Wall clock time and date at job start Tue Mar 31 2020 15:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47530 * 2 1 4 4 C 1.50694 * 109.47426 * 179.97438 * 3 2 1 5 5 O 1.21283 * 119.99923 * 0.02562 * 4 3 2 6 6 N 1.34777 * 120.00035 * 179.97438 * 4 3 2 7 7 C 1.46498 * 120.00061 * 179.97438 * 6 4 3 8 8 H 1.09004 * 109.44744 * 35.04278 * 7 6 4 9 9 C 1.53039 * 109.46416 * 275.07235 * 7 6 4 10 10 C 1.53620 * 109.24437 * 178.48702 * 9 7 6 11 11 N 1.46928 * 108.53888 * 54.85908 * 10 9 7 12 12 C 1.34779 * 120.62856 * 126.37107 * 11 10 9 13 13 O 1.21282 * 119.99922 * 179.72064 * 12 11 10 14 14 C 1.50699 * 120.00037 * 359.71632 * 12 11 10 15 15 S 1.81000 * 109.46881 * 180.02562 * 14 12 11 16 16 C 1.76206 * 99.99929 * 180.02562 * 15 14 12 17 17 H 1.07998 * 119.99720 * 359.97438 * 16 15 14 18 18 C 1.38796 * 119.99847 * 180.02562 * 16 15 14 19 19 N 1.31638 * 119.99705 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 120.00469 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.46939 * 90.00148 * 20 18 16 22 22 H 1.48496 * 109.47561 * 210.00294 * 20 18 16 23 23 H 1.48498 * 109.46932 * 330.00626 * 20 18 16 24 24 C 1.46924 * 118.73884 * 306.09282 * 11 10 9 25 25 C 1.53041 * 109.45977 * 155.00407 * 7 6 4 26 26 H 1.08999 * 109.52313 * 61.41876 * 25 7 6 27 27 C 1.52995 * 109.49883 * 301.34148 * 25 7 6 28 28 H 1.09002 * 109.46470 * 299.99816 * 1 2 3 29 29 H 1.09003 * 109.46710 * 59.99512 * 1 2 3 30 30 H 1.09000 * 109.47075 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47165 * 240.00280 * 2 1 3 32 32 H 1.08997 * 109.47554 * 120.00469 * 2 1 3 33 33 H 1.09007 * 109.46668 * 59.99976 * 3 2 1 34 34 H 1.09007 * 109.47125 * 300.00631 * 3 2 1 35 35 H 0.97003 * 120.00056 * 0.02562 * 6 4 3 36 36 H 1.08997 * 109.49876 * 298.56703 * 9 7 6 37 37 H 1.09009 * 109.49496 * 58.66512 * 9 7 6 38 38 H 1.09001 * 109.74495 * 295.12635 * 10 9 7 39 39 H 1.08996 * 109.66761 * 174.55234 * 10 9 7 40 40 H 1.09000 * 109.47247 * 60.00371 * 14 12 11 41 41 H 1.09001 * 109.47358 * 299.99798 * 14 12 11 42 42 H 0.96996 * 119.99710 * 179.97438 * 19 18 16 43 43 H 1.09002 * 109.58588 * 173.65209 * 24 11 10 44 44 H 1.08999 * 109.58627 * 294.07051 * 24 11 10 45 45 H 1.09009 * 109.47336 * 300.16005 * 27 25 7 46 46 H 1.09003 * 109.47413 * 60.15938 * 27 25 7 47 47 H 1.08995 * 109.47647 * 180.16113 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4425 0.0006 5 8 4.1535 0.3921 0.0006 6 7 4.2210 2.6096 0.0002 7 6 5.6860 2.6096 0.0014 8 1 6.0493 1.7676 -0.5878 9 6 6.1947 2.4832 1.4392 10 6 7.7305 2.4455 1.4314 11 7 8.2233 3.6326 0.7195 12 6 9.1171 4.4587 1.2985 13 8 9.5201 5.4326 0.6984 14 6 9.6158 4.1722 2.6914 15 16 10.7957 5.4529 3.1851 16 6 11.2048 4.8851 4.8021 17 1 10.7491 3.9861 5.1901 18 6 12.1120 5.5937 5.5776 19 7 12.4173 5.1697 6.7859 20 14 12.8997 7.1489 4.9068 21 1 12.0600 8.3214 5.2608 22 1 14.2526 7.3128 5.4968 23 1 13.0127 7.0490 3.4295 24 6 7.7278 3.8987 -0.6379 25 6 6.1963 3.9169 -0.6090 26 1 5.8538 4.7583 -0.0066 27 6 5.6603 4.0582 -2.0350 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.6768 1.9563 0.8901 34 1 1.6767 1.9564 -0.8900 35 1 3.7360 3.4497 -0.0001 36 1 5.8523 3.3377 2.0228 37 1 5.8117 1.5632 1.8811 38 1 8.0741 1.5452 0.9220 39 1 8.1028 2.4530 2.4557 40 1 10.1068 3.1992 2.7086 41 1 8.7746 4.1670 3.3846 42 1 13.0515 5.6647 7.3276 43 1 8.0984 4.8652 -0.9792 44 1 8.0713 3.1144 -1.3125 45 1 6.0021 3.2160 -2.6368 46 1 4.5706 4.0711 -2.0140 47 1 6.0263 4.9880 -2.4704 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073636054.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:07 Heat of formation + Delta-G solvation = -95.245762 kcal Electronic energy + Delta-G solvation = -25823.806625 eV Core-core repulsion = 22131.860117 eV Total energy + Delta-G solvation = -3691.946508 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.69497 -39.62845 -37.69229 -34.98409 -34.67166 -33.28677 -32.44364 -31.32555 -29.70167 -28.40482 -26.62009 -25.62903 -24.84528 -22.78337 -22.13206 -20.90179 -20.46589 -19.26431 -17.72712 -17.34754 -16.99505 -16.32769 -16.18283 -15.81368 -15.38170 -14.97311 -14.89488 -14.44899 -14.21500 -14.09774 -13.83728 -13.61676 -13.43186 -13.34565 -12.96676 -12.78675 -12.46520 -12.42423 -12.25046 -12.17380 -12.02484 -11.75790 -11.58320 -11.35779 -11.29550 -11.24139 -11.14749 -11.01595 -10.76145 -10.58877 -10.10856 -9.86487 -9.53120 -9.32790 -9.01051 -8.65288 -8.49941 -6.92870 -6.29394 -4.01325 2.34638 2.67971 2.77886 2.94987 3.17425 3.32395 3.49894 3.57705 4.19871 4.32363 4.38327 4.45262 4.48870 4.55751 4.59795 4.65322 4.84096 4.98550 4.99592 5.01503 5.06874 5.09572 5.16093 5.19270 5.20755 5.32263 5.35267 5.39952 5.50970 5.54754 5.64621 5.64869 5.73508 5.74337 5.74662 5.81794 5.84988 5.91483 5.97933 6.01267 6.18119 6.51459 7.16649 7.42196 7.92425 7.93634 8.40374 8.41254 9.16707 10.79784 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.022236 B = 0.002317 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.937215 B =12080.549731 C =12933.743178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.142 4.142 4 C 0.511 3.489 5 O -0.539 6.539 6 N -0.726 5.726 7 C 0.151 3.849 8 H 0.090 0.910 9 C -0.145 4.145 10 C 0.110 3.890 11 N -0.620 5.620 12 C 0.535 3.465 13 O -0.519 6.519 14 C -0.122 4.122 15 S -0.143 6.143 16 C -0.521 4.521 17 H 0.088 0.912 18 C 0.095 3.905 19 N -0.880 5.880 20 Si 0.857 3.143 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 C 0.122 3.878 25 C -0.113 4.113 26 H 0.081 0.919 27 C -0.144 4.144 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.400 0.600 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.271 0.729 43 H 0.098 0.902 44 H 0.067 0.933 45 H 0.058 0.942 46 H 0.057 0.943 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.217 -7.266 -16.652 29.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.182 4.182 4 C 0.298 3.702 5 O -0.415 6.415 6 N -0.378 5.378 7 C 0.046 3.954 8 H 0.108 0.892 9 C -0.184 4.184 10 C -0.014 4.014 11 N -0.356 5.356 12 C 0.323 3.677 13 O -0.394 6.394 14 C -0.273 4.273 15 S 0.083 5.917 16 C -0.668 4.668 17 H 0.106 0.894 18 C -0.113 4.113 19 N -0.516 5.516 20 Si 0.682 3.318 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.159 1.159 24 C -0.002 4.002 25 C -0.133 4.133 26 H 0.100 0.900 27 C -0.201 4.201 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.234 0.766 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.113 0.887 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.081 0.919 43 H 0.117 0.883 44 H 0.085 0.915 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -22.059 -6.561 -17.367 28.832 hybrid contribution -0.350 -0.096 0.846 0.920 sum -22.410 -6.657 -16.521 28.626 Atomic orbital electron populations 1.21799 0.95474 1.02038 1.01762 1.21279 0.95260 0.94616 1.03617 1.21738 0.91761 1.00325 1.04352 1.20787 0.90331 0.83598 0.75463 1.90717 1.70507 1.31254 1.49070 1.46140 1.07178 1.08714 1.75726 1.20998 0.79317 0.98554 0.96520 0.89154 1.22399 0.95685 1.03398 0.96934 1.21807 0.93191 0.87759 0.98625 1.48114 1.44541 1.26580 1.16344 1.20306 0.77818 0.81889 0.87704 1.90685 1.56502 1.27670 1.64516 1.23316 1.03534 1.05182 0.95218 1.84784 1.52382 1.34198 1.20299 1.22308 1.31107 1.15252 0.98162 0.89385 1.24718 0.95074 0.97515 0.94038 1.69943 1.33332 1.39554 1.08817 0.86730 0.79476 0.83487 0.82124 1.19236 1.19940 1.15932 1.21534 0.91554 1.03464 0.83607 1.21799 0.96383 0.97467 0.97663 0.90031 1.21753 1.00908 1.02375 0.95104 0.92649 0.92728 0.92362 0.91269 0.91176 0.88906 0.89003 0.76626 0.91000 0.90085 0.90963 0.88703 0.88446 0.88549 0.91946 0.88336 0.91455 0.92316 0.92361 0.91919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.91 37.16 0.37 -0.36 16 2 C -0.11 -0.71 5.22 -26.73 -0.14 -0.85 16 3 C -0.14 -0.77 5.70 -27.88 -0.16 -0.93 16 4 C 0.51 4.38 7.79 -10.99 -0.09 4.30 16 5 O -0.54 -6.84 15.64 5.55 0.09 -6.76 16 6 N -0.73 -5.07 4.37 -53.77 -0.23 -5.30 16 7 C 0.15 1.30 1.88 -67.89 -0.13 1.17 16 8 H 0.09 0.92 7.58 -51.93 -0.39 0.53 16 9 C -0.14 -1.39 5.67 -26.39 -0.15 -1.54 16 10 C 0.11 1.20 6.37 -3.49 -0.02 1.18 16 11 N -0.62 -8.21 2.97 -172.51 -0.51 -8.72 16 12 C 0.53 9.56 7.72 -10.99 -0.08 9.47 16 13 O -0.52 -11.08 15.27 5.56 0.08 -10.99 16 14 C -0.12 -2.37 4.50 36.01 0.16 -2.21 16 15 S -0.14 -3.62 18.55 -107.50 -1.99 -5.62 16 16 C -0.52 -14.97 10.04 30.94 0.31 -14.66 16 17 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 18 C 0.10 2.78 5.50 -17.43 -0.10 2.69 16 19 N -0.88 -26.52 13.97 55.49 0.78 -25.74 16 20 Si 0.86 21.77 27.74 -169.99 -4.72 17.06 16 21 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.24 -5.97 6.74 56.52 0.38 -5.59 16 24 C 0.12 1.33 5.71 -3.71 -0.02 1.31 16 25 C -0.11 -0.94 2.46 -90.50 -0.22 -1.16 16 26 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 27 C -0.14 -0.94 9.02 37.16 0.34 -0.61 16 28 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 32 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 33 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.40 1.84 8.31 -40.82 -0.34 1.50 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.09 1.06 5.93 -51.93 -0.31 0.76 16 40 H 0.10 1.78 7.93 -51.92 -0.41 1.37 16 41 H 0.10 1.74 7.70 -51.91 -0.40 1.34 16 42 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 43 H 0.10 1.24 7.01 -51.93 -0.36 0.88 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.40 8.14 -51.92 -0.42 -0.03 16 46 H 0.06 0.32 7.37 -51.93 -0.38 -0.07 16 47 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 389.02 15.07 5.86 5.86 Total: -1.00 -35.16 389.02 -8.67 -43.82 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -8.09 Total: -1.40 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: 0.07 Total: -2.20 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 0.03 Total: -39.77 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: 0.17 Total: -17.75 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.72 Total: 17.06 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.16 -8.67 -43.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073636054.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.421 kcal (2) G-P(sol) polarization free energy of solvation -35.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds