Wall clock time and date at job start Tue Mar 31 2020 15:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47113 * 2 1 4 4 C 1.50704 * 109.47234 * 179.97438 * 3 2 1 5 5 O 1.21281 * 119.99787 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99948 * 179.97438 * 4 3 2 7 7 C 1.46500 * 120.00024 * 180.02562 * 6 4 3 8 8 H 1.09000 * 109.44539 * 325.03916 * 7 6 4 9 9 C 1.53034 * 109.45778 * 85.00347 * 7 6 4 10 10 C 1.53188 * 109.31404 * 181.38788 * 9 7 6 11 11 N 1.46933 * 108.77495 * 305.36890 * 10 9 7 12 12 C 1.34778 * 120.62741 * 233.58614 * 11 10 9 13 13 O 1.21279 * 120.00169 * 180.02562 * 12 11 10 14 14 C 1.50698 * 120.00023 * 0.02562 * 12 11 10 15 15 S 1.81004 * 109.47124 * 179.97438 * 14 12 11 16 16 C 1.76202 * 100.00170 * 179.97438 * 15 14 12 17 17 H 1.08000 * 119.99808 * 0.02562 * 16 15 14 18 18 C 1.38802 * 119.99850 * 179.97438 * 16 15 14 19 19 N 1.31629 * 120.00032 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99655 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47281 * 89.99944 * 20 18 16 22 22 H 1.48503 * 109.47201 * 209.99866 * 20 18 16 23 23 H 1.48500 * 109.47189 * 329.99935 * 20 18 16 24 24 C 1.46919 * 118.74003 * 53.60503 * 11 10 9 25 25 C 1.53195 * 108.89273 * 306.32349 * 24 11 10 26 26 H 1.09002 * 109.49585 * 294.75599 * 25 24 11 27 27 C 1.53001 * 109.49760 * 174.65835 * 25 24 11 28 28 H 1.08999 * 109.46944 * 60.00382 * 1 2 3 29 29 H 1.08999 * 109.46863 * 179.97438 * 1 2 3 30 30 H 1.08989 * 109.47556 * 300.00002 * 1 2 3 31 31 H 1.09003 * 109.47494 * 239.99926 * 2 1 3 32 32 H 1.09009 * 109.46937 * 119.99798 * 2 1 3 33 33 H 1.09003 * 109.47001 * 59.99624 * 3 2 1 34 34 H 1.08996 * 109.47402 * 299.99695 * 3 2 1 35 35 H 0.96996 * 120.00224 * 0.02562 * 6 4 3 36 36 H 1.08994 * 109.50232 * 61.43598 * 9 7 6 37 37 H 1.09007 * 109.52628 * 301.35259 * 9 7 6 38 38 H 1.08994 * 109.59289 * 185.57924 * 10 9 7 39 39 H 1.09002 * 109.58818 * 65.14921 * 10 9 7 40 40 H 1.09001 * 109.47488 * 299.99559 * 14 12 11 41 41 H 1.09001 * 109.47269 * 59.99982 * 14 12 11 42 42 H 0.96996 * 119.99581 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.58751 * 66.18300 * 24 11 10 44 44 H 1.08996 * 109.58750 * 186.46484 * 24 11 10 45 45 H 1.09005 * 109.46904 * 59.99770 * 27 25 24 46 46 H 1.08994 * 109.46936 * 180.02562 * 27 25 24 47 47 H 1.08994 * 109.47295 * 300.00137 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 8 4.1534 0.3922 0.0006 6 7 4.2209 2.6097 0.0002 7 6 5.6859 2.6098 0.0003 8 1 6.0487 1.7676 0.5896 9 6 6.1957 2.4836 -1.4371 10 6 7.7272 2.4491 -1.4303 11 7 8.2237 3.6329 -0.7156 12 6 9.1179 4.4591 -1.2938 13 8 9.5205 5.4329 -0.6933 14 6 9.6175 4.1730 -2.6864 15 16 10.7978 5.4539 -3.1791 16 6 11.2080 4.8864 -4.7960 17 1 10.7526 3.9875 -5.1845 18 6 12.1158 5.5952 -5.5707 19 7 12.6704 6.6911 -5.0973 20 14 12.5501 4.9940 -7.2851 21 1 11.6171 5.5951 -8.2717 22 1 13.9421 5.3947 -7.6123 23 1 12.4365 3.5141 -7.3342 24 6 7.7272 3.8987 0.6414 25 6 6.1957 3.9193 0.6141 26 1 5.8538 4.7605 0.0110 27 6 5.6613 4.0622 2.0406 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.7359 3.4497 -0.0001 36 1 5.8537 3.3381 -2.0208 37 1 5.8131 1.5639 -1.8800 38 1 8.0976 2.4591 -2.4554 39 1 8.0701 1.5465 -0.9245 40 1 10.1087 3.2000 -2.7035 41 1 8.7768 4.1679 -3.3802 42 1 13.3045 7.1866 -5.6389 43 1 8.0702 3.1143 1.3161 44 1 8.0996 4.8641 0.9842 45 1 6.0293 4.9918 2.4750 46 1 4.5717 4.0764 2.0207 47 1 6.0024 3.2200 2.6424 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073636053.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:02 Heat of formation + Delta-G solvation = -119.071292 kcal Electronic energy + Delta-G solvation = -25782.830429 eV Core-core repulsion = 22089.850768 eV Total energy + Delta-G solvation = -3692.979660 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.57845 -40.60799 -38.71062 -35.90697 -35.22049 -34.59171 -34.06840 -32.22616 -31.01727 -28.92045 -27.79228 -27.29582 -25.74894 -23.60417 -22.68153 -21.69576 -21.18325 -20.44908 -19.53143 -18.32490 -17.89844 -17.15246 -17.06997 -16.88314 -16.76360 -16.56254 -15.87180 -15.59512 -15.10311 -15.06379 -14.87039 -14.55813 -14.43681 -14.41409 -13.91947 -13.73154 -13.50762 -13.22845 -13.17089 -12.98057 -12.89510 -12.86123 -12.74267 -12.61166 -12.46390 -12.15788 -12.00569 -11.99442 -11.72802 -11.60600 -11.50509 -11.14924 -10.93922 -10.81585 -10.28477 -10.04564 -9.75188 -8.67905 -8.35295 -6.13513 1.24249 1.41838 1.44657 1.53140 1.55669 1.70407 2.04770 2.22369 2.26553 2.98752 3.22397 3.46526 3.68165 3.75428 3.83140 3.86520 3.99381 4.07526 4.15437 4.19942 4.23705 4.32082 4.40314 4.45455 4.57336 4.63679 4.66814 4.70981 4.74067 4.77502 4.80618 4.88112 4.92562 5.00877 5.05635 5.19922 5.26227 5.30132 5.32163 5.41177 5.45839 5.51262 5.54041 6.18902 6.22377 6.60629 7.05942 7.10062 7.31877 8.73861 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018634 B = 0.002325 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.297993 B =12041.692218 C =13185.182891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.110 4.110 3 C -0.135 4.135 4 C 0.508 3.492 5 O -0.585 6.585 6 N -0.714 5.714 7 C 0.156 3.844 8 H 0.078 0.922 9 C -0.136 4.136 10 C 0.106 3.894 11 N -0.607 5.607 12 C 0.536 3.464 13 O -0.563 6.563 14 C -0.126 4.126 15 S -0.149 6.149 16 C -0.546 4.546 17 H 0.082 0.918 18 C 0.014 3.986 19 N -0.910 5.910 20 Si 0.998 3.002 21 H -0.267 1.267 22 H -0.278 1.278 23 H -0.259 1.259 24 C 0.116 3.884 25 C -0.100 4.100 26 H 0.080 0.920 27 C -0.139 4.139 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.414 0.586 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.271 0.729 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.063 0.937 46 H 0.076 0.924 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.904 -11.607 12.083 30.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.149 4.149 3 C -0.174 4.174 4 C 0.297 3.703 5 O -0.465 6.465 6 N -0.365 5.365 7 C 0.051 3.949 8 H 0.096 0.904 9 C -0.176 4.176 10 C -0.017 4.017 11 N -0.341 5.341 12 C 0.324 3.676 13 O -0.441 6.441 14 C -0.277 4.277 15 S 0.079 5.921 16 C -0.694 4.694 17 H 0.100 0.900 18 C -0.191 4.191 19 N -0.547 5.547 20 Si 0.820 3.180 21 H -0.192 1.192 22 H -0.203 1.203 23 H -0.183 1.183 24 C -0.007 4.007 25 C -0.120 4.120 26 H 0.098 0.902 27 C -0.196 4.196 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.251 0.749 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.111 0.889 39 H 0.103 0.897 40 H 0.124 0.876 41 H 0.125 0.875 42 H 0.080 0.920 43 H 0.100 0.900 44 H 0.098 0.902 45 H 0.082 0.918 46 H 0.094 0.906 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -24.781 -10.784 12.963 29.974 hybrid contribution 0.161 -0.792 -1.679 1.863 sum -24.620 -11.575 11.284 29.453 Atomic orbital electron populations 1.21761 0.93928 1.02241 1.02690 1.21252 0.96538 0.95150 1.01919 1.21766 0.89153 0.99966 1.06524 1.21375 0.91608 0.83023 0.74302 1.90701 1.71609 1.32917 1.51301 1.46003 1.06427 1.09234 1.74857 1.20875 0.80390 0.98038 0.95585 0.90358 1.22229 0.94476 1.03239 0.97637 1.21903 0.94243 0.87136 0.98423 1.48104 1.42762 1.26239 1.16965 1.20082 0.78472 0.81939 0.87154 1.90673 1.58467 1.29738 1.65267 1.23386 1.03251 1.04446 0.96598 1.85549 1.52931 1.34445 1.19206 1.23188 1.30886 1.14390 1.00927 0.90002 1.26123 0.94727 0.94630 1.03652 1.70180 1.28416 1.16873 1.39184 0.84961 0.77652 0.79015 0.76401 1.19225 1.20277 1.18283 1.21736 0.93550 1.03022 0.82390 1.21723 0.94086 0.97177 0.99006 0.90195 1.21722 1.01941 1.02472 0.93506 0.91843 0.92626 0.91603 0.93114 0.92867 0.86459 0.86833 0.74861 0.91039 0.90214 0.88904 0.89672 0.87645 0.87489 0.91977 0.90036 0.90211 0.91776 0.90556 0.92304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 71.98 0.71 -0.41 16 2 C -0.11 -1.31 5.22 30.59 0.16 -1.15 16 3 C -0.13 -1.12 5.70 29.85 0.17 -0.95 16 4 C 0.51 7.88 7.79 87.66 0.68 8.56 16 5 O -0.59 -14.58 15.64 -3.03 -0.05 -14.63 16 6 N -0.71 -8.49 4.38 -441.92 -1.94 -10.43 16 7 C 0.16 2.49 1.89 45.12 0.09 2.58 16 8 H 0.08 1.51 7.57 -2.39 -0.02 1.50 16 9 C -0.14 -2.46 5.65 30.67 0.17 -2.29 16 10 C 0.11 2.23 6.34 86.36 0.55 2.78 16 11 N -0.61 -16.43 2.97 -818.92 -2.44 -18.86 16 12 C 0.54 20.30 7.72 87.66 0.68 20.98 16 13 O -0.56 -26.23 15.27 -3.03 -0.05 -26.27 16 14 C -0.13 -5.09 4.50 71.24 0.32 -4.77 16 15 S -0.15 -8.30 20.57 -56.49 -1.16 -9.46 16 16 C -0.55 -31.29 9.50 67.96 0.65 -30.64 16 17 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 18 C 0.01 0.77 5.49 84.86 0.47 1.24 16 19 N -0.91 -55.95 13.22 21.65 0.29 -55.67 16 20 Si 1.00 43.69 29.55 68.60 2.03 45.71 16 21 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 22 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 23 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 24 C 0.12 2.58 5.71 86.36 0.49 3.07 16 25 C -0.10 -1.57 2.47 -10.61 -0.03 -1.60 16 26 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 27 C -0.14 -1.61 9.04 71.98 0.65 -0.96 16 28 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.05 0.78 8.10 -2.39 -0.02 0.76 16 32 H 0.05 0.79 8.10 -2.38 -0.02 0.77 16 33 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.41 2.63 8.33 -92.71 -0.77 1.86 16 36 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 38 H 0.09 2.00 5.93 -2.39 -0.01 1.98 16 39 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.11 3.92 7.94 -2.39 -0.02 3.90 16 41 H 0.11 3.92 7.69 -2.40 -0.02 3.90 16 42 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 43 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.08 2.14 7.00 -2.39 -0.02 2.12 16 45 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 46 H 0.08 0.63 7.39 -2.39 -0.02 0.61 16 47 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -80.19 391.76 2.63 -77.57 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.18 Total: 15.61 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: 5.76 Total: -3.57 kcal Atomic # 7 Polarization: -80.87 SS G_CDS: -4.08 Total: -84.96 kcal Atomic # 8 Polarization: -40.81 SS G_CDS: -0.09 Total: -40.90 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: -8.30 SS G_CDS: -1.16 Total: -9.46 kcal Total: -80.19 2.63 -77.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073636053.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.505 kcal (2) G-P(sol) polarization free energy of solvation -80.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds