1.5410 -1.8636 38 1 6.0942 3.6202 -3.2680 39 1 4.5706 3.5747 -2.3440 40 1 7.6868 4.7990 -3.8230 41 1 6.1298 5.5063 -4.3167 42 1 9.5456 7.7006 -8.7437 43 1 6.0941 6.0264 0.1704 44 1 4.5707 5.1452 -0.1037 45 1 6.0951 3.1834 2.6342 46 1 6.0765 4.9576 2.4937 47 1 4.6231 4.0166 2.0800 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073636051.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:53 Heat of formation + Delta-G solvation = -92.738437 kcal Electronic energy + Delta-G solvation = -26193.648398 eV Core-core repulsion = 22501.810616 eV Total energy + Delta-G solvation = -3691.837782 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.90662 -39.53796 -37.75963 -34.78216 -34.55435 -33.27220 -32.45684 -31.41987 -29.74225 -28.35141 -26.60558 -25.67107 -25.13115 -22.96251 -22.23821 -20.77753 -20.29218 -19.01120 -17.79376 -17.50813 -16.80619 -16.34223 -16.14901 -15.85077 -15.27326 -15.02134 -14.96340 -14.40880 -14.35471 -14.03032 -13.86688 -13.78778 -13.45427 -13.30664 -13.07010 -12.82076 -12.45454 -12.42421 -12.21119 -12.11331 -12.08532 -11.74132 -11.55798 -11.30674 -11.30410 -11.22352 -11.11784 -11.02589 -10.79719 -10.60243 -10.07431 -9.87783 -9.53382 -9.36068 -9.02248 -8.65129 -8.51591 -6.94426 -6.30583 -4.02686 2.37396 2.65488 2.84915 2.88969 3.14975 3.31656 3.48613 3.56084 4.20933 4.31183 4.39503 4.46524 4.49733 4.54569 4.62019 4.63453 4.79631 4.92981 4.96700 5.03636 5.08440 5.10140 5.15483 5.18685 5.23094 5.27046 5.35641 5.42487 5.47695 5.59925 5.64741 5.67531 5.72268 5.74035 5.77664 5.80236 5.85814 5.89651 5.94675 5.96220 6.22679 6.48274 7.18035 7.38853 7.92378 7.94643 8.37533 8.39817 9.15516 10.78593 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019605 B = 0.002535 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.860399 B =11041.193526 C =11838.497152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.109 4.109 3 C -0.143 4.143 4 C 0.513 3.487 5 O -0.540 6.540 6 N -0.725 5.725 7 C 0.152 3.848 8 H 0.091 0.909 9 C -0.147 4.147 10 C 0.109 3.891 11 N -0.619 5.619 12 C 0.535 3.465 13 O -0.518 6.518 14 C -0.122 4.122 15 S -0.143 6.143 16 C -0.521 4.521 17 H 0.088 0.912 18 C 0.095 3.905 19 N -0.880 5.880 20 Si 0.857 3.143 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 C 0.117 3.883 25 C -0.115 4.115 26 H 0.092 0.908 27 C -0.143 4.143 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.399 0.601 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.066 0.934 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.271 0.729 43 H 0.098 0.902 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.062 0.938 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.152 -11.915 19.888 27.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.183 4.183 4 C 0.299 3.701 5 O -0.417 6.417 6 N -0.378 5.378 7 C 0.047 3.953 8 H 0.109 0.891 9 C -0.187 4.187 10 C -0.014 4.014 11 N -0.355 5.355 12 C 0.323 3.677 13 O -0.393 6.393 14 C -0.272 4.272 15 S 0.084 5.916 16 C -0.669 4.669 17 H 0.106 0.894 18 C -0.113 4.113 19 N -0.516 5.516 20 Si 0.682 3.318 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.159 1.159 24 C -0.006 4.006 25 C -0.134 4.134 26 H 0.110 0.890 27 C -0.201 4.201 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.234 0.766 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.110 0.890 39 H 0.085 0.915 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.081 0.919 43 H 0.116 0.884 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.081 0.919 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.194 -11.082 20.514 27.297 hybrid contribution -0.217 -0.162 -0.796 0.841 sum -14.411 -11.244 19.719 26.888 Atomic orbital electron populations 1.21799 0.95483 1.02013 1.01808 1.21272 0.95259 0.94606 1.03555 1.21744 0.91792 1.00320 1.04401 1.20773 0.90314 0.83572 0.75407 1.90710 1.70522 1.31273 1.49186 1.46196 1.07202 1.08729 1.75642 1.20944 0.79627 0.98306 0.96406 0.89072 1.22324 1.01923 0.98931 0.95482 1.21697 1.00088 0.82545 0.97057 1.48085 1.59072 1.17010 1.11286 1.20311 0.76318 0.82768 0.88315 1.90689 1.52591 1.26423 1.69590 1.23312 1.04534 1.05124 0.94247 1.84786 1.73982 1.19965 1.12897 1.22300 1.43975 1.06960 0.93621 0.89400 1.24715 0.94187 0.98399 0.94022 1.69940 1.40128 1.37219 1.04345 0.86733 0.81189 0.83872 0.80041 1.19205 1.19936 1.15944 1.21541 0.99031 0.99259 0.80733 1.21815 1.02103 0.94132 0.95384 0.89004 1.21744 1.01308 1.02383 0.94666 0.92601 0.92392 0.92736 0.91186 0.91325 0.89024 0.88850 0.76561 0.90160 0.89964 0.88976 0.91526 0.88531 0.88545 0.91927 0.88401 0.92164 0.92170 0.91939 0.92502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.91 37.16 0.37 -0.41 16 2 C -0.11 -0.73 5.22 -26.73 -0.14 -0.87 16 3 C -0.14 -0.82 5.70 -27.88 -0.16 -0.98 16 4 C 0.51 4.40 7.79 -10.98 -0.09 4.32 16 5 O -0.54 -6.79 15.64 5.55 0.09 -6.71 16 6 N -0.72 -5.14 3.60 -53.76 -0.19 -5.34 16 7 C 0.15 1.28 2.21 -67.88 -0.15 1.13 16 8 H 0.09 0.88 7.58 -51.93 -0.39 0.49 16 9 C -0.15 -1.38 5.77 -26.61 -0.15 -1.54 16 10 C 0.11 1.12 6.08 -3.71 -0.02 1.10 16 11 N -0.62 -7.71 2.97 -172.77 -0.51 -8.22 16 12 C 0.53 9.30 7.72 -10.98 -0.08 9.21 16 13 O -0.52 -10.84 15.27 5.56 0.08 -10.76 16 14 C -0.12 -2.32 4.50 36.01 0.16 -2.16 16 15 S -0.14 -3.58 18.55 -107.50 -1.99 -5.58 16 16 C -0.52 -14.89 10.04 30.94 0.31 -14.58 16 17 H 0.09 2.62 8.03 -52.48 -0.42 2.20 16 18 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 19 N -0.88 -26.43 13.97 55.49 0.78 -25.66 16 20 Si 0.86 21.67 27.74 -169.99 -4.72 16.96 16 21 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 23 H -0.24 -5.94 6.74 56.52 0.38 -5.56 16 24 C 0.12 1.17 5.41 -3.71 -0.02 1.15 16 25 C -0.11 -0.93 2.67 -90.50 -0.24 -1.17 16 26 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 27 C -0.14 -0.93 9.05 37.16 0.34 -0.60 16 28 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 32 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 33 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.40 2.17 6.73 -40.82 -0.27 1.89 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.09 1.01 5.93 -51.93 -0.31 0.70 16 39 H 0.07 0.60 7.74 -51.93 -0.40 0.19 16 40 H 0.10 1.73 7.69 -51.91 -0.40 1.33 16 41 H 0.10 1.72 7.94 -51.92 -0.41 1.31 16 42 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 43 H 0.10 1.17 7.01 -51.93 -0.36 0.81 16 44 H 0.06 0.47 6.65 -51.93 -0.35 0.13 16 45 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.06 0.32 7.54 -51.93 -0.39 -0.07 16 LS Contribution 385.06 15.07 5.80 5.80 Total: -1.00 -34.70 385.06 -8.58 -43.28 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -7.94 Total: -1.05 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: 0.02 Total: -2.73 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.07 Total: -39.22 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: 0.17 Total: -17.46 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.72 Total: 16.96 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -1.99 Total: -5.58 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.70 -8.58 -43.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073636051.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.461 kcal (2) G-P(sol) polarization free energy of solvation -34.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds