Wall clock time and date at job start Tue Mar 31 2020 15:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47303 * 2 1 4 4 C 1.50698 * 109.47004 * 179.97438 * 3 2 1 5 5 O 1.21283 * 120.00472 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99538 * 179.97438 * 4 3 2 7 7 C 1.46499 * 119.99665 * 179.72653 * 6 4 3 8 8 H 1.08998 * 109.46166 * 35.24766 * 7 6 4 9 9 C 1.53043 * 109.46215 * 275.27782 * 7 6 4 10 10 C 1.53192 * 109.31379 * 301.34483 * 9 7 6 11 11 N 1.46924 * 108.77617 * 305.36322 * 10 9 7 12 12 C 1.34765 * 120.63447 * 233.62756 * 11 10 9 13 13 O 1.21283 * 120.00292 * 180.02562 * 12 11 10 14 14 C 1.50702 * 119.99942 * 0.02562 * 12 11 10 15 15 S 1.81000 * 109.47515 * 180.02562 * 14 12 11 16 16 C 1.76193 * 100.00370 * 180.02562 * 15 14 12 17 17 H 1.08004 * 120.00008 * 0.02562 * 16 15 14 18 18 C 1.38798 * 120.00229 * 180.02562 * 16 15 14 19 19 N 1.31630 * 119.99795 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00010 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47327 * 59.99803 * 20 18 16 22 22 H 1.48501 * 109.47430 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47511 * 299.99907 * 20 18 16 24 24 C 1.46932 * 118.73746 * 53.60923 * 11 10 9 25 25 C 1.53042 * 109.46071 * 155.21225 * 7 6 4 26 26 H 1.09005 * 109.49761 * 178.60969 * 25 7 6 27 27 C 1.53003 * 109.49334 * 298.70205 * 25 7 6 28 28 H 1.09001 * 109.47077 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47540 * 300.00020 * 1 2 3 30 30 H 1.09001 * 109.46719 * 60.00219 * 1 2 3 31 31 H 1.09000 * 109.47250 * 239.99315 * 2 1 3 32 32 H 1.09007 * 109.46897 * 120.00194 * 2 1 3 33 33 H 1.09003 * 109.46690 * 59.99829 * 3 2 1 34 34 H 1.08993 * 109.46773 * 300.00165 * 3 2 1 35 35 H 0.97001 * 120.00485 * 0.02562 * 6 4 3 36 36 H 1.08998 * 109.49681 * 61.29538 * 9 7 6 37 37 H 1.09001 * 109.50061 * 181.39683 * 9 7 6 38 38 H 1.09003 * 109.58612 * 65.14915 * 10 9 7 39 39 H 1.09002 * 109.58839 * 185.57424 * 10 9 7 40 40 H 1.09000 * 109.47161 * 299.99811 * 14 12 11 41 41 H 1.09003 * 109.46988 * 59.99903 * 14 12 11 42 42 H 0.97001 * 119.99887 * 180.02562 * 19 18 16 43 43 H 1.09000 * 109.58687 * 66.17847 * 24 11 10 44 44 H 1.08997 * 109.59005 * 186.46265 * 24 11 10 45 45 H 1.08997 * 109.47086 * 60.00052 * 27 25 7 46 46 H 1.08998 * 109.46711 * 179.97438 * 27 25 7 47 47 H 1.08993 * 109.47178 * 299.99675 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 8 4.1535 0.3921 0.0006 6 7 4.2209 2.6096 0.0002 7 6 5.6858 2.6096 0.0069 8 1 6.0517 1.7685 -0.5820 9 6 6.1892 2.4811 1.4465 10 6 5.6452 3.6461 2.2793 11 7 6.0112 4.9084 1.6225 12 6 6.6619 5.8729 2.3026 13 8 6.9580 6.9107 1.7492 14 6 7.0216 5.6619 3.7508 15 16 7.8812 7.1258 4.3785 16 6 8.1752 6.6191 6.0402 17 1 7.8420 5.6480 6.3756 18 6 8.8348 7.4679 6.9182 19 7 9.2412 8.6512 6.5093 20 14 9.1457 6.9309 8.6801 21 1 9.9734 5.6979 8.6831 22 1 9.8624 8.0093 9.4072 23 1 7.8492 6.6583 9.3508 24 6 5.6545 5.0991 0.2099 25 6 6.1985 3.9178 -0.5997 26 1 7.2882 3.9290 -0.5724 27 6 5.7221 4.0297 -2.0493 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9562 -0.8899 35 1 3.7359 3.4497 -0.0001 36 1 5.8432 1.5383 1.8701 37 1 7.2789 2.5060 1.4545 38 1 4.5599 3.5710 2.3476 39 1 6.0792 3.6149 3.2787 40 1 6.1133 5.4979 4.3306 41 1 7.6720 4.7918 3.8405 42 1 9.7026 9.2442 7.1229 43 1 4.5701 5.1424 0.1095 44 1 6.0927 6.0278 -0.1554 45 1 4.6325 4.0197 -2.0755 46 1 6.0871 4.9617 -2.4808 47 1 6.1070 3.1875 -2.6243 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073636052.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:58 Heat of formation + Delta-G solvation = -92.948535 kcal Electronic energy + Delta-G solvation = -26154.539044 eV Core-core repulsion = 22462.692151 eV Total energy + Delta-G solvation = -3691.846893 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.85848 -39.46842 -37.68137 -34.75218 -34.50125 -33.22810 -32.44382 -31.37053 -29.60015 -28.33429 -26.55240 -25.56822 -25.01608 -22.92842 -22.20620 -20.75126 -20.21528 -18.93627 -17.77540 -17.48949 -16.69390 -16.31189 -16.11036 -15.78718 -15.19297 -14.96823 -14.81656 -14.37596 -14.31082 -14.01475 -13.91628 -13.73915 -13.43946 -13.18937 -12.99756 -12.67242 -12.42871 -12.32696 -12.18419 -12.03849 -11.99697 -11.67029 -11.54947 -11.25442 -11.20830 -11.11022 -11.05101 -11.04945 -10.79522 -10.72300 -10.05649 -9.82997 -9.41905 -9.32379 -9.07350 -8.56451 -8.25202 -6.52162 -6.22959 -3.93879 2.39128 2.84271 2.92023 3.00463 3.22528 3.24528 3.28072 3.56219 4.18808 4.25551 4.41840 4.50463 4.53168 4.59100 4.63343 4.83371 4.86062 4.99367 5.04345 5.11082 5.12123 5.14426 5.22163 5.24141 5.28870 5.36567 5.46453 5.47859 5.58225 5.64439 5.67096 5.71648 5.77931 5.78432 5.83686 5.85514 5.91539 5.93892 5.96059 6.09127 6.25632 6.57202 7.20599 7.49293 7.57901 7.96585 8.33476 8.50838 9.22234 10.84371 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016929 B = 0.002535 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.537883 B =11040.922026 C =12060.108899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.109 4.109 3 C -0.143 4.143 4 C 0.512 3.488 5 O -0.541 6.541 6 N -0.724 5.724 7 C 0.152 3.848 8 H 0.091 0.909 9 C -0.147 4.147 10 C 0.111 3.889 11 N -0.620 5.620 12 C 0.536 3.464 13 O -0.516 6.516 14 C -0.151 4.151 15 S -0.061 6.061 16 C -0.536 4.536 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C 0.117 3.883 25 C -0.115 4.115 26 H 0.092 0.908 27 C -0.143 4.143 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.399 0.601 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.269 0.731 43 H 0.059 0.941 44 H 0.098 0.902 45 H 0.056 0.944 46 H 0.062 0.938 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.184 -15.143 -15.856 26.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.183 4.183 4 C 0.299 3.701 5 O -0.418 6.418 6 N -0.377 5.377 7 C 0.047 3.953 8 H 0.109 0.891 9 C -0.187 4.187 10 C -0.013 4.013 11 N -0.357 5.357 12 C 0.324 3.676 13 O -0.390 6.390 14 C -0.301 4.301 15 S 0.166 5.834 16 C -0.684 4.684 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.199 1.199 24 C -0.006 4.006 25 C -0.135 4.135 26 H 0.110 0.890 27 C -0.201 4.201 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.235 0.765 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.116 0.884 45 H 0.075 0.925 46 H 0.081 0.919 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.203 -14.165 -16.619 26.050 hybrid contribution -0.378 -1.160 1.851 2.217 sum -14.582 -15.325 -14.769 25.799 Atomic orbital electron populations 1.21799 0.95492 1.01997 1.01813 1.21269 0.95247 0.94625 1.03540 1.21741 0.91821 1.00294 1.04409 1.20767 0.90302 0.83581 0.75420 1.90706 1.70518 1.31292 1.49254 1.46200 1.07236 1.08722 1.75564 1.20941 0.79602 0.98321 0.96394 0.89121 1.22325 1.01923 0.98914 0.95501 1.21661 0.99874 0.82628 0.97103 1.48115 1.59433 1.17024 1.11088 1.20341 0.76171 0.82692 0.88365 1.90692 1.52251 1.26301 1.69792 1.23556 1.04729 1.07475 0.94366 1.85389 1.71859 1.15626 1.10511 1.22812 1.44086 1.05301 0.96201 0.91009 1.24989 0.94800 0.94531 0.99233 1.70006 1.36529 1.07705 1.36023 0.86227 0.78556 0.78332 0.82409 1.19928 1.20799 1.19937 1.21527 0.98969 0.99230 0.80849 1.21818 1.02104 0.94144 0.95385 0.89007 1.21743 1.01303 1.02367 0.94675 0.92407 0.92611 0.92722 0.91323 0.91213 0.88872 0.89004 0.76541 0.90089 0.90188 0.91706 0.89077 0.89321 0.89254 0.92118 0.92299 0.88363 0.92535 0.91915 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.91 37.16 0.37 -0.43 16 2 C -0.11 -0.74 5.22 -26.73 -0.14 -0.88 16 3 C -0.14 -0.84 5.70 -27.88 -0.16 -1.00 16 4 C 0.51 4.51 7.79 -10.99 -0.09 4.43 16 5 O -0.54 -6.90 15.65 5.55 0.09 -6.81 16 6 N -0.72 -5.38 3.60 -53.76 -0.19 -5.57 16 7 C 0.15 1.34 2.21 -67.89 -0.15 1.18 16 8 H 0.09 0.91 7.58 -51.93 -0.39 0.51 16 9 C -0.15 -1.44 5.77 -26.61 -0.15 -1.59 16 10 C 0.11 1.19 6.08 -3.71 -0.02 1.16 16 11 N -0.62 -8.17 2.97 -172.77 -0.51 -8.69 16 12 C 0.54 9.85 7.72 -10.99 -0.08 9.76 16 13 O -0.52 -11.43 15.27 5.55 0.08 -11.35 16 14 C -0.15 -3.01 4.50 36.01 0.16 -2.85 16 15 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 16 C -0.54 -15.15 9.50 30.94 0.29 -14.86 16 17 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 18 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 19 N -0.87 -26.03 13.22 55.49 0.73 -25.30 16 20 Si 0.92 21.32 29.55 -169.99 -5.02 16.29 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 24 C 0.12 1.25 5.42 -3.71 -0.02 1.23 16 25 C -0.11 -0.99 2.67 -90.50 -0.24 -1.23 16 26 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 27 C -0.14 -1.00 9.05 37.16 0.34 -0.66 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 32 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 33 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.40 2.32 6.73 -40.82 -0.27 2.05 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.61 7.74 -51.93 -0.40 0.21 16 39 H 0.09 1.04 5.93 -51.93 -0.31 0.73 16 40 H 0.09 1.65 7.94 -51.91 -0.41 1.23 16 41 H 0.09 1.66 7.69 -51.92 -0.40 1.27 16 42 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 43 H 0.06 0.50 6.64 -51.93 -0.34 0.15 16 44 H 0.10 1.25 7.00 -51.93 -0.36 0.89 16 45 H 0.06 0.34 7.54 -51.93 -0.39 -0.05 16 46 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 387.73 15.07 5.84 5.84 Total: -1.00 -35.00 387.73 -9.09 -44.09 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -7.90 Total: -0.94 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: 0.01 Total: -3.73 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: 0.03 Total: -39.56 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: 0.17 Total: -18.16 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.00 -9.09 -44.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073636052.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.858 kcal (2) G-P(sol) polarization free energy of solvation -35.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds