Wall clock time and date at job start Tue Mar 31 2020 15:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47303 * 2 1 4 4 C 1.50698 * 109.47004 * 179.97438 * 3 2 1 5 5 O 1.21283 * 120.00472 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99538 * 179.97438 * 4 3 2 7 7 C 1.46499 * 119.99665 * 179.72653 * 6 4 3 8 8 H 1.08998 * 109.46166 * 35.24766 * 7 6 4 9 9 C 1.53043 * 109.46215 * 275.27782 * 7 6 4 10 10 C 1.53192 * 109.31379 * 301.34483 * 9 7 6 11 11 N 1.46924 * 108.77617 * 305.36322 * 10 9 7 12 12 C 1.34765 * 120.63447 * 233.62756 * 11 10 9 13 13 O 1.21283 * 120.00292 * 180.02562 * 12 11 10 14 14 C 1.50702 * 119.99942 * 0.02562 * 12 11 10 15 15 S 1.81000 * 109.47515 * 180.02562 * 14 12 11 16 16 C 1.76193 * 100.00370 * 180.02562 * 15 14 12 17 17 H 1.08004 * 120.00008 * 0.02562 * 16 15 14 18 18 C 1.38798 * 120.00229 * 180.02562 * 16 15 14 19 19 N 1.31630 * 119.99795 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00010 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47327 * 59.99803 * 20 18 16 22 22 H 1.48501 * 109.47430 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47511 * 299.99907 * 20 18 16 24 24 C 1.46932 * 118.73746 * 53.60923 * 11 10 9 25 25 C 1.53042 * 109.46071 * 155.21225 * 7 6 4 26 26 H 1.09005 * 109.49761 * 178.60969 * 25 7 6 27 27 C 1.53003 * 109.49334 * 298.70205 * 25 7 6 28 28 H 1.09001 * 109.47077 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47540 * 300.00020 * 1 2 3 30 30 H 1.09001 * 109.46719 * 60.00219 * 1 2 3 31 31 H 1.09000 * 109.47250 * 239.99315 * 2 1 3 32 32 H 1.09007 * 109.46897 * 120.00194 * 2 1 3 33 33 H 1.09003 * 109.46690 * 59.99829 * 3 2 1 34 34 H 1.08993 * 109.46773 * 300.00165 * 3 2 1 35 35 H 0.97001 * 120.00485 * 0.02562 * 6 4 3 36 36 H 1.08998 * 109.49681 * 61.29538 * 9 7 6 37 37 H 1.09001 * 109.50061 * 181.39683 * 9 7 6 38 38 H 1.09003 * 109.58612 * 65.14915 * 10 9 7 39 39 H 1.09002 * 109.58839 * 185.57424 * 10 9 7 40 40 H 1.09000 * 109.47161 * 299.99811 * 14 12 11 41 41 H 1.09003 * 109.46988 * 59.99903 * 14 12 11 42 42 H 0.97001 * 119.99887 * 180.02562 * 19 18 16 43 43 H 1.09000 * 109.58687 * 66.17847 * 24 11 10 44 44 H 1.08997 * 109.59005 * 186.46265 * 24 11 10 45 45 H 1.08997 * 109.47086 * 60.00052 * 27 25 7 46 46 H 1.08998 * 109.46711 * 179.97438 * 27 25 7 47 47 H 1.08993 * 109.47178 * 299.99675 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 8 4.1535 0.3921 0.0006 6 7 4.2209 2.6096 0.0002 7 6 5.6858 2.6096 0.0069 8 1 6.0517 1.7685 -0.5820 9 6 6.1892 2.4811 1.4465 10 6 5.6452 3.6461 2.2793 11 7 6.0112 4.9084 1.6225 12 6 6.6619 5.8729 2.3026 13 8 6.9580 6.9107 1.7492 14 6 7.0216 5.6619 3.7508 15 16 7.8812 7.1258 4.3785 16 6 8.1752 6.6191 6.0402 17 1 7.8420 5.6480 6.3756 18 6 8.8348 7.4679 6.9182 19 7 9.2412 8.6512 6.5093 20 14 9.1457 6.9309 8.6801 21 1 9.9734 5.6979 8.6831 22 1 9.8624 8.0093 9.4072 23 1 7.8492 6.6583 9.3508 24 6 5.6545 5.0991 0.2099 25 6 6.1985 3.9178 -0.5997 26 1 7.2882 3.9290 -0.5724 27 6 5.7221 4.0297 -2.0493 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9562 -0.8899 35 1 3.7359 3.4497 -0.0001 36 1 5.8432 1.5383 1.8701 37 1 7.2789 2.5060 1.4545 38 1 4.5599 3.5710 2.3476 39 1 6.0792 3.6149 3.2787 40 1 6.1133 5.4979 4.3306 41 1 7.6720 4.7918 3.8405 42 1 9.7026 9.2442 7.1229 43 1 4.5701 5.1424 0.1095 44 1 6.0927 6.0278 -0.1554 45 1 4.6325 4.0197 -2.0755 46 1 6.0871 4.9617 -2.4808 47 1 6.1070 3.1875 -2.6243 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073636052.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:57 Heat of formation + Delta-G solvation = -115.489853 kcal Electronic energy + Delta-G solvation = -26155.516509 eV Core-core repulsion = 22462.692151 eV Total energy + Delta-G solvation = -3692.824357 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.76423 -40.51671 -38.75660 -35.63971 -35.20363 -34.58941 -34.00181 -32.24676 -31.05054 -28.86336 -27.77288 -27.25835 -26.08296 -23.69786 -22.84976 -21.42690 -21.25865 -20.10338 -19.46075 -18.39632 -17.92906 -17.09414 -17.02815 -16.87947 -16.83268 -16.28904 -15.86513 -15.67395 -15.21033 -15.05760 -14.90417 -14.56351 -14.48626 -14.40932 -13.92203 -13.83755 -13.55943 -13.17611 -13.09132 -12.91058 -12.87265 -12.80017 -12.70892 -12.60832 -12.54497 -12.06557 -12.00887 -11.97741 -11.74502 -11.59908 -11.55545 -11.13479 -10.88802 -10.79040 -10.28123 -10.07936 -9.67640 -8.67553 -8.34990 -6.13192 1.24710 1.43247 1.44890 1.54204 1.55724 1.72447 2.05849 2.25198 2.27223 2.99001 3.23079 3.48544 3.70843 3.73778 3.82664 3.87375 3.98112 4.06273 4.16212 4.18151 4.23530 4.30688 4.40146 4.45948 4.58050 4.62246 4.69250 4.74800 4.77064 4.81856 4.82483 4.89535 4.95223 5.04480 5.08026 5.13758 5.26816 5.30515 5.31243 5.40912 5.47513 5.54044 5.55969 6.18790 6.23199 6.59802 7.06177 7.12030 7.32436 8.73873 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016929 B = 0.002535 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.537883 B =11040.922026 C =12060.108899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C -0.137 4.137 4 C 0.511 3.489 5 O -0.584 6.584 6 N -0.713 5.713 7 C 0.159 3.841 8 H 0.082 0.918 9 C -0.141 4.141 10 C 0.108 3.892 11 N -0.604 5.604 12 C 0.535 3.465 13 O -0.563 6.563 14 C -0.125 4.125 15 S -0.149 6.149 16 C -0.547 4.547 17 H 0.082 0.918 18 C 0.014 3.986 19 N -0.910 5.910 20 Si 0.997 3.003 21 H -0.263 1.263 22 H -0.279 1.279 23 H -0.261 1.261 24 C 0.114 3.886 25 C -0.104 4.104 26 H 0.078 0.922 27 C -0.138 4.138 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.113 0.887 34 H 0.116 0.884 35 H 0.411 0.589 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.107 0.893 41 H 0.104 0.896 42 H 0.271 0.729 43 H 0.091 0.909 44 H 0.077 0.923 45 H 0.071 0.929 46 H 0.062 0.938 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.254 -16.660 -15.750 28.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.147 4.147 3 C -0.176 4.176 4 C 0.300 3.700 5 O -0.464 6.464 6 N -0.366 5.366 7 C 0.053 3.947 8 H 0.100 0.900 9 C -0.181 4.181 10 C -0.014 4.014 11 N -0.338 5.338 12 C 0.323 3.677 13 O -0.441 6.441 14 C -0.276 4.276 15 S 0.078 5.922 16 C -0.694 4.694 17 H 0.100 0.900 18 C -0.191 4.191 19 N -0.547 5.547 20 Si 0.819 3.181 21 H -0.188 1.188 22 H -0.204 1.204 23 H -0.186 1.186 24 C -0.008 4.008 25 C -0.123 4.123 26 H 0.096 0.904 27 C -0.196 4.196 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.131 0.869 34 H 0.135 0.865 35 H 0.248 0.752 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.107 0.893 39 H 0.105 0.895 40 H 0.125 0.875 41 H 0.122 0.878 42 H 0.080 0.920 43 H 0.109 0.891 44 H 0.095 0.905 45 H 0.090 0.910 46 H 0.081 0.919 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.317 -15.709 -16.541 28.047 hybrid contribution 0.204 -0.788 1.702 1.886 sum -16.114 -16.497 -14.839 27.423 Atomic orbital electron populations 1.21766 0.94053 1.02216 1.02646 1.21239 0.96432 0.95116 1.01948 1.21776 0.89360 0.99986 1.06484 1.21301 0.91469 0.82988 0.74254 1.90699 1.71569 1.32876 1.51293 1.46081 1.06530 1.09083 1.74887 1.20772 0.80519 0.97854 0.95525 0.90026 1.22255 1.01557 0.98299 0.95963 1.21871 1.01352 0.81416 0.96800 1.48059 1.57286 1.16481 1.11982 1.20056 0.76704 0.83113 0.87807 1.90680 1.54598 1.28428 1.70408 1.23381 1.04662 1.03879 0.95724 1.85545 1.73724 1.21189 1.11705 1.23151 1.44171 1.05754 0.96371 0.90032 1.26113 0.94259 0.94407 1.04312 1.70173 1.37499 1.09148 1.37838 0.85024 0.78937 0.78129 0.76042 1.18768 1.20368 1.18601 1.21762 1.00811 0.99124 0.79110 1.21699 1.01291 0.93056 0.96296 0.90380 1.21712 1.02271 1.02544 0.93070 0.92614 0.91916 0.91664 0.92816 0.93050 0.86910 0.86549 0.75169 0.90131 0.90877 0.89254 0.89512 0.87522 0.87814 0.91980 0.89080 0.90471 0.90975 0.91854 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.91 71.98 0.71 -0.50 16 2 C -0.11 -1.32 5.22 30.59 0.16 -1.16 16 3 C -0.14 -1.19 5.70 29.85 0.17 -1.02 16 4 C 0.51 7.82 7.79 87.66 0.68 8.50 16 5 O -0.58 -14.31 15.65 -3.04 -0.05 -14.36 16 6 N -0.71 -8.48 3.60 -442.40 -1.59 -10.07 16 7 C 0.16 2.48 2.21 45.02 0.10 2.58 16 8 H 0.08 1.52 7.58 -2.39 -0.02 1.50 16 9 C -0.14 -2.52 5.77 30.67 0.18 -2.34 16 10 C 0.11 2.05 6.08 86.36 0.53 2.58 16 11 N -0.60 -14.99 2.97 -818.91 -2.43 -17.42 16 12 C 0.54 19.54 7.72 87.66 0.68 20.22 16 13 O -0.56 -25.53 15.27 -3.04 -0.05 -25.58 16 14 C -0.13 -4.97 4.50 71.24 0.32 -4.65 16 15 S -0.15 -8.24 20.57 -56.49 -1.16 -9.40 16 16 C -0.55 -31.11 9.50 67.95 0.65 -30.47 16 17 H 0.08 4.30 7.80 -2.91 -0.02 4.28 16 18 C 0.01 0.79 5.49 84.86 0.47 1.26 16 19 N -0.91 -55.76 13.22 21.65 0.29 -55.48 16 20 Si 1.00 43.45 29.55 68.60 2.03 45.47 16 21 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 22 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 23 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 24 C 0.11 2.21 5.42 86.36 0.47 2.68 16 25 C -0.10 -1.62 2.67 -10.71 -0.03 -1.64 16 26 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 27 C -0.14 -1.61 9.05 71.98 0.65 -0.96 16 28 H 0.05 0.47 8.14 -2.39 -0.02 0.46 16 29 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.05 0.80 8.10 -2.39 -0.02 0.78 16 32 H 0.05 0.80 8.10 -2.38 -0.02 0.78 16 33 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.41 3.09 6.73 -92.71 -0.62 2.46 16 36 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.09 1.34 7.74 -2.39 -0.02 1.32 16 39 H 0.09 1.78 5.93 -2.39 -0.01 1.76 16 40 H 0.11 3.82 7.94 -2.40 -0.02 3.80 16 41 H 0.10 3.79 7.69 -2.39 -0.02 3.77 16 42 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 43 H 0.09 1.22 6.64 -2.39 -0.02 1.20 16 44 H 0.08 1.92 7.00 -2.39 -0.02 1.90 16 45 H 0.07 0.63 7.54 -2.39 -0.02 0.61 16 46 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -79.28 387.73 3.09 -76.19 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: 0.33 Total: 15.55 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: 5.73 Total: -4.92 kcal Atomic # 7 Polarization: -79.23 SS G_CDS: -3.74 Total: -82.97 kcal Atomic # 8 Polarization: -39.84 SS G_CDS: -0.09 Total: -39.94 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 16 Polarization: -8.24 SS G_CDS: -1.16 Total: -9.40 kcal Total: -79.28 3.09 -76.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073636052.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.301 kcal (2) G-P(sol) polarization free energy of solvation -79.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds