Wall clock time and date at job start Tue Mar 31 2020 15:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46925 * 2 1 4 4 C 1.50706 * 109.46830 * 179.97438 * 3 2 1 5 5 O 1.21284 * 119.99588 * 0.02562 * 4 3 2 6 6 N 1.34771 * 119.99767 * 179.97438 * 4 3 2 7 7 C 1.46506 * 119.99635 * 180.02562 * 6 4 3 8 8 H 1.09000 * 109.46085 * 325.03065 * 7 6 4 9 9 C 1.53042 * 109.45685 * 85.00523 * 7 6 4 10 10 C 1.53192 * 109.31534 * 58.65258 * 9 7 6 11 11 N 1.46925 * 108.77417 * 54.63378 * 10 9 7 12 12 C 1.34778 * 120.63346 * 126.41010 * 11 10 9 13 13 O 1.21281 * 120.00391 * 179.97438 * 12 11 10 14 14 C 1.50705 * 119.99736 * 0.02562 * 12 11 10 15 15 S 1.80995 * 109.47067 * 179.97438 * 14 12 11 16 16 C 1.76200 * 99.99952 * 180.02562 * 15 14 12 17 17 H 1.08005 * 119.99671 * 359.97438 * 16 15 14 18 18 C 1.38792 * 120.00168 * 180.02562 * 16 15 14 19 19 N 1.31630 * 120.00080 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 120.00115 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47143 * 90.00060 * 20 18 16 22 22 H 1.48495 * 109.47276 * 210.00057 * 20 18 16 23 23 H 1.48497 * 109.46800 * 330.00103 * 20 18 16 24 24 C 1.46928 * 118.73990 * 306.39385 * 11 10 9 25 25 C 1.53040 * 109.45674 * 205.06976 * 7 6 4 26 26 H 1.09004 * 109.49389 * 181.39413 * 25 7 6 27 27 C 1.52996 * 109.49760 * 61.29898 * 25 7 6 28 28 H 1.08991 * 109.47008 * 59.99299 * 1 2 3 29 29 H 1.08993 * 109.46916 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46645 * 299.99887 * 1 2 3 31 31 H 1.08999 * 109.46714 * 240.00620 * 2 1 3 32 32 H 1.08999 * 109.46872 * 120.00377 * 2 1 3 33 33 H 1.08999 * 109.46918 * 60.00745 * 3 2 1 34 34 H 1.08994 * 109.47233 * 299.99763 * 3 2 1 35 35 H 0.97000 * 120.00547 * 0.02562 * 6 4 3 36 36 H 1.09006 * 109.49579 * 178.60485 * 9 7 6 37 37 H 1.09000 * 109.49469 * 298.66578 * 9 7 6 38 38 H 1.08998 * 109.58701 * 174.41749 * 10 9 7 39 39 H 1.08999 * 109.58660 * 294.85042 * 10 9 7 40 40 H 1.09004 * 109.46786 * 299.99536 * 14 12 11 41 41 H 1.08996 * 109.46906 * 59.99282 * 14 12 11 42 42 H 0.97005 * 119.99736 * 179.97438 * 19 18 16 43 43 H 1.09002 * 109.58630 * 173.40041 * 24 11 10 44 44 H 1.09001 * 109.58659 * 293.67352 * 24 11 10 45 45 H 1.09002 * 109.47110 * 59.99897 * 27 25 7 46 46 H 1.09006 * 109.47206 * 179.97438 * 27 25 7 47 47 H 1.08993 * 109.47575 * 299.99940 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5471 1.4425 0.0006 5 8 4.1534 0.3921 0.0006 6 7 4.2209 2.6097 0.0002 7 6 5.6860 2.6096 0.0003 8 1 6.0491 1.7677 0.5896 9 6 6.1958 2.4835 -1.4372 10 6 5.6555 3.6497 -2.2707 11 7 6.0185 4.9110 -1.6102 12 6 6.6717 5.8769 -2.2861 13 8 6.9653 6.9138 -1.7298 14 6 7.0362 5.6690 -3.7335 15 16 7.8981 7.1341 -4.3551 16 6 8.1961 6.6316 -6.0174 17 1 7.8634 5.6615 -6.3561 18 6 8.8593 7.4818 -6.8912 19 7 9.0824 7.1062 -8.1329 20 14 9.4354 9.1594 -6.3052 21 1 10.8128 9.0477 -5.7616 22 1 9.4288 10.1111 -7.4451 23 1 8.5226 9.6529 -5.2430 24 6 5.6556 5.0994 -0.1990 25 6 6.1958 3.9169 0.6112 26 1 7.2855 3.9282 0.5890 27 6 5.7128 4.0266 2.0588 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5139 0.8900 33 1 1.6768 1.9563 0.8901 34 1 1.6767 1.9564 -0.8899 35 1 3.7360 3.4498 -0.0001 36 1 7.2856 2.5083 -1.4402 37 1 5.8522 1.5410 -1.8636 38 1 6.0942 3.6202 -3.2680 39 1 4.5706 3.5747 -2.3440 40 1 7.6868 4.7990 -3.8230 41 1 6.1298 5.5063 -4.3167 42 1 9.5456 7.7006 -8.7437 43 1 6.0941 6.0264 0.1704 44 1 4.5707 5.1452 -0.1037 45 1 6.0951 3.1834 2.6342 46 1 6.0765 4.9576 2.4937 47 1 4.6231 4.0166 2.0800 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073636051.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:52 Heat of formation + Delta-G solvation = -115.145150 kcal Electronic energy + Delta-G solvation = -26194.620026 eV Core-core repulsion = 22501.810616 eV Total energy + Delta-G solvation = -3692.809410 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.78245 -40.54186 -38.77786 -35.66180 -35.20683 -34.67884 -34.00878 -32.26140 -31.12640 -28.86713 -27.91628 -27.31245 -26.12062 -23.70820 -22.85455 -21.45551 -21.28211 -20.14114 -19.48336 -18.43047 -17.95947 -17.20946 -17.09780 -16.94676 -16.84342 -16.31744 -15.78301 -15.67753 -15.21585 -15.07027 -14.93395 -14.89861 -14.56969 -14.43198 -13.92938 -13.86433 -13.61231 -13.36363 -13.13199 -13.01423 -12.91493 -12.82250 -12.74068 -12.61009 -12.50198 -12.07765 -12.00975 -11.97854 -11.87049 -11.60339 -11.56113 -11.17873 -10.94254 -10.79308 -10.53575 -10.08835 -9.70266 -9.00881 -8.52134 -6.23256 0.96664 1.31076 1.45140 1.49455 1.53621 1.72235 2.02282 2.24234 2.25127 2.66777 2.86079 3.41543 3.63159 3.71812 3.81542 3.86613 3.96891 4.05976 4.15530 4.16749 4.18094 4.28617 4.37796 4.43121 4.57900 4.61815 4.68822 4.74558 4.76575 4.81659 4.82329 4.89051 4.94862 5.04113 5.07889 5.13679 5.26713 5.30343 5.31031 5.47285 5.51149 5.55771 5.69976 6.10601 6.18852 6.59638 6.92894 7.05698 7.32442 8.60230 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019605 B = 0.002535 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.860399 B =11041.193526 C =11838.497152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.110 4.110 3 C -0.136 4.136 4 C 0.511 3.489 5 O -0.585 6.585 6 N -0.712 5.712 7 C 0.158 3.842 8 H 0.081 0.919 9 C -0.142 4.142 10 C 0.107 3.893 11 N -0.603 5.603 12 C 0.537 3.463 13 O -0.559 6.559 14 C -0.108 4.108 15 S -0.173 6.173 16 C -0.528 4.528 17 H 0.061 0.939 18 C 0.045 3.955 19 N -0.917 5.917 20 Si 0.915 3.085 21 H -0.263 1.263 22 H -0.259 1.259 23 H -0.236 1.236 24 C 0.114 3.886 25 C -0.103 4.103 26 H 0.079 0.921 27 C -0.138 4.138 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.117 0.883 34 H 0.113 0.887 35 H 0.411 0.589 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.107 0.893 41 H 0.111 0.889 42 H 0.277 0.723 43 H 0.080 0.920 44 H 0.092 0.908 45 H 0.060 0.940 46 H 0.064 0.936 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.984 -11.550 21.621 29.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.148 4.148 3 C -0.176 4.176 4 C 0.299 3.701 5 O -0.465 6.465 6 N -0.366 5.366 7 C 0.053 3.947 8 H 0.099 0.901 9 C -0.181 4.181 10 C -0.015 4.015 11 N -0.336 5.336 12 C 0.324 3.676 13 O -0.437 6.437 14 C -0.259 4.259 15 S 0.053 5.947 16 C -0.676 4.676 17 H 0.079 0.921 18 C -0.161 4.161 19 N -0.555 5.555 20 Si 0.737 3.263 21 H -0.188 1.188 22 H -0.183 1.183 23 H -0.160 1.160 24 C -0.008 4.008 25 C -0.123 4.123 26 H 0.098 0.902 27 C -0.196 4.196 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.135 0.865 34 H 0.131 0.869 35 H 0.249 0.751 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.104 0.896 39 H 0.108 0.892 40 H 0.125 0.875 41 H 0.129 0.871 42 H 0.086 0.914 43 H 0.099 0.901 44 H 0.110 0.890 45 H 0.080 0.920 46 H 0.083 0.917 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.065 -10.736 22.262 29.478 hybrid contribution 0.277 -0.462 -1.276 1.385 sum -15.788 -11.198 20.986 28.549 Atomic orbital electron populations 1.21766 0.94046 1.02209 1.02656 1.21242 0.96444 0.95162 1.01922 1.21777 0.89366 0.99949 1.06496 1.21306 0.91477 0.83014 0.74254 1.90702 1.71585 1.32908 1.51280 1.46072 1.06536 1.09064 1.74899 1.20781 0.80492 0.97988 0.95458 0.90098 1.22255 1.01589 0.98257 0.96024 1.21877 1.01484 0.81508 0.96660 1.48037 1.57003 1.16393 1.12201 1.19936 0.76869 0.83223 0.87526 1.90678 1.54748 1.28252 1.70071 1.23293 1.04527 1.02185 0.95900 1.84676 1.75328 1.23955 1.10720 1.22445 1.43569 1.05968 0.95623 0.92055 1.25576 0.94366 1.01948 0.94170 1.70020 1.41153 1.38815 1.05479 0.85860 0.80667 0.79854 0.79944 1.18755 1.18325 1.15958 1.21784 1.00866 0.99200 0.78907 1.21699 1.01374 0.92981 0.96266 0.90241 1.21713 1.02236 1.02579 0.93089 0.91928 0.92644 0.91618 0.93118 0.92809 0.86495 0.86910 0.75124 0.90806 0.90304 0.89634 0.89170 0.87454 0.87119 0.91364 0.90128 0.88996 0.92049 0.91720 0.91002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.91 71.98 0.71 -0.50 16 2 C -0.11 -1.32 5.22 30.60 0.16 -1.16 16 3 C -0.14 -1.16 5.70 29.85 0.17 -0.99 16 4 C 0.51 7.67 7.79 87.66 0.68 8.36 16 5 O -0.58 -14.28 15.64 -3.04 -0.05 -14.32 16 6 N -0.71 -8.03 3.60 -442.39 -1.59 -9.62 16 7 C 0.16 2.35 2.21 45.02 0.10 2.45 16 8 H 0.08 1.46 7.58 -2.39 -0.02 1.45 16 9 C -0.14 -2.46 5.77 30.67 0.18 -2.28 16 10 C 0.11 1.95 6.08 86.36 0.53 2.48 16 11 N -0.60 -13.83 2.97 -818.90 -2.43 -16.26 16 12 C 0.54 18.07 7.72 87.66 0.68 18.74 16 13 O -0.56 -23.08 15.27 -3.03 -0.05 -23.12 16 14 C -0.11 -4.06 4.50 71.24 0.32 -3.74 16 15 S -0.17 -8.70 18.55 -56.49 -1.05 -9.75 16 16 C -0.53 -30.65 10.04 67.95 0.68 -29.96 16 17 H 0.06 3.76 8.03 -2.91 -0.02 3.73 16 18 C 0.04 2.62 5.50 84.86 0.47 3.09 16 19 N -0.92 -55.73 13.97 21.65 0.30 -55.42 16 20 Si 0.91 44.80 27.74 68.60 1.90 46.70 16 21 H -0.26 -12.58 7.11 99.48 0.71 -11.87 16 22 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 23 H -0.24 -11.48 6.74 99.48 0.67 -10.81 16 24 C 0.11 2.00 5.41 86.36 0.47 2.46 16 25 C -0.10 -1.47 2.67 -10.72 -0.03 -1.50 16 26 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 27 C -0.14 -1.44 9.05 71.98 0.65 -0.79 16 28 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.05 0.79 8.10 -2.39 -0.02 0.77 16 32 H 0.05 0.80 8.10 -2.39 -0.02 0.78 16 33 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.41 2.74 6.73 -92.71 -0.62 2.11 16 36 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 37 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.09 1.72 5.93 -2.39 -0.01 1.71 16 39 H 0.09 1.30 7.74 -2.39 -0.02 1.28 16 40 H 0.11 3.79 7.69 -2.39 -0.02 3.77 16 41 H 0.11 3.83 7.94 -2.40 -0.02 3.81 16 42 H 0.28 15.56 8.31 -92.70 -0.77 14.79 16 43 H 0.08 1.80 7.01 -2.39 -0.02 1.78 16 44 H 0.09 1.07 6.65 -2.39 -0.02 1.05 16 45 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 46 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 47 H 0.07 0.55 7.54 -2.39 -0.02 0.53 16 Total: -1.00 -76.81 385.06 3.10 -73.72 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: 0.29 Total: 11.42 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: 5.77 Total: -3.33 kcal Atomic # 7 Polarization: -77.59 SS G_CDS: -3.72 Total: -81.31 kcal Atomic # 8 Polarization: -37.36 SS G_CDS: -0.09 Total: -37.45 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.90 Total: 46.70 kcal Atomic # 16 Polarization: -8.70 SS G_CDS: -1.05 Total: -9.75 kcal Total: -76.81 3.10 -73.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073636051.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.429 kcal (2) G-P(sol) polarization free energy of solvation -76.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds