Wall clock time and date at job start Tue Mar 31 2020 15:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47113 * 2 1 4 4 C 1.50704 * 109.47234 * 179.97438 * 3 2 1 5 5 O 1.21281 * 119.99787 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99948 * 179.97438 * 4 3 2 7 7 C 1.46500 * 120.00024 * 180.02562 * 6 4 3 8 8 H 1.09000 * 109.44539 * 325.03916 * 7 6 4 9 9 C 1.53034 * 109.45778 * 85.00347 * 7 6 4 10 10 C 1.53188 * 109.31404 * 181.38788 * 9 7 6 11 11 N 1.46933 * 108.77495 * 305.36890 * 10 9 7 12 12 C 1.34778 * 120.62741 * 233.58614 * 11 10 9 13 13 O 1.21279 * 120.00169 * 180.02562 * 12 11 10 14 14 C 1.50698 * 120.00023 * 0.02562 * 12 11 10 15 15 S 1.81004 * 109.47124 * 179.97438 * 14 12 11 16 16 C 1.76202 * 100.00170 * 179.97438 * 15 14 12 17 17 H 1.08000 * 119.99808 * 0.02562 * 16 15 14 18 18 C 1.38802 * 119.99850 * 179.97438 * 16 15 14 19 19 N 1.31629 * 120.00032 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99655 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47281 * 89.99944 * 20 18 16 22 22 H 1.48503 * 109.47201 * 209.99866 * 20 18 16 23 23 H 1.48500 * 109.47189 * 329.99935 * 20 18 16 24 24 C 1.46919 * 118.74003 * 53.60503 * 11 10 9 25 25 C 1.53195 * 108.89273 * 306.32349 * 24 11 10 26 26 H 1.09002 * 109.49585 * 294.75599 * 25 24 11 27 27 C 1.53001 * 109.49760 * 174.65835 * 25 24 11 28 28 H 1.08999 * 109.46944 * 60.00382 * 1 2 3 29 29 H 1.08999 * 109.46863 * 179.97438 * 1 2 3 30 30 H 1.08989 * 109.47556 * 300.00002 * 1 2 3 31 31 H 1.09003 * 109.47494 * 239.99926 * 2 1 3 32 32 H 1.09009 * 109.46937 * 119.99798 * 2 1 3 33 33 H 1.09003 * 109.47001 * 59.99624 * 3 2 1 34 34 H 1.08996 * 109.47402 * 299.99695 * 3 2 1 35 35 H 0.96996 * 120.00224 * 0.02562 * 6 4 3 36 36 H 1.08994 * 109.50232 * 61.43598 * 9 7 6 37 37 H 1.09007 * 109.52628 * 301.35259 * 9 7 6 38 38 H 1.08994 * 109.59289 * 185.57924 * 10 9 7 39 39 H 1.09002 * 109.58818 * 65.14921 * 10 9 7 40 40 H 1.09001 * 109.47488 * 299.99559 * 14 12 11 41 41 H 1.09001 * 109.47269 * 59.99982 * 14 12 11 42 42 H 0.96996 * 119.99581 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.58751 * 66.18300 * 24 11 10 44 44 H 1.08996 * 109.58750 * 186.46484 * 24 11 10 45 45 H 1.09005 * 109.46904 * 59.99770 * 27 25 24 46 46 H 1.08994 * 109.46936 * 180.02562 * 27 25 24 47 47 H 1.08994 * 109.47295 * 300.00137 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 8 4.1534 0.3922 0.0006 6 7 4.2209 2.6097 0.0002 7 6 5.6859 2.6098 0.0003 8 1 6.0487 1.7676 0.5896 9 6 6.1957 2.4836 -1.4371 10 6 7.7272 2.4491 -1.4303 11 7 8.2237 3.6329 -0.7156 12 6 9.1179 4.4591 -1.2938 13 8 9.5205 5.4329 -0.6933 14 6 9.6175 4.1730 -2.6864 15 16 10.7978 5.4539 -3.1791 16 6 11.2080 4.8864 -4.7960 17 1 10.7526 3.9875 -5.1845 18 6 12.1158 5.5952 -5.5707 19 7 12.6704 6.6911 -5.0973 20 14 12.5501 4.9940 -7.2851 21 1 11.6171 5.5951 -8.2717 22 1 13.9421 5.3947 -7.6123 23 1 12.4365 3.5141 -7.3342 24 6 7.7272 3.8987 0.6414 25 6 6.1957 3.9193 0.6141 26 1 5.8538 4.7605 0.0110 27 6 5.6613 4.0622 2.0406 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.7359 3.4497 -0.0001 36 1 5.8537 3.3381 -2.0208 37 1 5.8131 1.5639 -1.8800 38 1 8.0976 2.4591 -2.4554 39 1 8.0701 1.5465 -0.9245 40 1 10.1087 3.2000 -2.7035 41 1 8.7768 4.1679 -3.3802 42 1 13.3045 7.1866 -5.6389 43 1 8.0702 3.1143 1.3161 44 1 8.0996 4.8641 0.9842 45 1 6.0293 4.9918 2.4750 46 1 4.5717 4.0764 2.0207 47 1 6.0024 3.2200 2.6424 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073636053.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:03 Heat of formation + Delta-G solvation = -95.680877 kcal Electronic energy + Delta-G solvation = -25781.816144 eV Core-core repulsion = 22089.850768 eV Total energy + Delta-G solvation = -3691.965376 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.64391 -39.55931 -37.60866 -34.92870 -34.65263 -33.24627 -32.43317 -31.29003 -29.56188 -28.39248 -26.56541 -25.50959 -24.75633 -22.73096 -22.10941 -20.86070 -20.42837 -19.16855 -17.71713 -17.31602 -16.92338 -16.27798 -16.14092 -15.75336 -15.28461 -14.86429 -14.80700 -14.42761 -14.19111 -14.09153 -13.88196 -13.56821 -13.40428 -13.24095 -12.86864 -12.64067 -12.44467 -12.36391 -12.20532 -12.14143 -11.89946 -11.68105 -11.57240 -11.30180 -11.23751 -11.14185 -11.06494 -11.02216 -10.77043 -10.69647 -10.08816 -9.81033 -9.42897 -9.28106 -9.07042 -8.56544 -8.23197 -6.50701 -6.22052 -3.92661 2.36229 2.80762 2.91325 3.06378 3.22070 3.25743 3.30148 3.58430 4.19714 4.23177 4.40064 4.48303 4.51941 4.59590 4.62764 4.88651 4.89493 5.00690 5.04083 5.07635 5.13128 5.17960 5.20030 5.22301 5.33168 5.38694 5.40655 5.55111 5.56476 5.60689 5.65678 5.69605 5.75139 5.77922 5.86623 5.87179 5.91278 5.92287 6.05118 6.11283 6.20796 6.60577 7.18882 7.52634 7.59407 7.94182 8.34853 8.53746 9.23304 10.85343 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018634 B = 0.002325 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.297993 B =12041.692218 C =13185.182891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.142 4.142 4 C 0.511 3.489 5 O -0.540 6.540 6 N -0.726 5.726 7 C 0.151 3.849 8 H 0.090 0.910 9 C -0.145 4.145 10 C 0.111 3.889 11 N -0.622 5.622 12 C 0.536 3.464 13 O -0.517 6.517 14 C -0.151 4.151 15 S -0.061 6.061 16 C -0.535 4.535 17 H 0.072 0.928 18 C 0.073 3.927 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C 0.121 3.879 25 C -0.113 4.113 26 H 0.081 0.919 27 C -0.143 4.143 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.400 0.600 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.268 0.732 43 H 0.066 0.934 44 H 0.098 0.902 45 H 0.062 0.938 46 H 0.057 0.943 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.519 -10.422 12.460 28.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.182 4.182 4 C 0.298 3.702 5 O -0.416 6.416 6 N -0.377 5.377 7 C 0.046 3.954 8 H 0.108 0.892 9 C -0.184 4.184 10 C -0.013 4.013 11 N -0.358 5.358 12 C 0.324 3.676 13 O -0.391 6.391 14 C -0.302 4.302 15 S 0.166 5.834 16 C -0.683 4.683 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.207 1.207 23 H -0.197 1.197 24 C -0.002 4.002 25 C -0.133 4.133 26 H 0.100 0.900 27 C -0.201 4.201 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.234 0.766 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.112 0.888 39 H 0.088 0.912 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.117 0.883 45 H 0.081 0.919 46 H 0.076 0.924 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -22.334 -9.587 13.319 27.715 hybrid contribution -0.497 -1.081 -1.900 2.241 sum -22.831 -10.668 11.420 27.667 Atomic orbital electron populations 1.21796 0.95484 1.02026 1.01767 1.21278 0.95249 0.94634 1.03602 1.21737 0.91790 1.00301 1.04351 1.20786 0.90321 0.83611 0.75478 1.90714 1.70512 1.31265 1.49123 1.46143 1.07225 1.08695 1.75664 1.21062 0.79235 0.98585 0.96497 0.89187 1.22319 0.95841 1.03305 0.96935 1.21679 0.93085 0.87918 0.98577 1.48139 1.44618 1.26783 1.16230 1.20337 0.77699 0.81774 0.87749 1.90688 1.56399 1.27574 1.64448 1.23560 1.04671 1.06792 0.95140 1.85391 1.49807 1.30058 1.18190 1.22859 1.30580 1.14038 1.00833 0.90942 1.24993 0.95073 0.94654 0.98877 1.70017 1.27635 1.15369 1.37238 0.86170 0.77843 0.79028 0.82478 1.20280 1.20746 1.19680 1.21514 0.91488 1.03458 0.83762 1.21856 0.96463 0.97378 0.97606 0.90041 1.21743 1.00858 1.02387 0.95108 0.92664 0.92376 0.92712 0.91201 0.91266 0.89004 0.88915 0.76627 0.91060 0.90163 0.88812 0.91170 0.89208 0.89277 0.92190 0.91574 0.88341 0.91871 0.92408 0.92345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.91 37.16 0.37 -0.37 16 2 C -0.11 -0.72 5.22 -26.73 -0.14 -0.86 16 3 C -0.14 -0.79 5.70 -27.88 -0.16 -0.95 16 4 C 0.51 4.47 7.79 -10.98 -0.09 4.39 16 5 O -0.54 -6.94 15.64 5.56 0.09 -6.85 16 6 N -0.73 -5.26 4.38 -53.61 -0.23 -5.50 16 7 C 0.15 1.35 1.89 -67.73 -0.13 1.23 16 8 H 0.09 0.95 7.57 -51.93 -0.39 0.56 16 9 C -0.14 -1.44 5.65 -26.62 -0.15 -1.59 16 10 C 0.11 1.27 6.34 -3.71 -0.02 1.24 16 11 N -0.62 -8.69 2.97 -172.77 -0.51 -9.20 16 12 C 0.54 10.12 7.72 -10.99 -0.08 10.03 16 13 O -0.52 -11.67 15.27 5.56 0.08 -11.59 16 14 C -0.15 -3.07 4.50 36.00 0.16 -2.91 16 15 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 16 C -0.53 -15.22 9.50 30.94 0.29 -14.92 16 17 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 18 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 19 N -0.87 -26.13 13.22 55.49 0.73 -25.39 16 20 Si 0.92 21.41 29.55 -169.99 -5.02 16.39 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 24 C 0.12 1.41 5.71 -3.71 -0.02 1.39 16 25 C -0.11 -0.99 2.47 -90.34 -0.22 -1.22 16 26 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 27 C -0.14 -1.00 9.04 37.16 0.34 -0.67 16 28 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.05 0.23 8.14 -51.94 -0.42 -0.20 16 31 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 32 H 0.07 0.53 8.10 -51.92 -0.42 0.11 16 33 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.40 1.95 8.33 -40.82 -0.34 1.61 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.83 8.14 -51.92 -0.42 0.41 16 38 H 0.09 1.09 5.93 -51.93 -0.31 0.78 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.09 1.70 7.94 -51.92 -0.41 1.29 16 41 H 0.09 1.67 7.69 -51.91 -0.40 1.27 16 42 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.10 1.31 7.00 -51.93 -0.36 0.95 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.06 0.33 7.39 -51.93 -0.38 -0.05 16 47 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 391.76 15.07 5.90 5.90 Total: -1.00 -35.51 391.76 -9.18 -44.70 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -8.06 Total: -1.38 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: 0.05 Total: -3.20 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: -0.01 Total: -40.09 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: 0.17 Total: -18.44 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.51 -9.18 -44.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073636053.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.981 kcal (2) G-P(sol) polarization free energy of solvation -35.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds